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Mus musculus (laboratory mouse) Build 37.1 (Current)

BLAST The Mouse Genome

Chromosome: [ 1 ] 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 X Y MT

Master Map: Gene Traps

Summary of Maps

Region Displayed: 0-195M bp

Download/View Sequence/Evidence

	Symbol	O	Links	Type	% identity	% coverage	Bit score	Strain
	CG512466.1			cDNA	99.40%	98.19%	160	129Sv/Ev
	CG552344.1			cDNA	99.55%	93.58%	232.5	129Sv/Ev
	CG537786.1			cDNA	99.65%	100.00%	145	129Sv/Ev
	CG502398.1			cDNA	99.50%	99.46%	360	129Sv/Ev
	CG660785.1			cDNA	100.00%	100.00%	214.5	129Sv/Ev
	CG665521.1			cDNA	99.40%	99.61%	165.33	129Sv/Ev
	CL315383.1		IGTC	cDNA	100.00%	100.00%	48	129 ola
	CL525477.5		IGTC	cDNA	99.00%	100.00%	173.67	129 OLA
	CG628224.1			cDNA	99.60%	96.36%	124.5	129Sv/Ev
	CG542659.1			cDNA	97.10%	99.64%	242	129Sv/Ev
	CG583296.1			cDNA	97.10%	100.00%	394	129Sv/Ev
	CG784668.1		IGTC	cDNA	100.00%	100.00%	113	129 ola
	CG495991.1			cDNA	99.40%	98.73%	296	129Sv/Ev
	CG621606.1			cDNA	98.65%	100.00%	69	129Sv/Ev
	CG474469.1			cDNA	98.40%	100.00%	60	129Sv/Ev
	CG483140.1			cDNA	100.00%	100.00%	75	129Sv/Ev
	CG588012.1			cDNA	99.37%	99.67%	97.67	129Sv/Ev
	CC248986.1		IGTC	cDNA	98.88%	100.00%	88.8	129 ola
	CG633232.1			cDNA	99.50%	97.50%	159.33	129Sv/Ev
	CG626204.1			cDNA	96.20%	96.98%	106.5	129Sv/Ev
	CG594854.1			cDNA	99.65%	99.76%	100.75	129Sv/Ev

Sequence

Sequence

Sequence

Sequence

Sequence

Sequence

Sequence

Col3a1 Gene

Aliases: Ms10w, MMS10-W, mKIAA4231

Crygc Gene

Fcer1g Gene

Aliases: CD23, FcR[g], FcRgamma, FcR-gamma

Srgap2 Gene

Aliases: FBP2, srGAP3

Il1r2 Gene

Aliases: CD121b

Myo1b Gene

Aliases: myosin-1b

Pou3f3 Gene

Aliases: Skin1

Sele Gene

Aliases: CD62E, E-selectin

Tsn Gene

Aliases: TB-RBP

Nit1 Gene

Nenf Gene

Aliases: Spuf, SCIRP10

Ilkap Gene

Aliases: PP2C-DELTA

Tmco1 Gene

Klhl30 Gene

Angptl1 Gene

Aliases: ANG3, ANGY, ARP1, ANGPT3

Slamf8 Gene

Aliases: Blame, SBBI42

D630023F18Rik Gene

Rnpepl1 Gene

BC034090 Gene

Aliases: mKIAA1614, 6820428L09

E030049G20Rik Gene

Aliases: Nap5, Erih1, Erih2, 8430408F21, D130011D22Rik

Rcor3 Gene

AI848100 Gene

Aliases: 4732491B11

Slc39a10 Gene

Aliases: mKIAA1265, 5430433I10

Klhl12 Gene

Fcgr4 Gene

Aliases: CD16-2, FcgRIV, FcgammaRIV

Acmsd Gene

B430105G09Rik Gene

9130211I03Rik Gene

Aliases: Snft

LOC545302 Gene

Defb17 Gene

EG240853 Gene

EG433319 Gene

EG545306 Gene

EG665109 Gene

LOC677427 Gene

Sequence

Sequence

Sequence

Sequence

Sequence

Sequence

Sequence

Sequence

Sequence

Sequence

Sequence

Sequence

Sequence

Sequence

Sequence

Sequence

Sequence

Sequence

Sequence

Sequence

Sequence

UniGene

UniGene

UniGene

UniGene

UniGene

UniGene

UniGene

UniGene

UniGene

UniGene

UniGene

UniGene

UniGene

UniGene

UniGene

UniGene

UniGene

UniGene

UniGene

UniGene

UniGene

UniGene

UniGene

UniGene

UniGene

UniGene

UniGene

UniGene

UniGene

UniGene

UniGene

UniGene

UniGene

UniGene

UniGene

Chromosome: 1
Position: 3,000,001 - 22,423,349 (19.4M)plus

Chromosome: 1
Position: 22,473,350 - 75,102,130 (52.6M)plus

Chromosome: 1
Position: 75,118,131 - 85,343,678 (10.2M)plus

Chromosome: 1
Position: 87,343,679 - 157,965,873 (70.6M)plus

Chromosome: 1
Position: 158,098,874 - 184,921,810 (26.8M)plus

Chromosome: 1
Position: 185,327,811 - 193,825,657 (8.5M)plus

Chromosome: 1
Position: 193,875,658 - 197,195,432 (3.3M)plus

Chromosome: 1
Position: 107,352,549 - 107,352,596 (48bp)plus

Chromosome: 1
Position: 123,456,709 - 123,458,341 (1,633bp)minus

Chromosome: 1
Position: 89,561,957 - 89,566,394 (4,438bp)plus

Chromosome: 1
Position: 136,456,970 - 136,481,806 (24,837bp)plus

Chromosome: 1
Position: 72,243,094 - 72,254,382 (11,289bp)plus

Chromosome: 1
Position: 173,182,668 - 173,184,072 (1,405bp)plus

Chromosome: 1
Position: 129,678,405 - 129,688,437 (10,033bp)minus

Chromosome: 1
Position: 174,435,278 - 174,436,750 (1,473bp)plus

Chromosome: 1
Position: 138,564,739 - 138,571,865 (7,127bp)plus

Chromosome: 1
Position: 178,718,506 - 178,731,865 (13,360bp)minus

Chromosome: 1
Position: 169,156,599 - 169,167,781 (11,183bp)minus

Chromosome: 1
Position: 136,402,686 - 136,403,134 (449bp)plus

Chromosome: 1
Position: 36,536,379 - 36,543,979 (7,601bp)minus

Chromosome: 1
Position: 133,770,989 - 133,771,263 (275bp)minus

Chromosome: 1
Position: 53,812,426 - 53,817,213 (4,788bp)minus

Chromosome: 1
Position: 9,715,273 - 9,715,435 (163bp)minus

Chromosome: 1
Position: 64,643,811 - 64,644,180 (370bp)plus

Chromosome: 1
Position: 138,553,372 - 138,553,681 (310bp)plus

Chromosome: 1
Position: 155,036,575 - 155,036,649 (75bp)plus

Chromosome: 1
Position: 154,762,819 - 154,762,881 (63bp)minus

Chromosome: 1
Position: 172,677,238 - 172,724,882 (47,645bp)minus

Chromosome: 1
Position: 78,405,337 - 196,918,083 (118.5M)

Chromosome: 1
Position: 72,620,473 - 88,923,065 (16.3M)

Chromosome: 1
Position: 60,568,934 - 63,635,253 (3.1M)

Chromosome: 1
Position: 95,200,981 - 95,231,517 (30,537bp)

Chromosome: 1
Position: 3,000,001 - 202,526,509 (199.5M)

Chromosome: 1
Position: 95,236,555 - 152,271,386 (57M)

Chromosome: 1
Position: 3,000,001 - 197,195,432 (194.2M)

Chromosome: 1
Position: 45,368,491 - 45,405,865 (37,375bp)plus

Chromosome: 1
Position: 65,118,105 - 65,120,095 (1,991bp)minus

Chromosome: 1
Position: 173,159,703 - 173,164,480 (4,778bp)minus

Chromosome: 1
Position: 133,181,828 - 133,423,938 (242.1K)minus

Chromosome: 1
Position: 40,141,613 - 40,182,070 (40,458bp)plus

Chromosome: 1
Position: 51,806,609 - 51,972,796 (166.2K)minus

Chromosome: 1
Position: 42,753,991 - 42,757,055 (3,065bp)plus

Chromosome: 1
Position: 165,978,365 - 165,987,808 (9,444bp)plus

Chromosome: 1
Position: 120,195,094 - 120,207,709 (12,616bp)minus

Chromosome: 1
Position: 173,272,375 - 173,275,757 (3,383bp)minus

Chromosome: 1
Position: 193,130,676 - 193,141,997 (11,322bp)minus

Chromosome: 1
Position: 93,272,408 - 93,295,360 (22,953bp)minus

Chromosome: 1
Position: 169,238,801 - 169,264,109 (25,309bp)plus

Chromosome: 1
Position: 93,247,650 - 93,258,981 (11,332bp)plus

Chromosome: 1
Position: 158,769,154 - 158,791,209 (22,056bp)plus

Chromosome: 1
Position: 174,511,508 - 174,520,699 (9,192bp)minus

Chromosome: 1
Position: 65,153,887 - 65,169,767 (15,881bp)minus

Chromosome: 1
Position: 94,807,982 - 94,817,157 (9,176bp)plus

Chromosome: 1
Position: 157,059,601 - 157,089,407 (29,807bp)minus

Chromosome: 1
Position: 127,810,213 - 128,727,209 (0.9M)minus

Chromosome: 1
Position: 193,924,340 - 193,961,669 (37,330bp)minus

Chromosome: 1
Position: 163,746,243 - 163,807,276 (61,034bp)minus

Chromosome: 1
Position: 46,864,389 - 46,910,354 (45,966bp)minus

Chromosome: 1
Position: 136,352,132 - 136,387,450 (35,319bp)plus

Chromosome: 1
Position: 172,949,070 - 172,959,882 (10,813bp)plus

Chromosome: 1
Position: 129,625,990 - 129,664,141 (38,152bp)plus

Chromosome: 1
Position: 59,819,053 - 59,821,095 (2,043bp)minus

Chromosome: 1
Position: 192,922,293 - 192,932,822 (10,530bp)plus

Chromosome: 1
Position: 7,167,786 - 7,169,831 (2,046bp)plus

Chromosome: 1
Position: 18,250,605 - 18,255,161 (4,557bp)minus

Chromosome: 1
Position: 161,098,219 - 161,098,826 (608bp)minus

Chromosome: 1
Position: 72,050,824 - 72,051,389 (566bp)plus

Chromosome: 1
Position: 16,757,094 - 16,802,108 (45,015bp)minus

Chromosome: 1
Position: 163,750,532 - 163,752,856 (2,325bp)plus

Chromosome: 1
Position: 27,369,762 - 27,370,722 (961bp)minus

Chromosome: 1
Position: 174,106,807 - 174,145,030 (38,224bp)

Chromosome: 1
Position: 63,210,971 - 63,242,683 (31,713bp)

Chromosome: 1
Position: 121,989,540 - 122,029,275 (39,736bp)

Chromosome: 1
Position: 20,781,894 - 20,810,978 (29,085bp)

Chromosome: 1
Position: 130,215,941 - 130,256,282 (40,342bp)

Chromosome: 1
Position: 45,419,295 - 45,566,285 (147K)

Chromosome: 1
Position: 88,405,180 - 88,447,847 (42,668bp)

Chromosome: 1
Position: 72,741,920 - 72,771,517 (29,598bp)

Chromosome: 1
Position: 58,443,598 - 58,479,722 (36,125bp)

Chromosome: 1
Position: 13,539,101 - 13,586,412 (47,312bp)

Chromosome: 1
Position: 87,781,308 - 87,814,770 (33,463bp)

Chromosome: 1
Position: 95,296,085 - 95,375,494 (79,410bp)

Chromosome: 1
Position: 174,012,660 - 174,069,311 (56,652bp)

Chromosome: 1
Position: 153,187,415 - 153,219,335 (31,921bp)

Chromosome: 1
Position: 34,857,398 - 34,899,910 (42,513bp)

Chromosome: 1
Position: 182,722,066 - 182,757,108 (35,043bp)

Chromosome: 1
Position: 88,226,444 - 88,271,780 (45,337bp)

Chromosome: 1
Position: 187,182,005 - 187,252,239 (70,235bp)

Chromosome: 1
Position: 152,239,968 - 152,310,515 (70,548bp)

Chromosome: 1
Position: 127,270,568 - 127,341,019 (70,452bp)

Chromosome: 1
Position: 163,162,627 - 163,188,744 (26,118bp)

Chromosome: 1
Position: 71,617,877 - 71,699,808 (81,932bp)

Chromosome: 1
Position: 84,703,986 - 84,843,095 (139.1K)

Chromosome: 1
Position: 45,358,674 - 45,426,528 (67,855bp)

Chromosome: 1
Position: 134,252,285 - 134,289,344 (37,060bp)

Chromosome: 1
Position: 182,499,013 - 182,550,909 (51,897bp)

Chromosome: 1
Position: 55,025,658 - 55,100,576 (74,919bp)

Chromosome: 1
Position: 87,952,127 - 88,045,334 (93,208bp)

Chromosome: 1
Position: 154,601,362 - 154,629,505 (28,144bp)

Chromosome: 1
Position: 89,951,968 - 90,125,936 (174K)

Chromosome: 1
Position: 55,120,156 - 55,152,298 (32,143bp)

Chromosome: 1
Position: 16,078,380 - 16,110,279 (31,900bp)

Chromosome: 1
Position: 72,891,691 - 72,933,409 (41,719bp)

Chromosome: 1
Position: 180,241,036 - 180,286,547 (45,512bp)

Chromosome: 1
Position: 95,375,541 - 95,431,572 (56,032bp)

Summary of Maps:

Map 1: Assembly

Region Displayed: 0-195M bp

Download/View Sequence/Evidence

Total Assembly On Chromosome: 7 [5 not localized]

Assembly Labeled: 7 Total Assembly in Region: 7

Map 2: Contig

Region Displayed: 0-195M bp

Download/View Sequence/Evidence

Total Contigs On Chromosome: 7 [5 not localized]

Contigs Labeled: 7 Total Contigs in Region: 7

Map 3: Mus musculus UniGene Clusters

Region Displayed: 0-195M bp

Download/View Sequence/Evidence

Total Transcript alignments On Chromosome: 5098 [121 not localized]

UniGene Clusters Labeled: 35 Total Transcript alignments in Region: 5067

Histogram Data: Tick Width=374,491bp/pixel, Max Height=4725 transcripts (logarithmic scale)

Map 4: Genes On Sequence

Region Displayed: 0-195M bp

Download/View Sequence/Evidence

Total Genes On Chromosome: 1819 [28 not localized]

Genes Labeled: 35 Total Genes in Region: 1805

Map 5: Gene Traps

Region Displayed: 0-195M bp

Download/View Sequence/Evidence

Total Gene Traps On Chromosome: 9189 [28 not localized]

Gene Traps Labeled: 21 Total Gene Traps in Region: 9176

Mouse genome overview page (Build 37.1)
Mouse genome overview page (Build 36.1)

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