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Genome Information for Gallus gallus
To determine the transcriptional response to Salmonella enterica serovar Enteritidis (SE) infection, a newly developed chicken 44K Agilent array was used to analyze total RNA of heterophils from SE-resistant (line A) and SE–susceptible chickens (line B), treated with in vitro infection of SE (I) or non SE medium (N) for 1 hr. A dual-color balanced design was used to provide a direct comparison between SE-infected and non-infected groups (AI/AN, BI/BN) and between line A and line B (AN/BN, AI/BI). Data retrieved from 426 immunologically important genes were used for functional analysis. The results indicated that: In the comparisons of SE infection with non-infection, 39 genes were found differentially expressed (P < 0.05 with at least 2-fold) after Salmonella infection, while 21 genes were found differentially expressed between different lineages. Numerous of members in Toll-like receptor (TLR) signaling pathway were identified which include receptors: MD-2, TLR-4, -5, -15; adaptors: TLR adaptor molecule1 (TICAM1/TRIF), MAP kinase kinase 3 (MKK3) and NFkB-1, as well as cytokines, chemokines and costimulatory molecule: interleukin (IL)-1β, IL-6, IL-8, IL-12, chemokine (C-X-C motif) ligand 1, chemokine (C-C motif) ligand 4, CCL 5, and CD80. Most of immune genes were up-regulated after SE infection, and the magnitude of up-regulation was higher in line A than line B in general. The results suggested that a similar TLR regulatory network exists in both lines with strong response in resistant line. This finding has laid the foundation for further study of molecular and cellular modulation of SE infection in chickens.
Keywords: disease state analysis
Overall design: A dual color, balanced design was carried on for all of heterophils samples from sixteen chickens. Each sample type (AI, AN, BI and BN) includes four biological replication for labeling. A Dye swap was used in each pair of comparisons including AI/AN, BI/BN, and AI/BI, and AN/BN. Background subtracted signal intensity were collected from 16 arrays and normalized for data analysis.
Accession | PRJNA103153; GEO: GSE9416 |
Data Type | Transcriptome or Gene expression |
Scope | Multiisolate |
Organism | Gallus gallus[Taxonomy ID: 9031] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus; Gallus gallus |
Publications (total 3) Less... | - Wang Y et al., "Integrated analysis of microRNA expression and mRNA transcriptome in lungs of avian influenza virus infected broilers.", BMC Genomics, 2012 Jun 22;13:278
More...- Wang Y et al., "Integrated analysis of microRNA expression and mRNA transcriptome in lungs of avian influenza virus infected broilers.", BMC Genomics, 2012 Jun 22;13:278
- Kogut MH et al., "Gene Expression Analysis of Toll-Like Receptor Pathways in Heterophils from Genetic Chicken Lines that Differ in Their Susceptibility to Salmonella enteritidis.", Front Genet, 2012;3:121
- Chiang HI et al., "Gene expression profiling in chicken heterophils with Salmonella enteritidis stimulation using a chicken 44 K Agilent microarray.", BMC Genomics, 2008 Nov 6;9:526
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Submission | Registration date: 1-Sep-2008 Texas A&M University |
Relevance | Agricultural |
Project Data:
Resource Name | Number of Links |
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Publications |
PubMed | 3 |
PMC | 3 |
Other datasets |
GEO DataSets | 1 |
GEO Data DetailsParameter | Value |
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Data volume, Spots | 672544 |
Data volume, Processed Mbytes | 18 |
Data volume, Supplementary Mbytes | 62 |