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    OPT1 oligopeptide transporter 1 [ Solanum lycopersicum (tomato) ]

    Gene ID: 543533, updated on 9-Nov-2023

    Summary

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    Gene symbol
    OPT1
    Gene description
    oligopeptide transporter 1
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
    Also known as
    LeOPT1
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    103 current SL3.0 (GCF_000188115.4) 2 NC_015439.3 (22784894..22799153)
    102 previous assembly SL2.50 (GCF_000188115.3) 2 NC_015439.2 (22295825..22310084)

    Chromosome 2 - NC_015439.3Genomic Context describing neighboring genes Neighboring gene subtilisin-like protease SBT1.5 Neighboring gene uncharacterized protein At4g15970 Neighboring gene uncharacterized LOC104645523 Neighboring gene uncharacterized LOC101244431

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Expressed sequence tags from the laboratory-grown miniature tomato (Lycopersicon esculentum) cultivar Micro-Tom and mining for single nucleotide polymorphisms and insertions/deletions in tomato cultivars. Yamamoto N, et al. Gene, 2005 Aug 15. PMID 15975739
    2. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in oligopeptide transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plant-type vacuole membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    oligopeptide transporter 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001247069.2 → NP_001233998.2  oligopeptide transporter 1

      Status: VALIDATED

      Source sequence(s)
      AF016713, BP903719, DB722788
      UniProtKB/TrEMBL
      A0A3Q7EW12, Q9ZTX4
      Conserved Domains (1) summary
      cd17418
      Location:46 → 580
      MFS_NPF8; NRT1/PTR family (NPF), subfamily 8 of the Major Facilitator Superfamily of transporters

    RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SL3.0 Primary Assembly

    Genomic

    1. NC_015439.3 Reference SL3.0 Primary Assembly

      Range
      22784894..22799153
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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