# 601067

USHER SYNDROME, TYPE ID; USH1D


Other entities represented in this entry:

USHER SYNDROME, TYPE ID/F, CDH23/PCDH15, DIGENIC, INCLUDED
USH1D/F, CDH23/PCDH15, DIGENIC, INCLUDED

Phenotype-Gene Relationships

Location Phenotype Phenotype
MIM number
Inheritance Phenotype
mapping key
Gene/Locus Gene/Locus
MIM number
10q21.1 Usher syndrome, type 1D/F digenic 601067 AR, DR 3 PCDH15 605514
10q22.1 Usher syndrome, type 1D/F digenic 601067 AR, DR 3 CDH23 605516
10q22.1 Usher syndrome, type 1D 601067 AR, DR 3 CDH23 605516
Clinical Synopsis
 
Phenotypic Series
 

INHERITANCE
- Autosomal recessive
- Digenic recessive
HEAD & NECK
Ears
- Hearing loss, congenital profound
- Vestibular dysfunction
Eyes
- Retinitis pigmentosa
MISCELLANEOUS
- Allelic to deafness, autosomal recessive 12 (601386)
- Second most common form of Usher syndrome type I
- Digenic form type ID/F caused by digenic mutation in the CDH23 and PCDH15 (605514) genes
MOLECULAR BASIS
- Caused by mutation in the cadherin 23 gene (CDH23, 605516.0001)

TEXT

A number sign (#) is used with this entry because Usher syndrome type ID (USH1D) is caused by homozygous or compound heterozygous mutation in the gene encoding cadherin-23 (CDH23; 605516) on chromosome 10q22. The same gene is the site of mutation in a form of nonsyndromic autosomal recessive deafness, DFNB12 (601386).

Type ID/F Usher syndrome is caused by digenic mutation in the CDH23 and PCDH15 (605514) genes.


Description

Usher syndrome type I is an autosomal recessive condition characterized by profound congenital hearing impairment with unintelligible speech, early retinitis pigmentosa (usually evident within the first decade), and constant vestibular dysfunction. Type I is distinguished from type II (276901) on the basis of severity of hearing loss and the extent of vestibular involvement. Type I patients are profoundly deaf, whereas type II patients are 'hard of hearing.' Vestibular function is defective in type I patients, whereas type II patients have normal vestibular function (Moller et al., 1989). Patients with type III (USH3; 276902) have progressive hearing loss.

For a discussion of genetic heterogeneity of Usher syndrome type I, see 276900.


Clinical Features

Wayne et al. (1996) reported that a first-cousin union in a family of Pakistani origin produced 4 children with clinical signs of Usher syndrome, including profound prelingual auditory impairment of sensorineural type, congenital vestibular dysfunction, and progressive pigmentary retinopathy.


Mapping

Wayne et al. (1996) prepared 2 genomic DNA pools, one from affected children from a consanguineous Pakistani family and the other from the first-cousin parents, and screened 161 polymorphic markers evenly spaced across the autosomal genome. The only region showing homozygosity by descent in the affected sibs was a 15-cM interval on chromosome 10 bounded by D10S529 and D10S573. Wayne et al. (1996) concluded that this was the location of the gene responsible for Usher syndrome in this family. They symbolized the locus USH1D.


Molecular Genetics

Usher Syndrome Type ID

Bolz et al. (2001) identified mutations in the CDH23 gene in homozygous or compound heterozygous state in Cuban families and a German patient with USH1D (605516.0001-605516.0004). Di Palma et al. (2001) demonstrated that mutations in the mouse Cdh23 gene are responsible for the 'waltzer' mutation, thus establishing it as a model for USH1D.

Usher Syndrome Type ID/F, CDH23/PCDH15 Digenic

Following the demonstration that mice heterozygous for mutations in both Cdh23 and Pcdh15 (605514) manifest a progressive hearing loss phenotype, Zheng et al. (2005) carried out mutation screening for CDH23 and PCDH15 mutations in 76 probands with a diagnosis of USH1. They found 3 probands who carried heterozygous mutations in both CDH23 and PCDH15. All had profound congenital nonprogressive deafness, vestibular dysfunction, and retinitis pigmentosa. The first proband carried a 3-bp in-frame deletion in PCDH15 (5601delAAC; 605514.0005) that had been identified in patients with USH1F (602083) and a single-basepair deletion in CDH23 (193delC; 605516.0011) that had been identified in patients with USH1D. The second proband was heterozygous for a 16delT mutation in PCDH15 (605514.0008) and a missense mutation in CDH23 (R3189W; 605516.0012). The third proband was heterozygous for the same in-frame deletion in PCDH15 as the first proband, and homozygous for a previously identified missense mutation in CDH23 (T1209A; 605516.0013). The CDH23 T1209A mutation had been identified in USH1D patients, and the authors suggested that the more severe phenotype in this patient was due to a modifier effect of the PCDH15 5601delAAC mutation. (The CDH23 T1209A mutation was later reclassified as a variant of unknown significance.) All mutations were considered pathogenic because of their location in functionally important and evolutionarily conserved domains and their absence in 100 unrelated controls.

Reclassified Variants

The T1209A variant reported by Zheng et al. (2005) has been reclassified as a variant of unknown significance; see 605516.0013.


Genotype/Phenotype Correlations

Nonsyndromic DFNB12 deafness is associated with CDH23 missense mutations that are presumed to be hypomorphic alleles with sufficient residual activity for retinal and vestibular function, but not for auditory cochlear function. In contrast, homozygous nonsense, frameshift, splice site and some missense mutations of CDH23, or a combination of these USH1D alleles in a compound heterozygote, cause USH1D. Schultz et al. (2011) identified 12 different homozygous CDH23 missense mutations, including 8 novel mutations, in 13 families with DFNB12. All were missense, except 1 in-frame deletion. Ten different homozygous mutations were found in 14 families and 1 singleton with USH1D. These latter mutations were mostly nonsense, frameshift, or splice site mutations, but there was 1 in-frame deletion and 2 missense mutations. Affected individuals in 3 additional families were found to carry compound heterozygous mutations in the CDH23 gene, with the different alleles being associated with either DFNB12 or USH1D. Based on the phenotypes within families, the results indicated that USH1D occurs only when there are 2 USH1D alleles in trans. In contrast, when there is a DFNB12 allele in trans with a USH1D allele, the phenotype is DFNB12. The findings indicated that a DFNB12 allele is phenotypically dominant to a USH1D allele, and can preserve normal retinal and vestibular function even in the presence of a USH1D allele. Schultz et al. (2011) noted the implications for genetic counseling.


REFERENCES

  1. Bolz, H., von Brederlow, B., Ramirez, A., Bryda, E. C., Kutsche, K., Nothwang, H. G., Seeliger, M., Cabrera, M. C.-S., Vila, M. C., Molina, O. P., Gal, A., Kubisch, C. Mutation of CDH23, encoding a new member of the cadherin gene family, causes Usher syndrome type 1D. Nature Genet. 27: 108-112, 2001. [PubMed: 11138009, related citations] [Full Text]

  2. Di Palma, F., Holme, R. H., Bryda, E. C., Belyantseva, I. A., Pellegrino, R., Kachar, B., Steel, K. P., Noben-Trauth, K. Mutations in Cdh23, encoding a new type of cadherin, cause stereocilia disorganization in waltzer, the mouse model for Usher syndrome type 1D. Nature Genet. 27: 103-107, 2001. [PubMed: 11138008, related citations] [Full Text]

  3. Moller, C. G., Kimberling, W. J., Davenport, S. L. H., Priluck, I., White, V., Biscone-Halterman, K., Odkvist, L. M., Brookhouser, P. E., Lund, G., Grissom, T. J. Usher syndrome: an otoneurologic study. Laryngoscope 99: 73-79, 1989. [PubMed: 2909824, related citations] [Full Text]

  4. Schultz, J. M., Bhatti, R., Madeo, A. C., Turriff, A., Muskett, J. A., Zalewski, C. K., King, K. A., Ahmed, Z. M., Riazuddin, S., Ahmad, N., Hussain, Z., Qasim, M., and 12 others. Allelic hierarchy of CDH23 mutations causing non-syndromic deafness DFNB12 or Usher syndrome USH1D in compound heterozygotes. J. Med. Genet. 48: 767-775, 2011. [PubMed: 21940737, related citations] [Full Text]

  5. Wayne, S., Der Kaloustian, V. M., Schloss, M., Polomeno, R., Scott, D. A., Hejtmancik, J. F., Sheffield, V. C., Smith, R. J. H. Localization of the Usher syndrome type ID gene (Ush1D) to chromosome 10. Hum. Molec. Genet. 5: 1689-1692, 1996. [PubMed: 8894709, related citations] [Full Text]

  6. Zheng, Q. Y., Yan, D., Ouyang, X. M., Du, L. L., Yu, H., Chang, B., Johnson, K. R., Liu, X. Z. Digenic inheritance of deafness caused by mutations in genes encoding cadherin 23 and protocadherin 15 in mice and humans. Hum. Molec. Genet. 14: 103-111, 2005. [PubMed: 15537665, images, related citations] [Full Text]


Cassandra L. Kniffin - updated : 3/19/2012
George E. Tiller - updated : 10/31/2007
Victor A. McKusick - updated : 1/23/2001
Victor A. McKusick - updated : 1/2/2001
Moyra Smith - updated : 12/20/1996
Creation Date:
Victor A. McKusick : 2/12/1996
carol : 10/06/2022
alopez : 09/02/2021
carol : 04/16/2014
carol : 4/16/2014
carol : 4/15/2014
mcolton : 4/15/2014
alopez : 3/22/2012
terry : 3/19/2012
ckniffin : 3/19/2012
alopez : 2/3/2012
carol : 5/6/2011
terry : 5/5/2011
alopez : 4/6/2010
alopez : 3/18/2008
alopez : 11/5/2007
terry : 10/31/2007
carol : 2/28/2006
alopez : 1/26/2006
joanna : 12/7/2001
carol : 1/23/2001
terry : 1/23/2001
mgross : 1/2/2001
terry : 10/29/1997
alopez : 7/30/1997
mark : 7/8/1997
mark : 1/24/1997
mark : 12/23/1996
jamie : 12/20/1996
terry : 5/24/1996
mark : 2/17/1996
mark : 2/12/1996

# 601067

USHER SYNDROME, TYPE ID; USH1D


Other entities represented in this entry:

USHER SYNDROME, TYPE ID/F, CDH23/PCDH15, DIGENIC, INCLUDED
USH1D/F, CDH23/PCDH15, DIGENIC, INCLUDED

ORPHA: 231169, 886;   DO: 0110831;  


Phenotype-Gene Relationships

Location Phenotype Phenotype
MIM number
Inheritance Phenotype
mapping key
Gene/Locus Gene/Locus
MIM number
10q21.1 Usher syndrome, type 1D/F digenic 601067 Autosomal recessive; Digenic recessive 3 PCDH15 605514
10q22.1 Usher syndrome, type 1D/F digenic 601067 Autosomal recessive; Digenic recessive 3 CDH23 605516
10q22.1 Usher syndrome, type 1D 601067 Autosomal recessive; Digenic recessive 3 CDH23 605516

TEXT

A number sign (#) is used with this entry because Usher syndrome type ID (USH1D) is caused by homozygous or compound heterozygous mutation in the gene encoding cadherin-23 (CDH23; 605516) on chromosome 10q22. The same gene is the site of mutation in a form of nonsyndromic autosomal recessive deafness, DFNB12 (601386).

Type ID/F Usher syndrome is caused by digenic mutation in the CDH23 and PCDH15 (605514) genes.


Description

Usher syndrome type I is an autosomal recessive condition characterized by profound congenital hearing impairment with unintelligible speech, early retinitis pigmentosa (usually evident within the first decade), and constant vestibular dysfunction. Type I is distinguished from type II (276901) on the basis of severity of hearing loss and the extent of vestibular involvement. Type I patients are profoundly deaf, whereas type II patients are 'hard of hearing.' Vestibular function is defective in type I patients, whereas type II patients have normal vestibular function (Moller et al., 1989). Patients with type III (USH3; 276902) have progressive hearing loss.

For a discussion of genetic heterogeneity of Usher syndrome type I, see 276900.


Clinical Features

Wayne et al. (1996) reported that a first-cousin union in a family of Pakistani origin produced 4 children with clinical signs of Usher syndrome, including profound prelingual auditory impairment of sensorineural type, congenital vestibular dysfunction, and progressive pigmentary retinopathy.


Mapping

Wayne et al. (1996) prepared 2 genomic DNA pools, one from affected children from a consanguineous Pakistani family and the other from the first-cousin parents, and screened 161 polymorphic markers evenly spaced across the autosomal genome. The only region showing homozygosity by descent in the affected sibs was a 15-cM interval on chromosome 10 bounded by D10S529 and D10S573. Wayne et al. (1996) concluded that this was the location of the gene responsible for Usher syndrome in this family. They symbolized the locus USH1D.


Molecular Genetics

Usher Syndrome Type ID

Bolz et al. (2001) identified mutations in the CDH23 gene in homozygous or compound heterozygous state in Cuban families and a German patient with USH1D (605516.0001-605516.0004). Di Palma et al. (2001) demonstrated that mutations in the mouse Cdh23 gene are responsible for the 'waltzer' mutation, thus establishing it as a model for USH1D.

Usher Syndrome Type ID/F, CDH23/PCDH15 Digenic

Following the demonstration that mice heterozygous for mutations in both Cdh23 and Pcdh15 (605514) manifest a progressive hearing loss phenotype, Zheng et al. (2005) carried out mutation screening for CDH23 and PCDH15 mutations in 76 probands with a diagnosis of USH1. They found 3 probands who carried heterozygous mutations in both CDH23 and PCDH15. All had profound congenital nonprogressive deafness, vestibular dysfunction, and retinitis pigmentosa. The first proband carried a 3-bp in-frame deletion in PCDH15 (5601delAAC; 605514.0005) that had been identified in patients with USH1F (602083) and a single-basepair deletion in CDH23 (193delC; 605516.0011) that had been identified in patients with USH1D. The second proband was heterozygous for a 16delT mutation in PCDH15 (605514.0008) and a missense mutation in CDH23 (R3189W; 605516.0012). The third proband was heterozygous for the same in-frame deletion in PCDH15 as the first proband, and homozygous for a previously identified missense mutation in CDH23 (T1209A; 605516.0013). The CDH23 T1209A mutation had been identified in USH1D patients, and the authors suggested that the more severe phenotype in this patient was due to a modifier effect of the PCDH15 5601delAAC mutation. (The CDH23 T1209A mutation was later reclassified as a variant of unknown significance.) All mutations were considered pathogenic because of their location in functionally important and evolutionarily conserved domains and their absence in 100 unrelated controls.

Reclassified Variants

The T1209A variant reported by Zheng et al. (2005) has been reclassified as a variant of unknown significance; see 605516.0013.


Genotype/Phenotype Correlations

Nonsyndromic DFNB12 deafness is associated with CDH23 missense mutations that are presumed to be hypomorphic alleles with sufficient residual activity for retinal and vestibular function, but not for auditory cochlear function. In contrast, homozygous nonsense, frameshift, splice site and some missense mutations of CDH23, or a combination of these USH1D alleles in a compound heterozygote, cause USH1D. Schultz et al. (2011) identified 12 different homozygous CDH23 missense mutations, including 8 novel mutations, in 13 families with DFNB12. All were missense, except 1 in-frame deletion. Ten different homozygous mutations were found in 14 families and 1 singleton with USH1D. These latter mutations were mostly nonsense, frameshift, or splice site mutations, but there was 1 in-frame deletion and 2 missense mutations. Affected individuals in 3 additional families were found to carry compound heterozygous mutations in the CDH23 gene, with the different alleles being associated with either DFNB12 or USH1D. Based on the phenotypes within families, the results indicated that USH1D occurs only when there are 2 USH1D alleles in trans. In contrast, when there is a DFNB12 allele in trans with a USH1D allele, the phenotype is DFNB12. The findings indicated that a DFNB12 allele is phenotypically dominant to a USH1D allele, and can preserve normal retinal and vestibular function even in the presence of a USH1D allele. Schultz et al. (2011) noted the implications for genetic counseling.


REFERENCES

  1. Bolz, H., von Brederlow, B., Ramirez, A., Bryda, E. C., Kutsche, K., Nothwang, H. G., Seeliger, M., Cabrera, M. C.-S., Vila, M. C., Molina, O. P., Gal, A., Kubisch, C. Mutation of CDH23, encoding a new member of the cadherin gene family, causes Usher syndrome type 1D. Nature Genet. 27: 108-112, 2001. [PubMed: 11138009] [Full Text: https://doi.org/10.1038/83667]

  2. Di Palma, F., Holme, R. H., Bryda, E. C., Belyantseva, I. A., Pellegrino, R., Kachar, B., Steel, K. P., Noben-Trauth, K. Mutations in Cdh23, encoding a new type of cadherin, cause stereocilia disorganization in waltzer, the mouse model for Usher syndrome type 1D. Nature Genet. 27: 103-107, 2001. [PubMed: 11138008] [Full Text: https://doi.org/10.1038/83660]

  3. Moller, C. G., Kimberling, W. J., Davenport, S. L. H., Priluck, I., White, V., Biscone-Halterman, K., Odkvist, L. M., Brookhouser, P. E., Lund, G., Grissom, T. J. Usher syndrome: an otoneurologic study. Laryngoscope 99: 73-79, 1989. [PubMed: 2909824] [Full Text: https://doi.org/10.1288/00005537-198901000-00014]

  4. Schultz, J. M., Bhatti, R., Madeo, A. C., Turriff, A., Muskett, J. A., Zalewski, C. K., King, K. A., Ahmed, Z. M., Riazuddin, S., Ahmad, N., Hussain, Z., Qasim, M., and 12 others. Allelic hierarchy of CDH23 mutations causing non-syndromic deafness DFNB12 or Usher syndrome USH1D in compound heterozygotes. J. Med. Genet. 48: 767-775, 2011. [PubMed: 21940737] [Full Text: https://doi.org/10.1136/jmedgenet-2011-100262]

  5. Wayne, S., Der Kaloustian, V. M., Schloss, M., Polomeno, R., Scott, D. A., Hejtmancik, J. F., Sheffield, V. C., Smith, R. J. H. Localization of the Usher syndrome type ID gene (Ush1D) to chromosome 10. Hum. Molec. Genet. 5: 1689-1692, 1996. [PubMed: 8894709] [Full Text: https://doi.org/10.1093/hmg/5.10.1689]

  6. Zheng, Q. Y., Yan, D., Ouyang, X. M., Du, L. L., Yu, H., Chang, B., Johnson, K. R., Liu, X. Z. Digenic inheritance of deafness caused by mutations in genes encoding cadherin 23 and protocadherin 15 in mice and humans. Hum. Molec. Genet. 14: 103-111, 2005. [PubMed: 15537665] [Full Text: https://doi.org/10.1093/hmg/ddi010]


Contributors:
Cassandra L. Kniffin - updated : 3/19/2012
George E. Tiller - updated : 10/31/2007
Victor A. McKusick - updated : 1/23/2001
Victor A. McKusick - updated : 1/2/2001
Moyra Smith - updated : 12/20/1996

Creation Date:
Victor A. McKusick : 2/12/1996

Edit History:
carol : 10/06/2022
alopez : 09/02/2021
carol : 04/16/2014
carol : 4/16/2014
carol : 4/15/2014
mcolton : 4/15/2014
alopez : 3/22/2012
terry : 3/19/2012
ckniffin : 3/19/2012
alopez : 2/3/2012
carol : 5/6/2011
terry : 5/5/2011
alopez : 4/6/2010
alopez : 3/18/2008
alopez : 11/5/2007
terry : 10/31/2007
carol : 2/28/2006
alopez : 1/26/2006
joanna : 12/7/2001
carol : 1/23/2001
terry : 1/23/2001
mgross : 1/2/2001
terry : 10/29/1997
alopez : 7/30/1997
mark : 7/8/1997
mark : 1/24/1997
mark : 12/23/1996
jamie : 12/20/1996
terry : 5/24/1996
mark : 2/17/1996
mark : 2/12/1996