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    AAH allantoate amidohydrolase [ Glycine max (soybean) ]

    Gene ID: 100137075, updated on 7-Dec-2023

    Summary

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    Gene symbol
    AAH
    Gene description
    allantoate amidohydrolase
    Locus tag
    GLYMA_15G156900v4
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
    Also known as
    AAH1; GmAAH1
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    Genomic context

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    Location:
    chromosome: 15
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 15 NC_038251.2 (13139480..13145194, complement)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 15 NC_038251.1 (13142264..13147896, complement)

    Chromosome 15 - NC_038251.2Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At3g57430, chloroplastic Neighboring gene pentatricopeptide repeat-containing protein At3g57430, chloroplastic-like Neighboring gene polygalacturonase QRT3-like Neighboring gene uncharacterized LOC102659695

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Allantoate amidohydrolase transcript expression is independent of drought tolerance in soybean. Charlson DV, et al. J Exp Bot, 2009. PMID 19129162, Free PMC Article
    2. Identification, biochemical characterization, and subcellular localization of allantoate amidohydrolases from Arabidopsis and soybean. Werner AK, et al. Plant Physiol, 2008 Feb. PMID 18065556, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. AAH expression is probably not associated with the increased ureide catabolism observed in drought-tolerant genotypes.
      Title: Allantoate amidohydrolase transcript expression is independent of drought tolerance in soybean.
    2. The isolation and characterization of Allantoate amidohydrolase in A. thaliana and G. max are reported.
      Title: Identification, biochemical characterization, and subcellular localization of allantoate amidohydrolases from Arabidopsis and soybean.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    allantoate deiminase 1
    Names
    Allantoate amidohydrolase 1
    Allantoate deiminase 1
    putative allantoate amidohydrolase
    NP_001236563.1
    NP_001336340.1
    NP_001336341.1
    XP_014622795.1
    XP_014622796.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001249634.2 → NP_001236563.1  allantoate deiminase 1 isoform 1 precursor

      See identical proteins and their annotated locations for NP_001236563.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
      Source sequence(s)
      ACUP04005273, FJ796239
      UniProtKB/Swiss-Prot
      A9GYV1, C0M0V4, I1MGU4
      UniProtKB/TrEMBL
      B7UDC1
      Conserved Domains (1) summary
      cd03884
      Location:55 → 480
      M20_bAS; M20 Peptidase beta-alanine synthase, an amidohydrolase

    2. NM_001349411.1 → NP_001336340.1  allantoate deiminase 1 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 5' coding region and uses a downstream start codon compared to variant 1. It encodes isoform 2 which has a shorter N-terminus compared to isoform 1.
      Source sequence(s)
      ACUP04005273
      UniProtKB/TrEMBL
      B7UDC1
      Conserved Domains (1) summary
      cd03884
      Location:1 → 400
      M20_bAS; M20 Peptidase beta-alanine synthase, an amidohydrolase

    3. NM_001349412.1 → NP_001336341.1  allantoate deiminase 1 isoform 3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) uses an alternate splice site at an internal exon, compared to variant 1. This difference results in translation initiation at a downstream in-frame start site . It encodes isoform 3 which has a shorter N-terminus compared to isoform 1 and 2.
      Source sequence(s)
      ACUP04005273, AK286745
      Conserved Domains (1) summary
      cd03884
      Location:9 → 326
      M20_bAS; M20 Peptidase beta-alanine synthase, an amidohydrolase

    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038251.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      13139480..13145194 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014767310.2 → XP_014622796.1  allantoate deiminase 1 isoform X1

      UniProtKB/Swiss-Prot
      A9GYV1, C0M0V4, I1MGU4
      UniProtKB/TrEMBL
      B7UDC1
      Conserved Domains (1) summary
      cd03884
      Location:55 → 480
      M20_bAS; M20 Peptidase beta-alanine synthase, an amidohydrolase

    2. XM_014767309.3 → XP_014622795.1  allantoate deiminase 1 isoform X1

      UniProtKB/Swiss-Prot
      A9GYV1, C0M0V4, I1MGU4
      UniProtKB/TrEMBL
      B7UDC1
      Conserved Domains (1) summary
      cd03884
      Location:55 → 480
      M20_bAS; M20 Peptidase beta-alanine synthase, an amidohydrolase

    RNA

    1. XR_005888532.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    C0M0V4.1 GenPept UniProtKB/Swiss-Prot:C0M0V4

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