GEO DataSet Links for PMC (Select 3458548) - GEO DataSets

Select item 2000384071.

Genome-wide mapping of 5-hydroxymethylcytosine (5hmC) during differentiation of P19.6 and 3T3-L1 cells

(Submitter supplied) Enhancers are developmentally-controlled transcriptional regulatory regions whose activities are modulated through histone modifications or histone variant deposition. Here, we show by genome-wide mapping that the newly discovered DNA modification 5-hydroxymethylcytosine (5hmC) is dynamically associated with transcription factor binding to distal regulatory sites during neural differentiation of mouse P19 cells as well as during adipocyte differentiation of mouse 3T3-L1 cells. more...

Organism:: Mus musculus

Type:: Methylation profiling by high throughput sequencing

Platform:: GPL9250
4 Samples

Download data: WIG

Series

Accession:: GSE38407

ID:: 200038407

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000330672.

Whole-genome mapping of MEIS1, TET1, H3K4me2 and H3K27ac in P19.6 mouse embryonal carcinoma cells and P19.6 cells treated for 48 hours with all-trans retinoic acid

(Submitter supplied) Enhancers are developmentally-controlled transcriptional regulatory regions whose activities are modulated through histone modifications or histone variant deposition. Here, we show by genome-wide mapping that the newly discovered DNA modification 5-hydroxymethylcytosine (5hmC) is dynamically associated with transcription factor binding to distal regulatory sites during neural differentiation of mouse P19 cells as well as during adipocyte differentiation of mouse 3T3-L1 cells. more...

Organism:: Mus musculus

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL9250
9 Samples

Download data: SAM, WIG

Series

Accession:: GSE33067

ID:: 200033067

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000274363.

Dynamic hydroxymethylation of DNA marks differentiation-driven enhancers

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Mus musculus

Type:: Expression profiling by array; Genome binding/occupancy profiling by high throughput sequencing

Platforms:: GPL13179 GPL9250
19 Samples

Download data: PAIR, SAM, WIG

Series

Accession:: GSE27436

ID:: 200027436

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000273344.

Whole-genome gene expression level changes in P19.6 mouse embryonal carcinoma cells compared to P19.6 cells treated for 48 hours with all-trans retinoic acid

(Submitter supplied) Enhancers are developmentally-controlled transcriptional regulatory regions whose activities are modulated through histone modifications or histone variant deposition. Here, we show by genome-wide mapping that the newly discovered DNA modification 5-hydroxymethylcytosine (5hmC) is dynamically associated with transcription factor binding to distal regulatory sites during neural differentiation of mouse P19 cells as well as during adipocyte differentiation of mouse 3T3-L1 cells. more...

Organism:: Mus musculus

Type:: Expression profiling by array

Platform:: GPL13179
6 Samples

Download data: PAIR

Series

Accession:: GSE27334

ID:: 200027334

PubMed Full text in PMC Similar studies Analyze with GEO2R

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