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Schizosaccharomyces pombe (fission yeast) Build 1.1

BLAST Schizosaccharomyces pombe sequences

Chromosome: [ I ] II III MT

Master Map: Genes On Sequence

Summary of Maps

Region Displayed: 0-5,600K bp

Download/View Sequence

	Symbol	O	Links						E	Description
	SPAC24H6.10c		genedb	sv	pr	dl	mm	hm	external	phospho-2-dehydro-3-deoxyheptonate aldolase (predicted); shikimate pathway (1st step); similar to S. cerevisiae ARO3 and ARO4
	SPAC227.02c		genedb	sv	pr	dl	mm		external	eukaryotic conserved protein; similar to S. cerevisiae YPR143W; S. cerevisiae YPR143W is null lethal; predicted coiled-coil region
	SPAC1296.06		genedb	sv	pr	dl	mm	hm	external	NADPH cytochrome reductase; similar to S. cerevisiae TAH18
	SPAC4G8.11c		genedb	sv	pr	dl	mm		external	involved in mitochondrial F1-F0 ATPase assembly (predicted); similar to S. cerevisiae ATP10
	SPAC30D11.09		genedb	sv	pr	dl	mm	hm	external	eukaryotic conserved protein; zinc finger protein (inferred from context); involved in RNA processing (predicted); complexed with Cdc5p (PMID 11884590); similar to S. cerevisiae YGR093W
	rpl37		genedb	sv	pr	dl	mm	hm	external	60S ribosomal protein L37; similar to S. cerevisiae RPL37A and RPL37B; similar to S. pombe rpl3701 and rpl3702 (paralogs)
	SPAC6F12.13c		genedb	sv	pr	dl	mm	hm	external	farnesyl pyrophosphate synthetase (required); similar to S. cerevisiae FPP1
	SPAC1002.20		genedb	sv	pr	dl	mm		external	sequence orphan
	SPAP14E8.04		genedb	sv	pr	dl	mm	hm	external	zinc metallopeptidase (predicted); peptidase family M48; 1 predicted transmembrane helix; similar to S. cerevisiae YKR087C
	SPAC607.03c		genedb	sv	pr	dl	mm	hm	external	U4/U6.U5 snRNP component; involved in mRNA splicing; possibly binds C/D snoRNA; ribonucleoprotein (RNP) complex (predicted) (PMID 12068309); small subunit (SSU) processome component (predicted) (PMID 12068309); involved in rRNA processing (predicted) (PMID 12068309); localization nucleolus (predicted) (PMID 12068309); similar to S. cerevisiae SNU13
	SPAC23C11.07		genedb	sv	pr	dl	mm		external	hypothetical protein; sequence orphan; has transcript profile on microarray
	mra1		genedb	sv	pr	dl	mm	hm	external	downstream factor of ras; involved in cell growth (required) (PMID 9133664); involved in mating (required) (PMID 9133664); involved in ribosome biogenesis and assembly (predicted); localization nucleolar (predicted); similar to S. cerevisiae YLR186W
	cdc24		genedb	sv	pr	dl	mm		external	involved in DNA replication (required); essential; no apparent orthologs
	SPAPYUK71.03c		genedb	sv	pr	dl	mm	hm	external	C2 domain; similar to S. pombe SPCC962.01; similar to S. cerevisiae YML072C and YNL087W
	SPAC1834.10c		genedb	sv	pr	dl	mm		external	hypothetical protein; sequence orphan
	SPAC1782.11		genedb	sv	pr	dl	mm	hm	external	adenosine-5'-phosphosulfate 3'-phosphotransferase (adenylylsulfate kinase) (predicted); sulfate assimilation pathway; similar to S. cerevisiae MET14
	SPAC1B3.05		genedb	sv	pr	dl	mm	hm	external	CCR4-Not complex (predicted); similar to S. cerevisiae NOT3
	SPAC29A4.19c		genedb	sv	pr	dl	mm		external	P-type ATPase (PMID 12707717); P5 type (PMID 12707717); unknown specificity (PMID 12707717); similar to S. cerevisiae YOR291W
	SPAC14C4.06c		genedb	sv	pr	dl	mm		external	zinc finger protein (inferred); similar to S. cerevisiae YGL122C; localization nucleus (predicted); localization cytoplasm (predicted); involved in nucleocytoplasmic transport; involved in nuclear export (predicted); involved in poly(A)+ mRNA-nucleus export (predicted); RNA-binding protein; poly(A) binding (predicted)~novel or divergent zinc finger, no family identified but similar to zf-CCCH
	SPAC869.08		genedb	sv	pr	dl	mm	hm	external	protein-l-isoaspartate O-methyltransferase (predicted); no apparent S. cerevisiae ortholog

Sequence

SPAC1002.20 Gene

SPAC1296.06 Gene

SPAC14C4.06c Gene

SPAC1782.11 Gene

SPAC1834.10c Gene

SPAC1B3.05 Gene

SPAC227.02c Gene

SPAC23C11.07 Gene

SPAC24H6.10c Gene

SPAC29A4.19c Gene

SPAC30D11.09 Gene

Aliases: cwf19

SPAC4G8.11c Gene

Aliases: atp10

SPAC607.03c Gene

Aliases: snu13

SPAC6F12.13c Gene

SPAC869.08 Gene

SPAP14E8.04 Gene

SPAPYUK71.03c Gene

cdc24 Gene

Aliases: SPAC8F11.07c

mra1 Gene

Aliases: SPAC18G6.07c

rpl37 Gene

Aliases: SPAPB17E12.05, rpl3703

Chromosome: I
Position: 1 - 5,572,983 (5.6M)plus

Chromosome: I
Position: 1,823,972 - 1,824,277 (306bp)plus

Chromosome: I
Position: 719,447 - 721,410 (1,964bp)plus

Chromosome: I
Position: 5,232,655 - 5,233,667 (1,013bp)minus

Chromosome: I
Position: 4,767,642 - 4,768,356 (715bp)plus

Chromosome: I
Position: 4,711,564 - 4,712,161 (598bp)minus

Chromosome: I
Position: 4,928,651 - 4,930,599 (1,949bp)plus

Chromosome: I
Position: 501,767 - 502,384 (618bp)minus

Chromosome: I
Position: 2,144,894 - 2,145,226 (333bp)plus

Chromosome: I
Position: 468,720 - 469,826 (1,107bp)plus

Chromosome: I
Position: 5,100,711 - 5,104,143 (3,433bp)plus

Chromosome: I
Position: 1,101,741 - 1,103,747 (2,007bp)minus

Chromosome: I
Position: 782,142 - 783,144 (1,003bp)minus

Chromosome: I
Position: 2,040,936 - 2,041,463 (528bp)minus

Chromosome: I
Position: 1,338,452 - 1,339,700 (1,249bp)minus

Chromosome: I
Position: 5,492,123 - 5,492,815 (693bp)minus

Chromosome: I
Position: 1,926,739 - 1,927,752 (1,014bp)plus

Chromosome: I
Position: 2,903,369 - 2,907,046 (3,678bp)minus

Chromosome: I
Position: 2,863,705 - 2,865,826 (2,122bp)minus

Chromosome: I
Position: 2,230,333 - 2,231,412 (1,080bp)minus

Chromosome: I
Position: 1,275,535 - 1,275,871 (337bp)plus

Summary of Maps:

Map 1: Contig

Region Displayed: 0-5,600K bp

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Total Contigs On Chromosome: 1

Contigs Labeled: 1 Total Contigs in Region: 1

Map 2: RefSeq Transcripts On Sequence

Region Displayed: 0-5,600K bp

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Total RefSeq Transcripts On Chromosome: 2273

RefSeq Transcripts Labeled: 34 Total RefSeq Transcripts in Region: 2273

Map 3: Genes On Sequence

Region Displayed: 0-5,600K bp

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Total Genes On Chromosome: 2369

Genes Labeled: 20 Total Genes in Region: 2369

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