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Bos taurus (cattle) Btau_4.0 (Current)

BLAST Cow Sequences

Chromosome: 1 [ 2 ] 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 X Y MT

Master Map: Genes On Sequence

Summary of Maps

Region Displayed: 0-126M bp

Download/View Sequence/Evidence

	Symbol	O	Links							E	Description
	PLEKHB2		sv	pr	dl	ev	mm	SNP		best RefSeq	pleckstrin homology domain containing, family B (evectins) member 2
	MGC139239		sv	pr	dl	ev	mm	SNP		best RefSeq	hypothetical LOC613328
	TTC30B		sv	pr	dl	ev	mm			best RefSeq	tetratricopeptide repeat domain 30B
	HOXD11		sv	pr	dl	ev	mm			mRNA	homeobox D11
	KIAA1715		sv	pr	dl	ev	mm	SNP		best RefSeq	KIAA1715
	METTL8		sv	pr	dl	ev	mm	SNP		mRNA	methyltransferase like 8
	STK39		sv	pr	dl	ev	mm	SNP		best RefSeq	serine threonine kinase 39 (STE20/SPS1 homolog, yeast)
	LOC100138148		sv	pr	dl	ev	mm			mRNA	hypothetical protein LOC100138148
	KCNJ3		sv	pr	dl	ev	mm	SNP		mRNA	potassium inwardly-rectifying channel, subfamily J, member 3
	RPRM		sv	pr	dl	ev	mm			best RefSeq	reprimo, TP53 dependent G2 arrest mediator candidate
	PTMA		sv	pr	dl	ev	mm			best RefSeq	prothymosin, alpha (gene sequence 28)
	MKI67IP		sv	pr	dl	ev	mm			best RefSeq	MKI67 (FHA domain) interacting nucleolar phosphoprotein
	LOC100140286		sv	pr	dl	ev	mm			mRNA	hypothetical protein LOC100140286
	KLF7		sv	pr	dl	ev	mm	SNP		mRNA	Kruppel-like factor 7 (ubiquitous)
	ARPC2		sv	pr	dl	ev	mm	SNP		best RefSeq	actin related protein 2/3 complex, subunit 2, 34kDa
	LOC513894		sv	pr	dl	ev	mm	SNP		mRNA	similar to CAVP-target protein (CAVPT)
	LOC100139312		sv	pr	dl	ev	mm			mRNA	hypothetical protein LOC100139312
	KCNE4		sv	pr	dl	ev	mm	SNP		best RefSeq	potassium voltage-gated channel, Isk-related family, member 4
	SCG2		sv	pr	dl	ev	mm	SNP	sts	best RefSeq	secretogranin II (chromogranin C)
	CUL3		sv	pr	dl	ev	mm	SNP		mRNA	cullin 3
	COL4A4		sv	pr	dl	ev	mm	SNP		mRNA	collagen, type IV, alpha 4
	TSSK3		sv	pr	dl	ev	mm			mRNA	testis-specific serine kinase 3

Sequence

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SCG2 Gene

COL4A4 Gene

METTL8 Gene

Aliases: MGC142470

MKI67IP Gene

Aliases: MGC127116

STK39 Gene

KIAA1715 Gene

Aliases: MGC139734

KLF7 Gene

TTC30B Gene

ARPC2 Gene

Aliases: MGC126898

MGC139239 Gene

RPRM Gene

PTMA Gene

KCNE4 Gene

Aliases: MiRP3, MGC155174

PLEKHB2 Gene

Aliases: MGC142723

LOC513894 Gene

KCNJ3 Gene

CUL3 Gene

TSSK3 Gene

HOXD11 Gene

LOC100138148 Gene

LOC100139312 Gene

LOC100140286 Gene

Chromosome: 2
Position: 6,147,735 - 6,159,142 (11,408bp)plus

Chromosome: 2
Position: 7,142,258 - 8,151,627 (1M)plus

Chromosome: 2
Position: 8,156,628 - 9,681,161 (1.5M)plus

Chromosome: 2
Position: 9,686,162 - 9,712,312 (26,151bp)plus

Chromosome: 2
Position: 11,193,988 - 11,815,240 (0.6M)plus

Chromosome: 2
Position: 11,857,540 - 15,470,110 (3.6M)plus

Chromosome: 2
Position: 15,475,111 - 16,274,323 (0.8M)plus

Chromosome: 2
Position: 16,279,324 - 16,364,648 (85,325bp)plus

Chromosome: 2
Position: 16,369,649 - 18,108,279 (1.7M)plus

Chromosome: 2
Position: 23,709,638 - 23,755,973 (46,336bp)plus

Chromosome: 2
Position: 28,007,365 - 28,030,721 (23,357bp)plus

Chromosome: 2
Position: 30,754,629 - 34,862,554 (4.1M)plus

Chromosome: 2
Position: 34,867,555 - 34,914,074 (46,520bp)plus

Chromosome: 2
Position: 34,960,866 - 36,953,620 (2M)plus

Chromosome: 2
Position: 36,958,621 - 37,880,367 (0.9M)plus

Chromosome: 2
Position: 44,917,178 - 45,327,601 (410.4K)plus

Chromosome: 2
Position: 45,332,602 - 45,523,436 (190.8K)plus

Chromosome: 2
Position: 49,826,023 - 51,211,296 (1.4M)plus

Chromosome: 2
Position: 51,216,297 - 51,255,625 (39,329bp)plus

Chromosome: 2
Position: 62,947,486 - 62,984,965 (37,480bp)plus

Chromosome: 2
Position: 63,239,678 - 63,283,552 (43,875bp)plus

Chromosome: 2
Position: 67,475,558 - 72,184,565 (4.7M)plus

Chromosome: 2
Position: 74,080,141 - 74,384,338 (304.2K)plus

Chromosome: 2
Position: 74,450,525 - 76,511,765 (2.1M)plus

Chromosome: 2
Position: 78,381,938 - 80,584,224 (2.2M)plus

Chromosome: 2
Position: 80,589,225 - 80,944,380 (355.2K)plus

Chromosome: 2
Position: 83,711,614 - 86,575,829 (2.9M)plus

Chromosome: 2
Position: 86,742,227 - 86,869,507 (127.3K)plus

Chromosome: 2
Position: 87,987,292 - 89,850,321 (1.9M)plus

Chromosome: 2
Position: 99,297,579 - 100,282,612 (1M)plus

Chromosome: 2
Position: 101,697,871 - 103,014,478 (1.3M)plus

Chromosome: 2
Position: 108,215,214 - 108,480,332 (265.1K)unknown

Chromosome: 2
Position: 108,485,333 - 109,543,387 (1.1M)plus

Chromosome: 2
Position: 114,934,780 - 115,004,515 (69,736bp)plus

Chromosome: 2
Position: 115,288,538 - 115,862,875 (0.6M)plus

Chromosome: 2
Position: 119,719,497 - 119,782,066 (62,570bp)plus

Chromosome: 2
Position: 121,576,439 - 121,925,989 (349.6K)plus

Chromosome: 2
Position: 116,310,783 - 116,316,394 (5,612bp)minus

Chromosome: 2
Position: 119,799,819 - 119,833,154 (33,336bp)minus

Chromosome: 2
Position: 25,869,343 - 25,953,695 (84,353bp)plus

Chromosome: 2
Position: 76,997,982 - 77,008,431 (10,450bp)minus

Chromosome: 2
Position: 28,864,021 - 28,958,900 (94,880bp)plus

Chromosome: 2
Position: 21,565,224 - 21,658,021 (92,798bp)plus

Chromosome: 2
Position: 100,455,043 - 100,556,568 (101.5K)minus

Chromosome: 2
Position: 19,896,238 - 19,898,878 (2,641bp)plus

Chromosome: 2
Position: 110,657,742 - 110,685,359 (27,618bp)plus

Chromosome: 2
Position: 17,658,309 - 18,045,535 (387.2K)plus

Chromosome: 2
Position: 44,185,028 - 44,186,474 (1,447bp)plus

Chromosome: 2
Position: 50,091,320 - 50,092,358 (1,039bp)plus

Chromosome: 2
Position: 115,706,935 - 115,710,122 (3,188bp)plus

Chromosome: 2
Position: 1,876,214 - 1,925,332 (49,119bp)plus

Chromosome: 2
Position: 111,827,917 - 111,830,219 (2,303bp)plus

Chromosome: 2
Position: 42,675,717 - 42,835,216 (159.5K)minus

Chromosome: 2
Position: 117,134,164 - 117,250,145 (116K)minus

Chromosome: 2
Position: 125,420,020 - 125,421,970 (1,951bp)minus

Chromosome: 2
Position: 21,467,582 - 21,469,940 (2,359bp)minus

Chromosome: 2
Position: 32,966,201 - 32,970,008 (3,808bp)minus

Chromosome: 2
Position: 112,557,413 - 112,559,602 (2,190bp)minus

Chromosome: 2
Position: 98,279,204 - 98,283,022 (3,819bp)minus

Summary of Maps:

Map 1: Contig

Region Displayed: 0-126M bp

Download/View Sequence/Evidence

Total Contigs On Chromosome: 119

Contigs Labeled: 37 Total Contigs in Region: 111

Map 2: unknown map "bes"

Region Displayed: 0.00-0.90 unknown_units

Map 3: Genes On Sequence

Region Displayed: 0-126M bp

Download/View Sequence/Evidence

Total Genes On Chromosome: 1020

Genes Labeled: 22 Total Genes in Region: 787

Cow genome overview page (Btau_4.0)
Cow genome overview page (Build 3.1 (based on Btau_3.1))

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