The following is an example searching a human IgH nucleotide sequence (GenBank record U32602) against the Ig germline V genes database.

The first three sequences shown are the top germline V gene matches, followed by D and J gene matches. Further down the list are the rest of the germline V gene matches.

The colored balls are not displayed for the germline V gene database search. For other details, please see Example 1. 


GL
ID%                          <----------------------------------------------FWR3-------------------
                                                                                                   
IF
               U32602        ----------------------------------------------------------------------     


                              R  V  T  M  T  E  D  T  S  T  D  T  A  Y  M  E  L  S  S  L  R  S  E  
 
100(21/21)     VH1-24   199  AGAGTCACCATGACCGAGGACACATCTACAGACACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGG  268


 
100(20/20)     VH4-55P       ----------------------------------------------------------------------     


 
100(20/20)     VH4-61        ----------------------------------------------------------------------     


 
100(18/18)     D1-26         ----------------------------------------------------------------------     


 
77.8(14/18)    D6-25         ----------------------------------------------------------------------     


 
81.2(13/16)    D6-13         ----------------------------------------------------------------------     


 
97.1(33/34)    JH4           ----------------------------------------------------------------------     


 
90.9(30/33)    JH5           ----------------------------------------------------------------------     


 
100(20/20)     VH3-72        ----------------------------------------------------------------------     


 
100(20/20)     VH4-4         ----------------------------------------------------------------------     


 
100(20/20)     VH1-8         ----------------------------------------------------------------------     


 
100(20/20)     VH3-53        ----------------------------------------------------------------------     


 
100(20/20)     VH1-2         ----------------------------------------------------------------------     


 
100(20/20)     VH4-59        ----------------------------------------------------------------------     


 
100(20/20)     VH3-38        ----------------------------------------------------------------------     


 
100(20/20)     VH3-11        ----------------------------------------------------------------------     


 
100(20/20)     VH3-71P       ----------------------------------------------------------------------     


 
100(20/20)     VH4-31        ----------------------------------------------------------------------     


 
100(20/20)     VH1-69        ----------------------------------------------------------------------     


 
100(20/20)     VH1-58        ----------------------------------------------------------------------     


 
100(20/20)     VH4-28        ----------------------------------------------------------------------     


 
100(20/20)     VH1-46        ----------------------------------------------------------------------     


 
100(20/20)     VH1-18        ----------------------------------------------------------------------     


 
95.2(20/21)    VH3-74        ----------------------------------------------------------------------     


 
95.2(20/21)    VH3-13        ----------------------------------------------------------------------     


 
95.2(20/21)    VH6-1         ----------------------------------------------------------------------     


 
95.2(20/21)    VH3-9         ----------------------------------------------------------------------     


 
95.0(19/20)    VH3-30        ----------------------------------------------------------------------     


 
95.0(19/20)    VH3-23        ----------------------------------------------------------------------     


 
95.0(19/20)    VH3-21        ----------------------------------------------------------------------     


GL
ID%                          ------------------------->  
                                T  A  V  Y  Y  C  A  R    T  G  Y  S  G  S  Y  L  G  F  D  Y  W  G  Q
IF
               U32602   1    --ACGGCCGTGTATTACTGTGCACGG  ACTGGGTATAGTGGGAGCTACTTGGGCTTTGACTACTGGGGCCA  68


                             D  T  A  V  Y  Y  C  A                                                  
 
100(21/21)     VH1-24   269  AC.....................---  --------------------------------------------  291


 
100(20/20)     VH4-55P  271  --....................----  --------------------------------------------  290


 
100(20/20)     VH4-61   274  --....................----  --------------------------------------------  293


 
100(18/18)     D1-26    1    --------------------------  ----..................----------------------  18


 
77.8(14/18)    D6-25    1    --------------------------  ---........CA.CG.....-----------------------  18


 
81.2(13/16)    D6-13    1    --------------------------  ---........CA.C....-------------------------  16


 
97.1(33/34)    JH4      5    --------------------------  --------------------------..................  22


 
90.9(30/33)    JH5      9    --------------------------  ---------------------------..C....C.........  25


 
100(20/20)     VH3-72   277  --....................----  --------------------------------------------  296


 
100(20/20)     VH4-4    268  --....................----  --------------------------------------------  287


 
100(20/20)     VH1-8    271  --....................----  --------------------------------------------  290


 
100(20/20)     VH3-53   268  --....................----  --------------------------------------------  287


 
100(20/20)     VH1-2    271  --....................----  --------------------------------------------  290


 
100(20/20)     VH4-59   268  --....................----  --------------------------------------------  287


 
100(20/20)     VH3-38   265  --....................----  --------------------------------------------  284


 
100(20/20)     VH3-11   271  --....................----  --------------------------------------------  290


 
100(20/20)     VH3-71P  277  --....................----  --------------------------------------------  296


 
100(20/20)     VH4-31   274  --....................----  --------------------------------------------  293


 
100(20/20)     VH1-69   271  --....................----  --------------------------------------------  290


 
100(20/20)     VH1-58   271  --....................----  --------------------------------------------  290


 
100(20/20)     VH4-28   271  --....................----  --------------------------------------------  290


 
100(20/20)     VH1-46   271  --....................----  --------------------------------------------  290


 
100(20/20)     VH1-18   271  --....................----  --------------------------------------------  290


 
95.2(20/21)    VH3-74   271  --.....T...............---  --------------------------------------------  291


 
95.2(20/21)    VH3-13   268  --.....T...............---  --------------------------------------------  288


 
95.2(20/21)    VH6-1    280  --.....T...............---  --------------------------------------------  300


 
95.2(20/21)    VH3-9    271  --......T..............---  --------------------------------------------  291


 
95.0(19/20)    VH3-30   271  --.....T..............----  --------------------------------------------  290


 
95.0(19/20)    VH3-23   271  --........A...........----  --------------------------------------------  290


 
95.0(19/20)    VH3-21   271  --.....T..............----  --------------------------------------------  290


GL
ID%                          
                               G  T  L  V  T 
IF
               U32602   69   GGGAACCCTGGTCACC  84


                                             
 
100(21/21)     VH1-24        ----------------     


 
100(20/20)     VH4-55P       ----------------     


 
100(20/20)     VH4-61        ----------------     


 
100(18/18)     D1-26         ----------------     


 
77.8(14/18)    D6-25         ----------------     


 
81.2(13/16)    D6-13         ----------------     


 
97.1(33/34)    JH4      23   A...............  38


 
90.9(30/33)    JH5      26   A...............  41


 
100(20/20)     VH3-72        ----------------     


 
100(20/20)     VH4-4         ----------------     


 
100(20/20)     VH1-8         ----------------     


 
100(20/20)     VH3-53        ----------------     


 
100(20/20)     VH1-2         ----------------     


 
100(20/20)     VH4-59        ----------------     


 
100(20/20)     VH3-38        ----------------     


 
100(20/20)     VH3-11        ----------------     


 
100(20/20)     VH3-71P       ----------------     


 
100(20/20)     VH4-31        ----------------     


 
100(20/20)     VH1-69        ----------------     


 
100(20/20)     VH1-58        ----------------     


 
100(20/20)     VH4-28        ----------------     


 
100(20/20)     VH1-46        ----------------     


 
100(20/20)     VH1-18        ----------------     


 
95.2(20/21)    VH3-74        ----------------     


 
95.2(20/21)    VH3-13        ----------------     


 
95.2(20/21)    VH6-1         ----------------     


 
95.2(20/21)    VH3-9         ----------------     


 
95.0(19/20)    VH3-30        ----------------     


 
95.0(19/20)    VH3-23        ----------------     


 
95.0(19/20)    VH3-21        ----------------