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    rnd RNase D [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946328, updated on 4-Feb-2024

    Summary

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    Gene symbol
    rnd
    Gene description
    RNase D
    Primary source
    ASAP:ABE-0006003
    Locus tag
    b1804
    See related
    ECOCYC:EG10858
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1802
    Summary
    RNase D is an exonuclease involved in the 3' ribonucleolytic processing of precursor tRNA. [More information is available at EcoCyc: EG10858].
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    Genomic context

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    Sequence:
    NC_000913.3 (1886864..1887991, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene carnitine monooxygenase subunit YeaW Neighboring gene carnitine monooxygenase subunit YeaX Neighboring gene long-chain-fatty-acid--CoA ligase Neighboring gene Slp family lipoprotein YeaY

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Crystal structure of Escherichia coli RNase D, an exoribonuclease involved in structured RNA processing. Zuo Y, et al. Structure, 2005 Jul. PMID 16004870
    2. Ribonuclease D is not essential for the normal growth of Escherichia coli or bacteriophage T4 or for the biosynthesis of a T4 suppressor tRNA. Blouin RT, et al. J Biol Chem, 1983 Feb 10. PMID 6337139
    3. Genetic mapping of mutation in Escherichia coli leading to a temperature-sensitive RNase D. Zaniewski R, et al. Mol Gen Genet, 1982. PMID 6283310
    4. Escherichia coli RNase D. Catalytic properties and substrate specificity. Cudny H, et al. J Biol Chem, 1981 Jun 10. PMID 6263886
    5. Escherichia coli RNase D. Purification and structural characterization of a putative processing nuclease. Cudny H, et al. J Biol Chem, 1981 Jun 10. PMID 6263885

    See all (25) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. N-terminus verified by Edman degradation on complete protein
      Title: Escherichia coli RNase D: sequencing of the rnd structural gene and purification of the overexpressed protein.
    2. Crystal structure of Escherichia coli RNase D
      Title: Crystal structure of Escherichia coli RNase D, an exoribonuclease involved in structured RNA processing.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    General gene information

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    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables 3'-5' exonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables 3'-5'-RNA exonuclease activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables exonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ribonuclease D activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables ribonuclease D activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in nucleobase-containing compound metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in tRNA 3'-end processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in tRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    RNase D
    NP_416318.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1886864..1887991 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416318.1 RNase D [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416318.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0E0XYF1, A0A0H3PMQ3, A0A3Q0MZF3, A0A3Y7W769, A0A4P8C278, A0A891SUS1, A0A979H259, A0A9P2MMD5, A7ZMS5, B7L6T2, B7NBF0, C3T6J7
      Conserved Domains (1) summary
      PRK10829
      Location:1 → 373
      PRK10829; ribonuclease D; Provisional
    Nucleotide Protein
    Heading Accession and Version

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