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    OTUD5 OTU deubiquitinase 5 [ Gallus gallus (chicken) ]

    Gene ID: 112530992, updated on 15-Mar-2024

    Summary

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    Official Symbol
    OTUD5provided by CGNC
    Official Full Name
    OTU deubiquitinase 5provided by CGNC
    Primary source
    CGNC:81676
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    ARBP; MECP2
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: Un
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) Unplaced Scaffold NW_024096018.1 (22107..38770)

    NW_024096018.1Genomic Context describing neighboring genes Neighboring gene blue sensitive cone opsin Neighboring gene uncharacterized LOC124417581 Neighboring gene FtsJ RNA methyltransferase homolog 1 (E. coli)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024096018 Unplaced Scaffold Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Chicken MAR-binding protein ARBP is homologous to rat methyl-CpG-binding protein MeCP2. Weitzel JM, et al. Mol Cell Biol, 1997 Sep. PMID 9271441, Free PMC Article
    2. Comparative sequence analysis of the MECP2-locus in human and mouse reveals new transcribed regions. Reichwald K, et al. Mamm Genome, 2000 Mar. PMID 10723722

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables double-stranded methylated DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables methyl-CpG binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of heterochromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: OTU domain-containing protein 5
    Names
    attachment region binding protein
    methyl-CpG binding protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NW_024096018.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      22107..38770
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040657236.2 → XP_040513170.1  LOW QUALITY PROTEIN: OTU domain-containing protein 5

      UniProtKB/TrEMBL
      O42403
      Conserved Domains (1) summary
      smart00391
      Location:93 → 170
      MBD; Methyl-CpG binding domain
    Nucleotide Protein
    Heading Accession and Version

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