RefSeq annotates one representative transcript (NM included in AceView variant.b), but Homo sapiens cDNA sequences in GenBank, dbEST, Trace and SRA, filtered against clone rearrangements, coaligned on the genome and clustered in a minimal non-redundant way by the manually supervised AceView program, support at least 28 spliced variants .
AceView synopsis, each blue text links to tables and details
Note that this locus is complex: it appears to produce several proteins with no sequence overlap.
Expression: According to AceView, this gene is
expressed at very high level , 5.9 times the average gene in this release. The
sequence of this gene is defined by
785 GenBank accessions , some from brain (seen 49 times), uterus (34), testis (33), lung (29), placenta (27), eye (20), thymus (19) and 128 other
tissues . We annotate
structural defects or features in 56 cDNA clones.
Alternative mRNA variants and regulation: The gene contains
39 distinct gt-ag introns . Transcription produces
33 different mRNAs , 28 alternatively spliced variants and 5 unspliced forms. There are 10 probable
alternative promotors , 6 non overlapping alternative last exons and 17 validated
alternative polyadenylation sites (see the
diagram ). The mRNAs appear to differ by truncation of the 5' end, truncation of the 3' end, presence or absence of 24
cassette exons , overlapping exons with different boundaries, splicing versus retention of one intron. 369 bp of this gene
are antisense to spliced gene SLC39A6 , raising the possibility of regulated alternate expression.
3 variants were isolated
in vivo , despite the fact that they are predicted targets of
nonsense mediated mRNA decay (NMD).
Efficacy of translation may be reduced by the presence of a shorter translated product (
uORF ) initiating at an AUG upstream of the main open reading frame (in variant aAug10, bAug10, hAug10, jAug10, mAug10, nAug10, pAug10, qAug10).
Function: There are
3 articles specifically referring to this gene in PubMed. Functionally, the gene has been proposed to participate in a
process (regulation of transcription from RNA polymerase II promoter). Proteins are expected to have molecular
functions (DNA binding, RNA polymerase II transcription elongation factor activity) and to
localize in various compartments (cytoplasm, DNA-directed RNA polymerase II, holoenzyme, nucleolus, transcription elongation factor complex, membrane, nucleus). Putative
protein interactors have been described (IKBKAP, JAK1, JAK2, STAT1, STAT3, STAT5B, TYK2).
Protein coding potential: 24 spliced mRNAs putatively encode
good proteins , altogether
21 different isoforms (16 complete, 1 COOH complete, 4 partial ), some containing WD domain, G-beta repeat
[Pfam] , some transmembrane domains, a peroxisomal domain
[Psort2] . The remaining 8 mRNA variants (4 spliced, 4 unspliced; 4 partial) appear not to encode good proteins. Finally proteins from this gene may be modulated by
phosphorylation; ubiquitination , as detailed at PhosphoSite.
Please quote:
AceView: a comprehensive cDNA-supported gene and transcripts annotation, Genome Biology 2006, 7(Suppl 1):S12 .
Map on chromosome 18, links to other databases and other names
Map: This gene ELP2 maps on chromosome 18, at 18q12.2 according to Entrez Gene. In AceView, it covers
48.50 kb , from 33709408 to 33757907 (NCBI 37, August 2010), on the direct strand.
Links to: manual annotations from
PhosphoSite , the
SNP view, gene overviews from
Entrez Gene 55250 ,
GeneCards , expression data from
ECgene ,
UniGene , molecular and other annotations from
UCSC , or our
GOLD analysis.
The previous AceView annotation is
here .
Other names: The gene is also known as ELP2, StIP, SHINC-2, STATIP1, FLJ10879, LOC55250, stersa or skeepler, sneytorbu. It has been described as elongator complex protein 2, stIP1, elongator protein 2, STAT3-interacting protein 1, signal transducer and activator of transcription interacting protein 1, signal transducer and activator of transcription 3 interacting protein 1.
Closest AceView homologs in other species
?
The closest mouse gene , according to BlastP, is the AceView gene
Elp2 (e=0.0).
The closest C.elegans gene , according to BlastP, is the AceView/WormGene
elpc-2 (e=6 10
-93 ), which may contain interesting functional annotation.
The closest A.thaliana gene , according to BlastP, is the AceView gene
AT1G49540 (e= 10
-111 ), which may contain interesting functional annotation
ELP2
Gene expression in 15 primates, 16 tissues, from the NHPRTR project in sFPKM
BAB
SkeletalMuscle
WholeBlood
CHP
Kidney
Liver
Lung
Spleen
CMC
CMM
Cerebellum
HUM
Brain
Colon
Heart
LymphNode
Ovary
Testis
JMI
BoneMarrow
MLM
OWL
PTM
RMC
RMI
Pituitary
SQM
Thymus
MST
SMY
RTL
8.78
26.6
12.4
20.2
8.78
9.41
10.8
10.1
17.6
12.4
21.6
30.6
28.5
28.5
26.6
23.2
21.6
26.6
32.8
49.7
35.1
20.2
15.3
7.64
7.64
6.21
10.1
10.8
6.21
11.6
20.2
13.3
12.4
13.3
24.8
17.6
20.2
16.4
16.4
10.1
15.3
14.3
13.3
14.3
24.8
17.6
21.6
17.6
13.3
8.78
12.4
9.41
11.6
13.3
14.3
14.3
16.4
11.6
14.3
12.4
14.3
10.8
15.3
35.1
12.4
9.41
9.41
21.6
10.1
13.3
15.3
10.8
6.65
16.4
16.4
18.8
10.1
10.8
11.6
15.3
18.8
10.1
17.6
18.8
21.6
21.6
14.3
15.3
13.3
11.6
20.2
13.3
12.4
20.2
15.3
15.3
23.2
9.41
18.8
20.2
14.3
15.3
15.3
17.6
11.6
17.6
24.8
18.8
15.3
18.8
11.6
14.3
20.2
23.2
23.2
17.6
11.6
11.6
20.2
13.3
16.4
21.6
18.8
15.3
12.4
20.2
16.4
17.6
16.4
11.6
20.2
24.8
15.3
20.2
28.5
15.3
17.6
5.79
6.21
5.04
12.4
14.3
20.2
20.2
16.4
8.78
21.6
17.6
30.6
24.8
8.78
16.4
20.2
21.6
14.3
15.3
15.3
Expression
quantiles
None
Weak
1
2
3
4
5
6
7
8
10
20
This gene
All genes
log2 distributions
RNA-seq gene expression profile across 16 selected tissues from the Non-Human Primates Reference Transcriptome Resource (link to
NHPRTR project ).
- Primates:
Apes (
HUM : Human (Illumina BodyMap 2),
CHP : Chimpanzee),
Old World monkeys (
PTM : Pig-Tailed Macaque,
JMI Japanese Macaque,
RMI Rhesus Macaque Indian,
RMC Rhesus Macaque Chinese,
CMM Cynomolgus Macaque Mauritian,
CMC Cynomolgus Macaque Chinese,
BAB Olive Baboon,
SMY Sooty Mangabey);
New World monkeys (
MST common Marmoset,
SQM Squirrel Monkey,
OWL Owl Monkey); and
Lemurs (
MLM Mouse Lemur,
RTL Ring-Tailed Lemur).
- The level for significantly expressed genes is color coded in 8 equal sized bins (light to dark green). Light gray is for weak not-accurately measured expression (2 to 8 reads above intergenic background); dark gray for no expression or no sequence conservation (0 read in gene). The plot to the right shows the distribution of measured expression values in all tissues for
all genes (blue) and for
this gene (green) , in Magic index = log
2 (1000 sFPKM).
You may also examine the strand-specific
genome coverage plots on the experimental AceView/Magic hub at UCSC , by tissue or by species. Tracks may be
slow to load ; please reload if some tracks come up yellow-greenish, and thanks to UCSC for the great work!.
Read more...
About UCSC tracks: you may enjoy the plots for the summed coverage over all primates' libraries (top track), summarizing 3 terabases of stranded RNA-seq. Fragments mapping on the + strand of the genome (from genes on the + strand) are red (or dark), on minus strand blue (or light) and antisense transcribed areas are black or overlaid. The vertical scale for each track is self-adapting. Homozygous SNPs tracks are also presented.
About mapping: Primates body map RNA-seq data were stringently mapped to the human genome using the NCBI Magic pipeline. Normalized results are shown as significant FPKM (sFPKM), which includes corrections on F, K and M, computed from parameters measured directly in each RNA-seq experiment, to render the expression measures more significant and more robust to experimental biases. Only fragments with both reads mapped uniquely and over at least 80+80 bases ending with 8 exact bases on each side of each read, and facing each other in a single site or gene, are included in the computation of the sFPKM/index, in the coverage plots, and in the determination of homozygous SNPs (minimum coverage 10, minimum allele frequency 95%). But be aware that genes whose sequence evolved to become too distant from Human cannot be measured well, this bias can be appreciated in the per-species coverage plots at UCSC.
About libraries: For non-human primates, total RNA libraries used TruSeq, ribozero and the stranded UDG protocol. The human 2010 libraries used the polyA selected non-stranded protocol, with short reads (50, 75 or 50+50 bases); furthermore the insert lengths are larger in human than in the non-human primates (average insert size 187 bp in non-human primates versus 232 bp in human). These protocol differences may impact expression measures for the non polyadenylated genes (or genes with shorter or occasional polyA tails), for the pseudogenes or close gene families (specificity is reduced in humans due to shorter reads), and for the very short genes.
Complete gene on genome diagram:
Compact gene diagram
Gene ELP2
5'
3'
encoded on plus strand of chromosome 18 from 33,709,408 to 33,760,851
63802
48517
4629
5610
58056
66445
109824
88932
94895
a
63802
48517
43419
58056
66445
109824
88932
94895
b
[NM]
63802
233
5610
58056
915
66445
109824
88932
94895
c
63802
10454
58056
66445
109824
88932
94895
d
63802
10454
58056
915
66445
109824
88932
94895
e
63802
388
66445
109824
88932
94895
f
63802
48517
43419
58056
66445
109824
1559
94895
g
761
63802
48517
43419
58056
66445
109824
1559
94895
h
761
63802
10454
58056
vj
66445
109824
88932
94895
i
s
1
vh
5
109824
j
u
12
63802
48517
43419
58056
vk
66445
632
109824
k
vf-u
vd-u
63802
l
ve-u
vl
2
48517
43419
58056
t
94895
m
18
48517
43419
58056
vg
94895
n
332
63802
48517
43419
q
51
94895
o
48517
43419
58056
p
vc-u
2
48517
4629
5610
58056
r
va
23
109824
vb
vi-u
5kb
0
627 bp exon
627 bp exon
273 bp uORF
627 bp exon
627 bp exon
3166 bp [gt-ag] intron
307 GenBank accessions
72495 RNA-seq supporting reads
13910 UHR pooled cells
4359 Brain
4231 Blood
49721 Neuroblastoma
274 Other
(also 7373 Primates bodymap)
79 bp exon
79 bp exon
2990 bp [gt-ag] intron
310 GenBank accessions
64899 RNA-seq supporting reads
11915 UHR pooled cells
3798 Brain
6810 Blood
42101 Neuroblastoma
275 Other
(also 8301 Primates bodymap)
71 bp exon
71 bp exon
1892 bp [gt-ag] intron
310 GenBank accessions
63492 RNA-seq supporting reads
11218 UHR pooled cells
3523 Brain
7524 Blood
40981 Neuroblastoma
246 Other
(also 9615 Primates bodymap)
157 bp exon
157 bp exon
368 bp [gt-ag] intron
271 GenBank accessions
48246 RNA-seq supporting reads
10566 UHR pooled cells
2546 Brain
5939 Blood
28970 Neuroblastoma
225 Other
(also 5805 Primates bodymap)
78 bp exon
78 bp exon
546 bp [gt-ag] intron
18 GenBank accessions
4611 RNA-seq supporting reads
641 UHR pooled cells
377 Brain
442 Blood
3137 Neuroblastoma
14 Other
(also 17 Primates bodymap)
195 bp exon
195 bp exon
1523 bp [gt-ag] intron
7 GenBank accessions
5603 RNA-seq supporting reads
857 UHR pooled cells
463 Brain
403 Blood
3859 Neuroblastoma
21 Other
(also 38 Primates bodymap)
65 bp exon
65 bp exon
1079 bp [gt-ag] intron
100 GenBank accessions
57956 RNA-seq supporting reads
11551 UHR pooled cells
3087 Brain
4837 Blood
38210 Neuroblastoma
271 Other
(also 7712 Primates bodymap)
67 bp exon
67 bp exon
478 bp [gt-ag] intron
63 GenBank accessions
61686 RNA-seq supporting reads
12569 UHR pooled cells
3346 Brain
6084 Blood
39391 Neuroblastoma
296 Other
(also 8378 Primates bodymap)
141 bp exon
141 bp exon
1972 bp [gt-ag] intron
49 GenBank accessions
67666 RNA-seq supporting reads
13910 UHR pooled cells
4074 Brain
6205 Blood
43128 Neuroblastoma
349 Other
(also 8911 Primates bodymap)
96 bp exon
96 bp exon
913 bp [gt-ag] intron
39 GenBank accessions
68576 RNA-seq supporting reads
13292 UHR pooled cells
4056 Brain
7890 Blood
42992 Neuroblastoma
346 Other
(also 5144 Primates bodymap)
101 bp exon
101 bp exon
201 bp [gt-ag] intron
39 GenBank accessions
73766 RNA-seq supporting reads
14659 UHR pooled cells
4373 Brain
7357 Blood
46995 Neuroblastoma
382 Other
(also 7650 Primates bodymap)
132 bp exon
132 bp exon
8468 bp [gt-ag] intron
37 GenBank accessions
72975 RNA-seq supporting reads
14776 UHR pooled cells
4306 Brain
8975 Blood
44566 Neuroblastoma
352 Other
(also 6158 Primates bodymap)
150 bp exon
150 bp exon
1466 bp [gt-ag] intron
49 GenBank accessions
85542 RNA-seq supporting reads
17769 UHR pooled cells
5120 Brain
8499 Blood
53756 Neuroblastoma
398 Other
(also 7978 Primates bodymap)
189 bp exon
189 bp exon
2180 bp [gt-ag] intron
58 GenBank accessions
66387 RNA-seq supporting reads
13707 UHR pooled cells
4113 Brain
6529 Blood
41686 Neuroblastoma
352 Other
(also 6789 Primates bodymap)
70 bp exon
70 bp exon
830 bp [gt-ag] intron
60 GenBank accessions
76378 RNA-seq supporting reads
17018 UHR pooled cells
4805 Brain
4530 Blood
49669 Neuroblastoma
356 Other
(also 6965 Primates bodymap)
96 bp exon
96 bp exon
127 bp [gt-ag] intron
63 GenBank accessions
74437 RNA-seq supporting reads
16650 UHR pooled cells
4432 Brain
6683 Blood
46352 Neuroblastoma
320 Other
(also 7018 Primates bodymap)
58 bp exon
58 bp exon
916 bp [gt-ag] intron
66 GenBank accessions
70151 RNA-seq supporting reads
15923 UHR pooled cells
4270 Brain
4222 Blood
45424 Neuroblastoma
312 Other
(also 5563 Primates bodymap)
73 bp exon
73 bp exon
3470 bp [gt-ag] intron
66 GenBank accessions
109758 RNA-seq supporting reads
23239 UHR pooled cells
6539 Brain
6583 Blood
72821 Neuroblastoma
576 Other
(also 7945 Primates bodymap)
193 bp exon
193 bp exon
2433 bp [gt-ag] intron
75 GenBank accessions
88857 RNA-seq supporting reads
19562 UHR pooled cells
5679 Brain
4243 Blood
59010 Neuroblastoma
363 Other
(also 8438 Primates bodymap)
122 bp exon
122 bp exon
2840 bp [gt-ag] intron
104 GenBank accessions
94791 RNA-seq supporting reads
21445 UHR pooled cells
6003 Brain
4248 Blood
62788 Neuroblastoma
307 Other
(also 7698 Primates bodymap)
134 bp exon
134 bp exon
850 bp [gt-ag] intron
119 GenBank accessions
109791 RNA-seq supporting reads
21827 UHR pooled cells
6414 Brain
3219 Blood
78001 Neuroblastoma
330 Other
(also 5246 Primates bodymap)
114 bp exon
114 bp exon
3324 bp [gt-ag] intron
118 GenBank accessions
158319 RNA-seq supporting reads
31645 UHR pooled cells
10622 Brain
5919 Blood
109666 Neuroblastoma
467 Other
(also 10310 Primates bodymap)
167 bp exon
167 bp exon
21 accessions, some from testis (seen 4 times)
lung (2), adipose tissue (once)
brain (once), eye (once)
167 bp exon
554 bp exon
554 bp exon
273 bp uORF
554 bp exon
554 bp exon
3166 bp [gt-ag] intron
307 GenBank accessions
72495 RNA-seq supporting reads
13910 UHR pooled cells
4359 Brain
4231 Blood
49721 Neuroblastoma
274 Other
(also 7373 Primates bodymap)
79 bp exon
79 bp exon
2990 bp [gt-ag] intron
310 GenBank accessions
64899 RNA-seq supporting reads
11915 UHR pooled cells
3798 Brain
6810 Blood
42101 Neuroblastoma
275 Other
(also 8301 Primates bodymap)
71 bp exon
71 bp exon
1892 bp [gt-ag] intron
310 GenBank accessions
63492 RNA-seq supporting reads
11218 UHR pooled cells
3523 Brain
7524 Blood
40981 Neuroblastoma
246 Other
(also 9615 Primates bodymap)
157 bp exon
157 bp exon
368 bp [gt-ag] intron
271 GenBank accessions
48246 RNA-seq supporting reads
10566 UHR pooled cells
2546 Brain
5939 Blood
28970 Neuroblastoma
225 Other
(also 5805 Primates bodymap)
78 bp exon
78 bp exon
2264 bp [gt-ag] intron
185 GenBank accessions
43234 RNA-seq supporting reads
10469 UHR pooled cells
2395 Brain
2632 Blood
27531 Neuroblastoma
207 Other
(also 6519 Primates bodymap)
65 bp exon
65 bp exon
1079 bp [gt-ag] intron
100 GenBank accessions
57956 RNA-seq supporting reads
11551 UHR pooled cells
3087 Brain
4837 Blood
38210 Neuroblastoma
271 Other
(also 7712 Primates bodymap)
67 bp exon
67 bp exon
478 bp [gt-ag] intron
63 GenBank accessions
61686 RNA-seq supporting reads
12569 UHR pooled cells
3346 Brain
6084 Blood
39391 Neuroblastoma
296 Other
(also 8378 Primates bodymap)
141 bp exon
141 bp exon
1972 bp [gt-ag] intron
49 GenBank accessions
67666 RNA-seq supporting reads
13910 UHR pooled cells
4074 Brain
6205 Blood
43128 Neuroblastoma
349 Other
(also 8911 Primates bodymap)
96 bp exon
96 bp exon
913 bp [gt-ag] intron
39 GenBank accessions
68576 RNA-seq supporting reads
13292 UHR pooled cells
4056 Brain
7890 Blood
42992 Neuroblastoma
346 Other
(also 5144 Primates bodymap)
101 bp exon
101 bp exon
201 bp [gt-ag] intron
39 GenBank accessions
73766 RNA-seq supporting reads
14659 UHR pooled cells
4373 Brain
7357 Blood
46995 Neuroblastoma
382 Other
(also 7650 Primates bodymap)
132 bp exon
132 bp exon
8468 bp [gt-ag] intron
37 GenBank accessions
72975 RNA-seq supporting reads
14776 UHR pooled cells
4306 Brain
8975 Blood
44566 Neuroblastoma
352 Other
(also 6158 Primates bodymap)
150 bp exon
150 bp exon
1466 bp [gt-ag] intron
49 GenBank accessions
85542 RNA-seq supporting reads
17769 UHR pooled cells
5120 Brain
8499 Blood
53756 Neuroblastoma
398 Other
(also 7978 Primates bodymap)
189 bp exon
189 bp exon
2180 bp [gt-ag] intron
58 GenBank accessions
66387 RNA-seq supporting reads
13707 UHR pooled cells
4113 Brain
6529 Blood
41686 Neuroblastoma
352 Other
(also 6789 Primates bodymap)
70 bp exon
70 bp exon
830 bp [gt-ag] intron
60 GenBank accessions
76378 RNA-seq supporting reads
17018 UHR pooled cells
4805 Brain
4530 Blood
49669 Neuroblastoma
356 Other
(also 6965 Primates bodymap)
96 bp exon
96 bp exon
127 bp [gt-ag] intron
63 GenBank accessions
74437 RNA-seq supporting reads
16650 UHR pooled cells
4432 Brain
6683 Blood
46352 Neuroblastoma
320 Other
(also 7018 Primates bodymap)
58 bp exon
58 bp exon
916 bp [gt-ag] intron
66 GenBank accessions
70151 RNA-seq supporting reads
15923 UHR pooled cells
4270 Brain
4222 Blood
45424 Neuroblastoma
312 Other
(also 5563 Primates bodymap)
73 bp exon
73 bp exon
3470 bp [gt-ag] intron
66 GenBank accessions
109758 RNA-seq supporting reads
23239 UHR pooled cells
6539 Brain
6583 Blood
72821 Neuroblastoma
576 Other
(also 7945 Primates bodymap)
193 bp exon
193 bp exon
2433 bp [gt-ag] intron
75 GenBank accessions
88857 RNA-seq supporting reads
19562 UHR pooled cells
5679 Brain
4243 Blood
59010 Neuroblastoma
363 Other
(also 8438 Primates bodymap)
122 bp exon
122 bp exon
2840 bp [gt-ag] intron
104 GenBank accessions
94791 RNA-seq supporting reads
21445 UHR pooled cells
6003 Brain
4248 Blood
62788 Neuroblastoma
307 Other
(also 7698 Primates bodymap)
134 bp exon
134 bp exon
850 bp [gt-ag] intron
119 GenBank accessions
109791 RNA-seq supporting reads
21827 UHR pooled cells
6414 Brain
3219 Blood
78001 Neuroblastoma
330 Other
(also 5246 Primates bodymap)
114 bp exon
114 bp exon
3324 bp [gt-ag] intron
118 GenBank accessions
158319 RNA-seq supporting reads
31645 UHR pooled cells
10622 Brain
5919 Blood
109666 Neuroblastoma
467 Other
(also 10310 Primates bodymap)
236 bp exon
236 bp exon
156 accessions, NM_018255.1
some from brain (seen 21 times)
testis (14), thymus (11)
uterus (8), small intestine (7)
Validated 3' end, 1 accession
236 bp exon
152 bp exon
152 bp exon
3166 bp [gt-ag] intron
307 GenBank accessions
72495 RNA-seq supporting reads
13910 UHR pooled cells
4359 Brain
4231 Blood
49721 Neuroblastoma
274 Other
(also 7373 Primates bodymap)
79 bp exon
2990 bp [gt-ag] intron
310 GenBank accessions
64899 RNA-seq supporting reads
11915 UHR pooled cells
3798 Brain
6810 Blood
42101 Neuroblastoma
275 Other
(also 8301 Primates bodymap)
71 bp exon
1892 bp [gt-ag] intron
310 GenBank accessions
63492 RNA-seq supporting reads
11218 UHR pooled cells
3523 Brain
7524 Blood
40981 Neuroblastoma
246 Other
(also 9615 Primates bodymap)
157 bp exon
992 bp [gt-ag] intron
2 GenBank accessions
231 RNA-seq supporting reads
21 UHR pooled cells
33 Brain
5 Blood
170 Neuroblastoma
2 Other
195 bp exon
1523 bp [gt-ag] intron
7 GenBank accessions
5603 RNA-seq supporting reads
857 UHR pooled cells
463 Brain
403 Blood
3859 Neuroblastoma
21 Other
(also 38 Primates bodymap)
65 bp exon
1079 bp [gt-ag] intron
100 GenBank accessions
57956 RNA-seq supporting reads
11551 UHR pooled cells
3087 Brain
4837 Blood
38210 Neuroblastoma
271 Other
(also 7712 Primates bodymap)
67 bp exon
478 bp [gt-ag] intron
63 GenBank accessions
61686 RNA-seq supporting reads
12569 UHR pooled cells
3346 Brain
6084 Blood
39391 Neuroblastoma
296 Other
(also 8378 Primates bodymap)
141 bp exon
1972 bp [gt-ag] intron
49 GenBank accessions
67666 RNA-seq supporting reads
13910 UHR pooled cells
4074 Brain
6205 Blood
43128 Neuroblastoma
349 Other
(also 8911 Primates bodymap)
96 bp exon
913 bp [gt-ag] intron
39 GenBank accessions
68576 RNA-seq supporting reads
13292 UHR pooled cells
4056 Brain
7890 Blood
42992 Neuroblastoma
346 Other
(also 5144 Primates bodymap)
101 bp exon
8801 bp [gt-ag] intron
3 GenBank accessions
912 RNA-seq supporting reads
158 UHR pooled cells
18 Brain
209 Blood
519 Neuroblastoma
8 Other
(also 10 Primates bodymap)
150 bp exon
1466 bp [gt-ag] intron
49 GenBank accessions
85542 RNA-seq supporting reads
17769 UHR pooled cells
5120 Brain
8499 Blood
53756 Neuroblastoma
398 Other
(also 7978 Primates bodymap)
189 bp exon
2180 bp [gt-ag] intron
58 GenBank accessions
66387 RNA-seq supporting reads
13707 UHR pooled cells
4113 Brain
6529 Blood
41686 Neuroblastoma
352 Other
(also 6789 Primates bodymap)
70 bp exon
830 bp [gt-ag] intron
60 GenBank accessions
76378 RNA-seq supporting reads
17018 UHR pooled cells
4805 Brain
4530 Blood
49669 Neuroblastoma
356 Other
(also 6965 Primates bodymap)
96 bp exon
127 bp [gt-ag] intron
63 GenBank accessions
74437 RNA-seq supporting reads
16650 UHR pooled cells
4432 Brain
6683 Blood
46352 Neuroblastoma
320 Other
(also 7018 Primates bodymap)
58 bp exon
916 bp [gt-ag] intron
66 GenBank accessions
70151 RNA-seq supporting reads
15923 UHR pooled cells
4270 Brain
4222 Blood
45424 Neuroblastoma
312 Other
(also 5563 Primates bodymap)
73 bp exon
3470 bp [gt-ag] intron
66 GenBank accessions
109758 RNA-seq supporting reads
23239 UHR pooled cells
6539 Brain
6583 Blood
72821 Neuroblastoma
576 Other
(also 7945 Primates bodymap)
193 bp exon
2433 bp [gt-ag] intron
75 GenBank accessions
88857 RNA-seq supporting reads
19562 UHR pooled cells
5679 Brain
4243 Blood
59010 Neuroblastoma
363 Other
(also 8438 Primates bodymap)
122 bp exon
2840 bp [gt-ag] intron
104 GenBank accessions
94791 RNA-seq supporting reads
21445 UHR pooled cells
6003 Brain
4248 Blood
62788 Neuroblastoma
307 Other
(also 7698 Primates bodymap)
134 bp exon
850 bp [gt-ag] intron
119 GenBank accessions
109791 RNA-seq supporting reads
21827 UHR pooled cells
6414 Brain
3219 Blood
78001 Neuroblastoma
330 Other
(also 5246 Primates bodymap)
114 bp exon
3324 bp [gt-ag] intron
118 GenBank accessions
158319 RNA-seq supporting reads
31645 UHR pooled cells
10622 Brain
5919 Blood
109666 Neuroblastoma
467 Other
(also 10310 Primates bodymap)
3442 bp exon
29 accessions, some from lung (seen 5 times)
breast carcinoma (2)
chondrosarcoma (2), placenta (2)
adenocarcinoma, cell line (once)
Validated 3' end, 3 accessions
Validated 3' end, 6 accessions
Validated 3' end, 2 accessions
3442 bp exon
180 bp exon
180 bp exon
3166 bp [gt-ag] intron
307 GenBank accessions
72495 RNA-seq supporting reads
13910 UHR pooled cells
4359 Brain
4231 Blood
49721 Neuroblastoma
274 Other
(also 7373 Primates bodymap)
79 bp exon
2990 bp [gt-ag] intron
310 GenBank accessions
64899 RNA-seq supporting reads
11915 UHR pooled cells
3798 Brain
6810 Blood
42101 Neuroblastoma
275 Other
(also 8301 Primates bodymap)
71 bp exon
1892 bp [gt-ag] intron
310 GenBank accessions
63492 RNA-seq supporting reads
11218 UHR pooled cells
3523 Brain
7524 Blood
40981 Neuroblastoma
246 Other
(also 9615 Primates bodymap)
157 bp exon
2710 bp [gt-ag] intron
22 GenBank accessions
10432 RNA-seq supporting reads
835 UHR pooled cells
578 Brain
115 Blood
8866 Neuroblastoma
38 Other
(also 87 Primates bodymap)
65 bp exon
1079 bp [gt-ag] intron
100 GenBank accessions
57956 RNA-seq supporting reads
11551 UHR pooled cells
3087 Brain
4837 Blood
38210 Neuroblastoma
271 Other
(also 7712 Primates bodymap)
67 bp exon
478 bp [gt-ag] intron
63 GenBank accessions
61686 RNA-seq supporting reads
12569 UHR pooled cells
3346 Brain
6084 Blood
39391 Neuroblastoma
296 Other
(also 8378 Primates bodymap)
141 bp exon
1972 bp [gt-ag] intron
49 GenBank accessions
67666 RNA-seq supporting reads
13910 UHR pooled cells
4074 Brain
6205 Blood
43128 Neuroblastoma
349 Other
(also 8911 Primates bodymap)
96 bp exon
913 bp [gt-ag] intron
39 GenBank accessions
68576 RNA-seq supporting reads
13292 UHR pooled cells
4056 Brain
7890 Blood
42992 Neuroblastoma
346 Other
(also 5144 Primates bodymap)
101 bp exon
201 bp [gt-ag] intron
39 GenBank accessions
73766 RNA-seq supporting reads
14659 UHR pooled cells
4373 Brain
7357 Blood
46995 Neuroblastoma
382 Other
(also 7650 Primates bodymap)
132 bp exon
8468 bp [gt-ag] intron
37 GenBank accessions
72975 RNA-seq supporting reads
14776 UHR pooled cells
4306 Brain
8975 Blood
44566 Neuroblastoma
352 Other
(also 6158 Primates bodymap)
150 bp exon
1466 bp [gt-ag] intron
49 GenBank accessions
85542 RNA-seq supporting reads
17769 UHR pooled cells
5120 Brain
8499 Blood
53756 Neuroblastoma
398 Other
(also 7978 Primates bodymap)
189 bp exon
2180 bp [gt-ag] intron
58 GenBank accessions
66387 RNA-seq supporting reads
13707 UHR pooled cells
4113 Brain
6529 Blood
41686 Neuroblastoma
352 Other
(also 6789 Primates bodymap)
70 bp exon
830 bp [gt-ag] intron
60 GenBank accessions
76378 RNA-seq supporting reads
17018 UHR pooled cells
4805 Brain
4530 Blood
49669 Neuroblastoma
356 Other
(also 6965 Primates bodymap)
96 bp exon
127 bp [gt-ag] intron
63 GenBank accessions
74437 RNA-seq supporting reads
16650 UHR pooled cells
4432 Brain
6683 Blood
46352 Neuroblastoma
320 Other
(also 7018 Primates bodymap)
58 bp exon
916 bp [gt-ag] intron
66 GenBank accessions
70151 RNA-seq supporting reads
15923 UHR pooled cells
4270 Brain
4222 Blood
45424 Neuroblastoma
312 Other
(also 5563 Primates bodymap)
73 bp exon
3470 bp [gt-ag] intron
66 GenBank accessions
109758 RNA-seq supporting reads
23239 UHR pooled cells
6539 Brain
6583 Blood
72821 Neuroblastoma
576 Other
(also 7945 Primates bodymap)
193 bp exon
2433 bp [gt-ag] intron
75 GenBank accessions
88857 RNA-seq supporting reads
19562 UHR pooled cells
5679 Brain
4243 Blood
59010 Neuroblastoma
363 Other
(also 8438 Primates bodymap)
122 bp exon
2840 bp [gt-ag] intron
104 GenBank accessions
94791 RNA-seq supporting reads
21445 UHR pooled cells
6003 Brain
4248 Blood
62788 Neuroblastoma
307 Other
(also 7698 Primates bodymap)
134 bp exon
850 bp [gt-ag] intron
119 GenBank accessions
109791 RNA-seq supporting reads
21827 UHR pooled cells
6414 Brain
3219 Blood
78001 Neuroblastoma
330 Other
(also 5246 Primates bodymap)
114 bp exon
3324 bp [gt-ag] intron
118 GenBank accessions
158319 RNA-seq supporting reads
31645 UHR pooled cells
10622 Brain
5919 Blood
109666 Neuroblastoma
467 Other
(also 10310 Primates bodymap)
160 bp exon
19 accessions, some from brain (seen 6 times)
hippocampus (2), thymus (2)
adrenal gland (once)
amygdala (once)
capped 5' end, 13 accessions
160 bp exon
152 bp exon
152 bp exon
3166 bp [gt-ag] intron
307 GenBank accessions
72495 RNA-seq supporting reads
13910 UHR pooled cells
4359 Brain
4231 Blood
49721 Neuroblastoma
274 Other
(also 7373 Primates bodymap)
79 bp exon
2990 bp [gt-ag] intron
310 GenBank accessions
64899 RNA-seq supporting reads
11915 UHR pooled cells
3798 Brain
6810 Blood
42101 Neuroblastoma
275 Other
(also 8301 Primates bodymap)
71 bp exon
1892 bp [gt-ag] intron
310 GenBank accessions
63492 RNA-seq supporting reads
11218 UHR pooled cells
3523 Brain
7524 Blood
40981 Neuroblastoma
246 Other
(also 9615 Primates bodymap)
157 bp exon
2710 bp [gt-ag] intron
22 GenBank accessions
10432 RNA-seq supporting reads
835 UHR pooled cells
578 Brain
115 Blood
8866 Neuroblastoma
38 Other
(also 87 Primates bodymap)
65 bp exon
1079 bp [gt-ag] intron
100 GenBank accessions
57956 RNA-seq supporting reads
11551 UHR pooled cells
3087 Brain
4837 Blood
38210 Neuroblastoma
271 Other
(also 7712 Primates bodymap)
67 bp exon
478 bp [gt-ag] intron
63 GenBank accessions
61686 RNA-seq supporting reads
12569 UHR pooled cells
3346 Brain
6084 Blood
39391 Neuroblastoma
296 Other
(also 8378 Primates bodymap)
141 bp exon
1972 bp [gt-ag] intron
49 GenBank accessions
67666 RNA-seq supporting reads
13910 UHR pooled cells
4074 Brain
6205 Blood
43128 Neuroblastoma
349 Other
(also 8911 Primates bodymap)
96 bp exon
913 bp [gt-ag] intron
39 GenBank accessions
68576 RNA-seq supporting reads
13292 UHR pooled cells
4056 Brain
7890 Blood
42992 Neuroblastoma
346 Other
(also 5144 Primates bodymap)
101 bp exon
8801 bp [gt-ag] intron
3 GenBank accessions
912 RNA-seq supporting reads
158 UHR pooled cells
18 Brain
209 Blood
519 Neuroblastoma
8 Other
(also 10 Primates bodymap)
150 bp exon
1466 bp [gt-ag] intron
49 GenBank accessions
85542 RNA-seq supporting reads
17769 UHR pooled cells
5120 Brain
8499 Blood
53756 Neuroblastoma
398 Other
(also 7978 Primates bodymap)
189 bp exon
2180 bp [gt-ag] intron
58 GenBank accessions
66387 RNA-seq supporting reads
13707 UHR pooled cells
4113 Brain
6529 Blood
41686 Neuroblastoma
352 Other
(also 6789 Primates bodymap)
70 bp exon
830 bp [gt-ag] intron
60 GenBank accessions
76378 RNA-seq supporting reads
17018 UHR pooled cells
4805 Brain
4530 Blood
49669 Neuroblastoma
356 Other
(also 6965 Primates bodymap)
96 bp exon
127 bp [gt-ag] intron
63 GenBank accessions
74437 RNA-seq supporting reads
16650 UHR pooled cells
4432 Brain
6683 Blood
46352 Neuroblastoma
320 Other
(also 7018 Primates bodymap)
58 bp exon
916 bp [gt-ag] intron
66 GenBank accessions
70151 RNA-seq supporting reads
15923 UHR pooled cells
4270 Brain
4222 Blood
45424 Neuroblastoma
312 Other
(also 5563 Primates bodymap)
73 bp exon
3470 bp [gt-ag] intron
66 GenBank accessions
109758 RNA-seq supporting reads
23239 UHR pooled cells
6539 Brain
6583 Blood
72821 Neuroblastoma
576 Other
(also 7945 Primates bodymap)
193 bp exon
2433 bp [gt-ag] intron
75 GenBank accessions
88857 RNA-seq supporting reads
19562 UHR pooled cells
5679 Brain
4243 Blood
59010 Neuroblastoma
363 Other
(also 8438 Primates bodymap)
122 bp exon
2840 bp [gt-ag] intron
104 GenBank accessions
94791 RNA-seq supporting reads
21445 UHR pooled cells
6003 Brain
4248 Blood
62788 Neuroblastoma
307 Other
(also 7698 Primates bodymap)
134 bp exon
850 bp [gt-ag] intron
119 GenBank accessions
109791 RNA-seq supporting reads
21827 UHR pooled cells
6414 Brain
3219 Blood
78001 Neuroblastoma
330 Other
(also 5246 Primates bodymap)
114 bp exon
3324 bp [gt-ag] intron
118 GenBank accessions
158319 RNA-seq supporting reads
31645 UHR pooled cells
10622 Brain
5919 Blood
109666 Neuroblastoma
467 Other
(also 10310 Primates bodymap)
160 bp exon
5 accessions, some from blastocyst (seen once)
placenta (once), pluripotent cell line derived fromblastocyst inner cell mass (once)
capped 5' end, 2 accessions
160 bp exon
172 bp exon
172 bp exon
3166 bp [gt-ag] intron
307 GenBank accessions
72495 RNA-seq supporting reads
13910 UHR pooled cells
4359 Brain
4231 Blood
49721 Neuroblastoma
274 Other
(also 7373 Primates bodymap)
79 bp exon
2990 bp [gt-ag] intron
310 GenBank accessions
64899 RNA-seq supporting reads
11915 UHR pooled cells
3798 Brain
6810 Blood
42101 Neuroblastoma
275 Other
(also 8301 Primates bodymap)
71 bp exon
1892 bp [gt-ag] intron
310 GenBank accessions
63492 RNA-seq supporting reads
11218 UHR pooled cells
3523 Brain
7524 Blood
40981 Neuroblastoma
246 Other
(also 9615 Primates bodymap)
157 bp exon
4399 bp [gt-ag] intron
9 GenBank accessions
379 RNA-seq supporting reads
76 UHR pooled cells
115 Brain
3 Blood
184 Neuroblastoma
1 Other
(also 45 Primates bodymap)
141 bp exon
1972 bp [gt-ag] intron
49 GenBank accessions
67666 RNA-seq supporting reads
13910 UHR pooled cells
4074 Brain
6205 Blood
43128 Neuroblastoma
349 Other
(also 8911 Primates bodymap)
96 bp exon
913 bp [gt-ag] intron
39 GenBank accessions
68576 RNA-seq supporting reads
13292 UHR pooled cells
4056 Brain
7890 Blood
42992 Neuroblastoma
346 Other
(also 5144 Primates bodymap)
101 bp exon
201 bp [gt-ag] intron
39 GenBank accessions
73766 RNA-seq supporting reads
14659 UHR pooled cells
4373 Brain
7357 Blood
46995 Neuroblastoma
382 Other
(also 7650 Primates bodymap)
132 bp exon
8468 bp [gt-ag] intron
37 GenBank accessions
72975 RNA-seq supporting reads
14776 UHR pooled cells
4306 Brain
8975 Blood
44566 Neuroblastoma
352 Other
(also 6158 Primates bodymap)
150 bp exon
1466 bp [gt-ag] intron
49 GenBank accessions
85542 RNA-seq supporting reads
17769 UHR pooled cells
5120 Brain
8499 Blood
53756 Neuroblastoma
398 Other
(also 7978 Primates bodymap)
189 bp exon
2180 bp [gt-ag] intron
58 GenBank accessions
66387 RNA-seq supporting reads
13707 UHR pooled cells
4113 Brain
6529 Blood
41686 Neuroblastoma
352 Other
(also 6789 Primates bodymap)
70 bp exon
830 bp [gt-ag] intron
60 GenBank accessions
76378 RNA-seq supporting reads
17018 UHR pooled cells
4805 Brain
4530 Blood
49669 Neuroblastoma
356 Other
(also 6965 Primates bodymap)
96 bp exon
127 bp [gt-ag] intron
63 GenBank accessions
74437 RNA-seq supporting reads
16650 UHR pooled cells
4432 Brain
6683 Blood
46352 Neuroblastoma
320 Other
(also 7018 Primates bodymap)
58 bp exon
916 bp [gt-ag] intron
66 GenBank accessions
70151 RNA-seq supporting reads
15923 UHR pooled cells
4270 Brain
4222 Blood
45424 Neuroblastoma
312 Other
(also 5563 Primates bodymap)
73 bp exon
3470 bp [gt-ag] intron
66 GenBank accessions
109758 RNA-seq supporting reads
23239 UHR pooled cells
6539 Brain
6583 Blood
72821 Neuroblastoma
576 Other
(also 7945 Primates bodymap)
193 bp exon
2433 bp [gt-ag] intron
75 GenBank accessions
88857 RNA-seq supporting reads
19562 UHR pooled cells
5679 Brain
4243 Blood
59010 Neuroblastoma
363 Other
(also 8438 Primates bodymap)
122 bp exon
2840 bp [gt-ag] intron
104 GenBank accessions
94791 RNA-seq supporting reads
21445 UHR pooled cells
6003 Brain
4248 Blood
62788 Neuroblastoma
307 Other
(also 7698 Primates bodymap)
134 bp exon
850 bp [gt-ag] intron
119 GenBank accessions
109791 RNA-seq supporting reads
21827 UHR pooled cells
6414 Brain
3219 Blood
78001 Neuroblastoma
330 Other
(also 5246 Primates bodymap)
114 bp exon
3324 bp [gt-ag] intron
118 GenBank accessions
158319 RNA-seq supporting reads
31645 UHR pooled cells
10622 Brain
5919 Blood
109666 Neuroblastoma
467 Other
(also 10310 Primates bodymap)
239 bp exon
67 accessions, some from lung (seen 7 times)
uterus (7), eye (5), fetal eyes
lens, eye anterior segment
optic nerve, retina, retina foveal and macular
RPE andchoroid (5), skin (5)
capped 5' end, 5 accessions
Validated 3' end, 2 accessions
Validated 3' end, 5 accessions
Validated 3' end, 3 accessions
239 bp exon
175 bp exon
175 bp exon
3166 bp [gt-ag] intron
307 GenBank accessions
72495 RNA-seq supporting reads
13910 UHR pooled cells
4359 Brain
4231 Blood
49721 Neuroblastoma
274 Other
(also 7373 Primates bodymap)
79 bp exon
2990 bp [gt-ag] intron
310 GenBank accessions
64899 RNA-seq supporting reads
11915 UHR pooled cells
3798 Brain
6810 Blood
42101 Neuroblastoma
275 Other
(also 8301 Primates bodymap)
71 bp exon
1892 bp [gt-ag] intron
310 GenBank accessions
63492 RNA-seq supporting reads
11218 UHR pooled cells
3523 Brain
7524 Blood
40981 Neuroblastoma
246 Other
(also 9615 Primates bodymap)
157 bp exon
368 bp [gt-ag] intron
271 GenBank accessions
48246 RNA-seq supporting reads
10566 UHR pooled cells
2546 Brain
5939 Blood
28970 Neuroblastoma
225 Other
(also 5805 Primates bodymap)
78 bp exon
2264 bp [gt-ag] intron
185 GenBank accessions
43234 RNA-seq supporting reads
10469 UHR pooled cells
2395 Brain
2632 Blood
27531 Neuroblastoma
207 Other
(also 6519 Primates bodymap)
65 bp exon
1079 bp [gt-ag] intron
100 GenBank accessions
57956 RNA-seq supporting reads
11551 UHR pooled cells
3087 Brain
4837 Blood
38210 Neuroblastoma
271 Other
(also 7712 Primates bodymap)
67 bp exon
478 bp [gt-ag] intron
63 GenBank accessions
61686 RNA-seq supporting reads
12569 UHR pooled cells
3346 Brain
6084 Blood
39391 Neuroblastoma
296 Other
(also 8378 Primates bodymap)
141 bp exon
1972 bp [gt-ag] intron
49 GenBank accessions
67666 RNA-seq supporting reads
13910 UHR pooled cells
4074 Brain
6205 Blood
43128 Neuroblastoma
349 Other
(also 8911 Primates bodymap)
96 bp exon
913 bp [gt-ag] intron
39 GenBank accessions
68576 RNA-seq supporting reads
13292 UHR pooled cells
4056 Brain
7890 Blood
42992 Neuroblastoma
346 Other
(also 5144 Primates bodymap)
101 bp exon
201 bp [gt-ag] intron
39 GenBank accessions
73766 RNA-seq supporting reads
14659 UHR pooled cells
4373 Brain
7357 Blood
46995 Neuroblastoma
382 Other
(also 7650 Primates bodymap)
132 bp exon
8468 bp [gt-ag] intron
37 GenBank accessions
72975 RNA-seq supporting reads
14776 UHR pooled cells
4306 Brain
8975 Blood
44566 Neuroblastoma
352 Other
(also 6158 Primates bodymap)
150 bp exon
1466 bp [gt-ag] intron
49 GenBank accessions
85542 RNA-seq supporting reads
17769 UHR pooled cells
5120 Brain
8499 Blood
53756 Neuroblastoma
398 Other
(also 7978 Primates bodymap)
189 bp exon
2180 bp [gt-ag] intron
58 GenBank accessions
66387 RNA-seq supporting reads
13707 UHR pooled cells
4113 Brain
6529 Blood
41686 Neuroblastoma
352 Other
(also 6789 Primates bodymap)
70 bp exon
830 bp [gt-ag] intron
60 GenBank accessions
76378 RNA-seq supporting reads
17018 UHR pooled cells
4805 Brain
4530 Blood
49669 Neuroblastoma
356 Other
(also 6965 Primates bodymap)
96 bp exon
127 bp [gt-ag] intron
63 GenBank accessions
74437 RNA-seq supporting reads
16650 UHR pooled cells
4432 Brain
6683 Blood
46352 Neuroblastoma
320 Other
(also 7018 Primates bodymap)
58 bp exon
916 bp [gt-ag] intron
66 GenBank accessions
70151 RNA-seq supporting reads
15923 UHR pooled cells
4270 Brain
4222 Blood
45424 Neuroblastoma
312 Other
(also 5563 Primates bodymap)
73 bp exon
3470 bp [gt-ag] intron
66 GenBank accessions
109758 RNA-seq supporting reads
23239 UHR pooled cells
6539 Brain
6583 Blood
72821 Neuroblastoma
576 Other
(also 7945 Primates bodymap)
193 bp exon
2485 bp [gt-ag] intron
4 GenBank accessions
1555 RNA-seq supporting reads
320 UHR pooled cells
85 Brain
39 Blood
1106 Neuroblastoma
5 Other
(also 13 Primates bodymap)
70 bp exon
2840 bp [gt-ag] intron
104 GenBank accessions
94791 RNA-seq supporting reads
21445 UHR pooled cells
6003 Brain
4248 Blood
62788 Neuroblastoma
307 Other
(also 7698 Primates bodymap)
134 bp exon
134 bp exon
850 bp [gt-ag] intron
119 GenBank accessions
109791 RNA-seq supporting reads
21827 UHR pooled cells
6414 Brain
3219 Blood
78001 Neuroblastoma
330 Other
(also 5246 Primates bodymap)
114 bp exon
3324 bp [gt-ag] intron
118 GenBank accessions
158319 RNA-seq supporting reads
31645 UHR pooled cells
10622 Brain
5919 Blood
109666 Neuroblastoma
467 Other
(also 10310 Primates bodymap)
198 accessions, some from brain (seen 14 times)
placenta (14), uterus (13)
breast, tumor tissue (10)
breast (8)
capped 5' end, 34 accessions
Validated 3' end, 10 accessions
Validated 3' end, 8 accessions
237 bp exon
191 bp exon
191 bp exon
156 bp uORF
6235 bp [gt-ag] intron
4 GenBank accessions
757 RNA-seq supporting reads
128 UHR pooled cells
34 Brain
30 Blood
561 Neuroblastoma
4 Other
(also 12 Primates bodymap)
156 bp uORF
71 bp exon
71 bp exon
1892 bp [gt-ag] intron
310 GenBank accessions
63492 RNA-seq supporting reads
11218 UHR pooled cells
3523 Brain
7524 Blood
40981 Neuroblastoma
246 Other
(also 9615 Primates bodymap)
157 bp exon
157 bp exon
368 bp [gt-ag] intron
271 GenBank accessions
48246 RNA-seq supporting reads
10566 UHR pooled cells
2546 Brain
5939 Blood
28970 Neuroblastoma
225 Other
(also 5805 Primates bodymap)
78 bp exon
78 bp exon
78 bp exon
2264 bp [gt-ag] intron
185 GenBank accessions
43234 RNA-seq supporting reads
10469 UHR pooled cells
2395 Brain
2632 Blood
27531 Neuroblastoma
207 Other
(also 6519 Primates bodymap)
65 bp exon
65 bp exon
1079 bp [gt-ag] intron
100 GenBank accessions
57956 RNA-seq supporting reads
11551 UHR pooled cells
3087 Brain
4837 Blood
38210 Neuroblastoma
271 Other
(also 7712 Primates bodymap)
67 bp exon
67 bp exon
478 bp [gt-ag] intron
63 GenBank accessions
61686 RNA-seq supporting reads
12569 UHR pooled cells
3346 Brain
6084 Blood
39391 Neuroblastoma
296 Other
(also 8378 Primates bodymap)
141 bp exon
141 bp exon
1972 bp [gt-ag] intron
49 GenBank accessions
67666 RNA-seq supporting reads
13910 UHR pooled cells
4074 Brain
6205 Blood
43128 Neuroblastoma
349 Other
(also 8911 Primates bodymap)
96 bp exon
96 bp exon
913 bp [gt-ag] intron
39 GenBank accessions
68576 RNA-seq supporting reads
13292 UHR pooled cells
4056 Brain
7890 Blood
42992 Neuroblastoma
346 Other
(also 5144 Primates bodymap)
101 bp exon
101 bp exon
201 bp [gt-ag] intron
39 GenBank accessions
73766 RNA-seq supporting reads
14659 UHR pooled cells
4373 Brain
7357 Blood
46995 Neuroblastoma
382 Other
(also 7650 Primates bodymap)
132 bp exon
132 bp exon
8468 bp [gt-ag] intron
37 GenBank accessions
72975 RNA-seq supporting reads
14776 UHR pooled cells
4306 Brain
8975 Blood
44566 Neuroblastoma
352 Other
(also 6158 Primates bodymap)
150 bp exon
150 bp exon
1466 bp [gt-ag] intron
49 GenBank accessions
85542 RNA-seq supporting reads
17769 UHR pooled cells
5120 Brain
8499 Blood
53756 Neuroblastoma
398 Other
(also 7978 Primates bodymap)
189 bp exon
189 bp exon
2180 bp [gt-ag] intron
58 GenBank accessions
66387 RNA-seq supporting reads
13707 UHR pooled cells
4113 Brain
6529 Blood
41686 Neuroblastoma
352 Other
(also 6789 Primates bodymap)
70 bp exon
70 bp exon
830 bp [gt-ag] intron
60 GenBank accessions
76378 RNA-seq supporting reads
17018 UHR pooled cells
4805 Brain
4530 Blood
49669 Neuroblastoma
356 Other
(also 6965 Primates bodymap)
96 bp exon
96 bp exon
127 bp [gt-ag] intron
63 GenBank accessions
74437 RNA-seq supporting reads
16650 UHR pooled cells
4432 Brain
6683 Blood
46352 Neuroblastoma
320 Other
(also 7018 Primates bodymap)
58 bp exon
58 bp exon
916 bp [gt-ag] intron
66 GenBank accessions
70151 RNA-seq supporting reads
15923 UHR pooled cells
4270 Brain
4222 Blood
45424 Neuroblastoma
312 Other
(also 5563 Primates bodymap)
73 bp exon
73 bp exon
3470 bp [gt-ag] intron
66 GenBank accessions
109758 RNA-seq supporting reads
23239 UHR pooled cells
6539 Brain
6583 Blood
72821 Neuroblastoma
576 Other
(also 7945 Primates bodymap)
193 bp exon
193 bp exon
2485 bp [gt-ag] intron
4 GenBank accessions
1555 RNA-seq supporting reads
320 UHR pooled cells
85 Brain
39 Blood
1106 Neuroblastoma
5 Other
(also 13 Primates bodymap)
70 bp exon
70 bp exon
2840 bp [gt-ag] intron
104 GenBank accessions
94791 RNA-seq supporting reads
21445 UHR pooled cells
6003 Brain
4248 Blood
62788 Neuroblastoma
307 Other
(also 7698 Primates bodymap)
134 bp exon
134 bp exon
134 bp exon
850 bp [gt-ag] intron
119 GenBank accessions
109791 RNA-seq supporting reads
21827 UHR pooled cells
6414 Brain
3219 Blood
78001 Neuroblastoma
330 Other
(also 5246 Primates bodymap)
114 bp exon
3324 bp [gt-ag] intron
118 GenBank accessions
158319 RNA-seq supporting reads
31645 UHR pooled cells
10622 Brain
5919 Blood
109666 Neuroblastoma
467 Other
(also 10310 Primates bodymap)
3 accessions, some from thymus (seen 2 times)
testis (once)
capped 5' end, 3 accessions
232 bp exon
176 bp exon
176 bp exon
6235 bp [gt-ag] intron
4 GenBank accessions
757 RNA-seq supporting reads
128 UHR pooled cells
34 Brain
30 Blood
561 Neuroblastoma
4 Other
(also 12 Primates bodymap)
71 bp exon
71 bp exon
1892 bp [gt-ag] intron
310 GenBank accessions
63492 RNA-seq supporting reads
11218 UHR pooled cells
3523 Brain
7524 Blood
40981 Neuroblastoma
246 Other
(also 9615 Primates bodymap)
157 bp exon
2710 bp [gt-ag] intron
22 GenBank accessions
10432 RNA-seq supporting reads
835 UHR pooled cells
578 Brain
115 Blood
8866 Neuroblastoma
38 Other
(also 87 Primates bodymap)
65 bp exon
1079 bp [gt-ag] intron
100 GenBank accessions
57956 RNA-seq supporting reads
11551 UHR pooled cells
3087 Brain
4837 Blood
38210 Neuroblastoma
271 Other
(also 7712 Primates bodymap)
1 accession from amygdala
capped 5' end, 1 accession
67 bp exon
96 bp exon
96 bp exon
78 bp uORF
96 bp exon
2180 bp [gt-ag] intron
58 GenBank accessions
66387 RNA-seq supporting reads
13707 UHR pooled cells
4113 Brain
6529 Blood
41686 Neuroblastoma
352 Other
(also 6789 Primates bodymap)
70 bp exon
70 bp exon
830 bp [gt-ag] intron
60 GenBank accessions
76378 RNA-seq supporting reads
17018 UHR pooled cells
4805 Brain
4530 Blood
49669 Neuroblastoma
356 Other
(also 6965 Primates bodymap)
96 bp exon
96 bp exon
127 bp [gt-ag] intron
63 GenBank accessions
74437 RNA-seq supporting reads
16650 UHR pooled cells
4432 Brain
6683 Blood
46352 Neuroblastoma
320 Other
(also 7018 Primates bodymap)
58 bp exon
58 bp exon
916 bp [gt-ag] intron
66 GenBank accessions
70151 RNA-seq supporting reads
15923 UHR pooled cells
4270 Brain
4222 Blood
45424 Neuroblastoma
312 Other
(also 5563 Primates bodymap)
73 bp exon
73 bp exon
3470 bp [gt-ag] intron
66 GenBank accessions
109758 RNA-seq supporting reads
23239 UHR pooled cells
6539 Brain
6583 Blood
72821 Neuroblastoma
576 Other
(also 7945 Primates bodymap)
193 bp exon
193 bp exon
193 bp exon
2433 bp [gt-ag] intron
75 GenBank accessions
88857 RNA-seq supporting reads
19562 UHR pooled cells
5679 Brain
4243 Blood
59010 Neuroblastoma
363 Other
(also 8438 Primates bodymap)
122 bp exon
122 bp exon
2840 bp [gt-ag] intron
104 GenBank accessions
94791 RNA-seq supporting reads
21445 UHR pooled cells
6003 Brain
4248 Blood
62788 Neuroblastoma
307 Other
(also 7698 Primates bodymap)
134 bp exon
134 bp exon
850 bp [gt-ag] intron
119 GenBank accessions
109791 RNA-seq supporting reads
21827 UHR pooled cells
6414 Brain
3219 Blood
78001 Neuroblastoma
330 Other
(also 5246 Primates bodymap)
114 bp exon
114 bp exon
3324 bp [gt-ag] intron
118 GenBank accessions
158319 RNA-seq supporting reads
31645 UHR pooled cells
10622 Brain
5919 Blood
109666 Neuroblastoma
467 Other
(also 10310 Primates bodymap)
1577 bp exon
1577 bp exon
1 accession
capped 5' end, 1 accession
1577 bp exon
178 bp exon
178 bp exon
3166 bp [gt-ag] intron
307 GenBank accessions
72495 RNA-seq supporting reads
13910 UHR pooled cells
4359 Brain
4231 Blood
49721 Neuroblastoma
274 Other
(also 7373 Primates bodymap)
79 bp exon
2990 bp [gt-ag] intron
310 GenBank accessions
64899 RNA-seq supporting reads
11915 UHR pooled cells
3798 Brain
6810 Blood
42101 Neuroblastoma
275 Other
(also 8301 Primates bodymap)
326 bp exon
2 accessions, some from cerebellum (seen once)
cerebrum (once)
capped 5' end, 1 accession
326 bp exon
49 bp exon
858 bp [gt-ag] intron
1 GenBank accession
67 bp exon
478 bp [gt-ag] intron
63 GenBank accessions
61686 RNA-seq supporting reads
12569 UHR pooled cells
3346 Brain
6084 Blood
39391 Neuroblastoma
296 Other
(also 8378 Primates bodymap)
141 bp exon
1972 bp [gt-ag] intron
49 GenBank accessions
67666 RNA-seq supporting reads
13910 UHR pooled cells
4074 Brain
6205 Blood
43128 Neuroblastoma
349 Other
(also 8911 Primates bodymap)
96 bp exon
913 bp [gt-ag] intron
39 GenBank accessions
68576 RNA-seq supporting reads
13292 UHR pooled cells
4056 Brain
7890 Blood
42992 Neuroblastoma
346 Other
(also 5144 Primates bodymap)
101 bp exon
101 bp exon
201 bp [gt-ag] intron
39 GenBank accessions
73766 RNA-seq supporting reads
14659 UHR pooled cells
4373 Brain
7357 Blood
46995 Neuroblastoma
382 Other
(also 7650 Primates bodymap)
127 bp exon
1 accession from testis
capped 5' end, 1 accession
127 bp exon
111 bp exon
111 bp exon
156 bp uORF
111 bp exon
220 bp [gt-ag] intron
1 GenBank accession
4 RNA-seq supporting reads
2 UHR pooled cells
1 Blood
1 Neuroblastoma
(also 1 Primates bodymap)
70 bp exon
156 bp uORF
830 bp [gt-ag] intron
60 GenBank accessions
76378 RNA-seq supporting reads
17018 UHR pooled cells
4805 Brain
4530 Blood
49669 Neuroblastoma
356 Other
(also 6965 Primates bodymap)
156 bp uORF
96 bp exon
96 bp exon
127 bp [gt-ag] intron
63 GenBank accessions
74437 RNA-seq supporting reads
16650 UHR pooled cells
4432 Brain
6683 Blood
46352 Neuroblastoma
320 Other
(also 7018 Primates bodymap)
58 bp exon
58 bp exon
916 bp [gt-ag] intron
66 GenBank accessions
70151 RNA-seq supporting reads
15923 UHR pooled cells
4270 Brain
4222 Blood
45424 Neuroblastoma
312 Other
(also 5563 Primates bodymap)
73 bp exon
73 bp exon
3470 bp [gt-ag] intron
66 GenBank accessions
109758 RNA-seq supporting reads
23239 UHR pooled cells
6539 Brain
6583 Blood
72821 Neuroblastoma
576 Other
(also 7945 Primates bodymap)
815 bp exon
815 bp exon
21 accessions, some from breast carcinoma (seen 7 times)
eye (2), 2 pooled tumors (clear cell type) (once)
fetal eye (once), fetal eyes
lens, eye anterior segment
optic nerve, retina, retina foveal and macular
RPE andchoroid (once)
capped 5' end, 1 accession
815 bp exon
196 bp exon
196 bp exon
42 bp uORF
196 bp exon
196 bp exon
850 bp [gt-ag] intron
119 GenBank accessions
109791 RNA-seq supporting reads
21827 UHR pooled cells
6414 Brain
3219 Blood
78001 Neuroblastoma
330 Other
(also 5246 Primates bodymap)
114 bp exon
114 bp exon
3324 bp [gt-ag] intron
118 GenBank accessions
158319 RNA-seq supporting reads
31645 UHR pooled cells
10622 Brain
5919 Blood
109666 Neuroblastoma
467 Other
(also 10310 Primates bodymap)
261 bp exon
261 bp exon
1 accession from brain
capped 5' end, 1 accession
261 bp exon
53 bp exon
3740 bp [gt-ag] intron
1 GenBank accession
11 RNA-seq supporting reads
9 UHR pooled cells
2 Neuroblastoma
79 bp exon
2990 bp [gt-ag] intron
310 GenBank accessions
64899 RNA-seq supporting reads
11915 UHR pooled cells
3798 Brain
6810 Blood
42101 Neuroblastoma
275 Other
(also 8301 Primates bodymap)
71 bp exon
1892 bp [gt-ag] intron
310 GenBank accessions
63492 RNA-seq supporting reads
11218 UHR pooled cells
3523 Brain
7524 Blood
40981 Neuroblastoma
246 Other
(also 9615 Primates bodymap)
157 bp exon
368 bp [gt-ag] intron
271 GenBank accessions
48246 RNA-seq supporting reads
10566 UHR pooled cells
2546 Brain
5939 Blood
28970 Neuroblastoma
225 Other
(also 5805 Primates bodymap)
78 bp exon
78 bp exon
2264 bp [gt-ag] intron
185 GenBank accessions
43234 RNA-seq supporting reads
10469 UHR pooled cells
2395 Brain
2632 Blood
27531 Neuroblastoma
207 Other
(also 6519 Primates bodymap)
65 bp exon
1079 bp [gt-ag] intron
100 GenBank accessions
57956 RNA-seq supporting reads
11551 UHR pooled cells
3087 Brain
4837 Blood
38210 Neuroblastoma
271 Other
(also 7712 Primates bodymap)
31 bp exon
1 accession from testis
capped 5' end, 1 accession
31 bp exon
69 bp exon
1466 bp [gt-ag] intron
49 GenBank accessions
85542 RNA-seq supporting reads
17769 UHR pooled cells
5120 Brain
8499 Blood
53756 Neuroblastoma
398 Other
(also 7978 Primates bodymap)
189 bp exon
2180 bp [gt-ag] intron
58 GenBank accessions
66387 RNA-seq supporting reads
13707 UHR pooled cells
4113 Brain
6529 Blood
41686 Neuroblastoma
352 Other
(also 6789 Primates bodymap)
70 bp exon
830 bp [gt-ag] intron
60 GenBank accessions
76378 RNA-seq supporting reads
17018 UHR pooled cells
4805 Brain
4530 Blood
49669 Neuroblastoma
356 Other
(also 6965 Primates bodymap)
96 bp exon
1101 bp [gt-ag] intron
1 GenBank accession
631 RNA-seq supporting reads
97 UHR pooled cells
154 Brain
4 Blood
373 Neuroblastoma
3 Other
(also 21 Primates bodymap)
73 bp exon
3470 bp [gt-ag] intron
66 GenBank accessions
109758 RNA-seq supporting reads
23239 UHR pooled cells
6539 Brain
6583 Blood
72821 Neuroblastoma
576 Other
(also 7945 Primates bodymap)
193 bp exon
1 accession from leiomyosarcoma from uterus
193 bp exon
1024 bp exon
1024 bp exon
3 accessions, some from bladder tumor (seen once)
testis (once)
1024 bp exon
1978 bp exon
1978 bp exon
29 accessions, some from liver and spleen (seen 4 times)
lung (3), primary lung epithelial cells (3)
hypothalamus (2), ovary (2)
capped 5' end, 1 accession
Validated 3' end, 7 accessions
1978 bp exon
169 bp exon
169 bp exon
3166 bp [gt-ag] intron
307 GenBank accessions
72495 RNA-seq supporting reads
13910 UHR pooled cells
4359 Brain
4231 Blood
49721 Neuroblastoma
274 Other
(also 7373 Primates bodymap)
79 bp exon
2990 bp [gt-ag] intron
310 GenBank accessions
64899 RNA-seq supporting reads
11915 UHR pooled cells
3798 Brain
6810 Blood
42101 Neuroblastoma
275 Other
(also 8301 Primates bodymap)
71 bp exon
1892 bp [gt-ag] intron
310 GenBank accessions
63492 RNA-seq supporting reads
11218 UHR pooled cells
3523 Brain
7524 Blood
40981 Neuroblastoma
246 Other
(also 9615 Primates bodymap)
372 bp exon
2 accessions, some from embryonic stem cells
dmso-treated H9 cellline (seen once)
uterus (once)
capped 5' end, 1 accession
372 bp exon
1169 bp exon
1169 bp exon
6 accessions, some from placenta (seen 3 times)
breast carcinoma (once)
cornea (once), eye (once)
pancreatic islet (once)
Validated 3' end, 1 accession
1169 bp exon
282 bp exon
282 bp exon
282 bp exon
3324 bp [gt-ag] intron
118 GenBank accessions
158319 RNA-seq supporting reads
31645 UHR pooled cells
10622 Brain
5919 Blood
109666 Neuroblastoma
467 Other
(also 10310 Primates bodymap)
1 accession from prostate normal
132 bp exon
59 bp exon
1034 bp [gt-ag] intron
2 GenBank accessions
157 bp exon
157 bp exon
72 bp uORF
157 bp exon
368 bp [gt-ag] intron
271 GenBank accessions
48246 RNA-seq supporting reads
10566 UHR pooled cells
2546 Brain
5939 Blood
28970 Neuroblastoma
225 Other
(also 5805 Primates bodymap)
78 bp exon
78 bp exon
78 bp exon
2264 bp [gt-ag] intron
185 GenBank accessions
43234 RNA-seq supporting reads
10469 UHR pooled cells
2395 Brain
2632 Blood
27531 Neuroblastoma
207 Other
(also 6519 Primates bodymap)
65 bp exon
65 bp exon
1079 bp [gt-ag] intron
100 GenBank accessions
57956 RNA-seq supporting reads
11551 UHR pooled cells
3087 Brain
4837 Blood
38210 Neuroblastoma
271 Other
(also 7712 Primates bodymap)
67 bp exon
67 bp exon
478 bp [gt-ag] intron
63 GenBank accessions
61686 RNA-seq supporting reads
12569 UHR pooled cells
3346 Brain
6084 Blood
39391 Neuroblastoma
296 Other
(also 8378 Primates bodymap)
122 bp exon
1 accession from testis
122 bp exon
263 bp exon
263 bp exon
66 bp uORF
263 bp exon
263 bp exon
2840 bp [gt-ag] intron
104 GenBank accessions
94791 RNA-seq supporting reads
21445 UHR pooled cells
6003 Brain
4248 Blood
62788 Neuroblastoma
307 Other
(also 7698 Primates bodymap)
134 bp exon
134 bp exon
850 bp [gt-ag] intron
119 GenBank accessions
109791 RNA-seq supporting reads
21827 UHR pooled cells
6414 Brain
3219 Blood
78001 Neuroblastoma
330 Other
(also 5246 Primates bodymap)
114 bp exon
114 bp exon
3324 bp [gt-ag] intron
118 GenBank accessions
158319 RNA-seq supporting reads
31645 UHR pooled cells
10622 Brain
5919 Blood
109666 Neuroblastoma
467 Other
(also 10310 Primates bodymap)
160 bp exon
160 bp exon
1 accession from eye from fetal eyes
lens, eye anterior segment
optic nerve, retina, retina foveal and macular
RPE andchoroid
160 bp exon
155 bp exon
155 bp exon
3166 bp [gt-ag] intron
307 GenBank accessions
72495 RNA-seq supporting reads
13910 UHR pooled cells
4359 Brain
4231 Blood
49721 Neuroblastoma
274 Other
(also 7373 Primates bodymap)
79 bp exon
2990 bp [gt-ag] intron
310 GenBank accessions
64899 RNA-seq supporting reads
11915 UHR pooled cells
3798 Brain
6810 Blood
42101 Neuroblastoma
275 Other
(also 8301 Primates bodymap)
71 bp exon
1917 bp [gt-ag] intron
1 GenBank accession
17 RNA-seq supporting reads
7 UHR pooled cells
2 Brain
1 Blood
7 Neuroblastoma
132 bp exon
132 bp exon
368 bp [gt-ag] intron
271 GenBank accessions
48246 RNA-seq supporting reads
10566 UHR pooled cells
2546 Brain
5939 Blood
28970 Neuroblastoma
225 Other
(also 5805 Primates bodymap)
78 bp exon
2264 bp [gt-ag] intron
185 GenBank accessions
43234 RNA-seq supporting reads
10469 UHR pooled cells
2395 Brain
2632 Blood
27531 Neuroblastoma
207 Other
(also 6519 Primates bodymap)
65 bp exon
1079 bp [gt-ag] intron
100 GenBank accessions
57956 RNA-seq supporting reads
11551 UHR pooled cells
3087 Brain
4837 Blood
38210 Neuroblastoma
271 Other
(also 7712 Primates bodymap)
67 bp exon
478 bp [gt-ag] intron
63 GenBank accessions
61686 RNA-seq supporting reads
12569 UHR pooled cells
3346 Brain
6084 Blood
39391 Neuroblastoma
296 Other
(also 8378 Primates bodymap)
1 accession from adrenal cortex carcinoma
cell line from adrenal gland
7 bp exon
159 bp exon
159 bp exon
198 bp uORF
108 bp [gt-ag] intron
4 GenBank accessions
6 RNA-seq supporting reads
2 UHR pooled cells
4 Neuroblastoma
67 bp exon
198 bp uORF
67 bp exon
2840 bp [gt-ag] intron
104 GenBank accessions
94791 RNA-seq supporting reads
21445 UHR pooled cells
6003 Brain
4248 Blood
62788 Neuroblastoma
307 Other
(also 7698 Primates bodymap)
198 bp uORF
134 bp exon
134 bp exon
850 bp [gt-ag] intron
119 GenBank accessions
109791 RNA-seq supporting reads
21827 UHR pooled cells
6414 Brain
3219 Blood
78001 Neuroblastoma
330 Other
(also 5246 Primates bodymap)
114 bp exon
114 bp exon
3324 bp [gt-ag] intron
118 GenBank accessions
158319 RNA-seq supporting reads
31645 UHR pooled cells
10622 Brain
5919 Blood
109666 Neuroblastoma
467 Other
(also 10310 Primates bodymap)
164 bp exon
164 bp exon
4 accessions, some from placenta (seen 2 times)
Validated 3' end, 4 accessions
164 bp exon
172 bp exon
172 bp exon
201 bp uORF
172 bp exon
3171 bp [gt-ag] intron
1 GenBank accession
331 RNA-seq supporting reads
54 UHR pooled cells
30 Brain
4 Blood
241 Neuroblastoma
2 Other
(also 5 Primates bodymap)
201 bp uORF
74 bp exon
74 bp exon
2990 bp [gt-ag] intron
310 GenBank accessions
64899 RNA-seq supporting reads
11915 UHR pooled cells
3798 Brain
6810 Blood
42101 Neuroblastoma
275 Other
(also 8301 Primates bodymap)
71 bp exon
71 bp exon
1892 bp [gt-ag] intron
310 GenBank accessions
63492 RNA-seq supporting reads
11218 UHR pooled cells
3523 Brain
7524 Blood
40981 Neuroblastoma
246 Other
(also 9615 Primates bodymap)
157 bp exon
157 bp exon
368 bp [gt-ag] intron
271 GenBank accessions
48246 RNA-seq supporting reads
10566 UHR pooled cells
2546 Brain
5939 Blood
28970 Neuroblastoma
225 Other
(also 5805 Primates bodymap)
78 bp exon
78 bp exon
2264 bp [gt-ag] intron
185 GenBank accessions
43234 RNA-seq supporting reads
10469 UHR pooled cells
2395 Brain
2632 Blood
27531 Neuroblastoma
207 Other
(also 6519 Primates bodymap)
34 bp exon
34 bp exon
1 accession from thymus
capped 5' end, 1 accession
34 bp exon
73 bp exon
127 bp [gt-ag] intron
63 GenBank accessions
74437 RNA-seq supporting reads
16650 UHR pooled cells
4432 Brain
6683 Blood
46352 Neuroblastoma
320 Other
(also 7018 Primates bodymap)
58 bp exon
7085 bp [gt-ag] intron
1 GenBank accession
50 RNA-seq supporting reads
7 UHR pooled cells
2 Brain
41 Neuroblastoma
122 bp exon
122 bp exon
2840 bp [gt-ag] intron
104 GenBank accessions
94791 RNA-seq supporting reads
21445 UHR pooled cells
6003 Brain
4248 Blood
62788 Neuroblastoma
307 Other
(also 7698 Primates bodymap)
134 bp exon
850 bp [gt-ag] intron
119 GenBank accessions
109791 RNA-seq supporting reads
21827 UHR pooled cells
6414 Brain
3219 Blood
78001 Neuroblastoma
330 Other
(also 5246 Primates bodymap)
114 bp exon
3324 bp [gt-ag] intron
118 GenBank accessions
158319 RNA-seq supporting reads
31645 UHR pooled cells
10622 Brain
5919 Blood
109666 Neuroblastoma
467 Other
(also 10310 Primates bodymap)
3443 bp exon
25 accessions, some from lung (seen 6 times)
brain (3), eye (3), placenta (2)
retinoblastoma (2)
Validated 3' end, 1 accession
Validated 3' end, 1 accession
3443 bp exon
331 bp exon
331 bp exon
45 bp uORF
331 bp exon
331 bp exon
368 bp [gt-ag] intron
271 GenBank accessions
48246 RNA-seq supporting reads
10566 UHR pooled cells
2546 Brain
5939 Blood
28970 Neuroblastoma
225 Other
(also 5805 Primates bodymap)
78 bp exon
78 bp exon
2264 bp [gt-ag] intron
185 GenBank accessions
43234 RNA-seq supporting reads
10469 UHR pooled cells
2395 Brain
2632 Blood
27531 Neuroblastoma
207 Other
(also 6519 Primates bodymap)
65 bp exon
65 bp exon
1079 bp [gt-ag] intron
100 GenBank accessions
57956 RNA-seq supporting reads
11551 UHR pooled cells
3087 Brain
4837 Blood
38210 Neuroblastoma
271 Other
(also 7712 Primates bodymap)
67 bp exon
67 bp exon
478 bp [gt-ag] intron
63 GenBank accessions
61686 RNA-seq supporting reads
12569 UHR pooled cells
3346 Brain
6084 Blood
39391 Neuroblastoma
296 Other
(also 8378 Primates bodymap)
35 bp exon
1 accession from testis
capped 5' end, 1 accession
35 bp exon
840 bp exon
Sequence gap 496 bp
1274 bp exon
Sequence gap 355 bp
1805 bp exon
1805 bp exon
33 accessions, some from lung (seen 4 times)
brain (3), carcinoid (3)
breast carcinoma (2)
eye (2)
capped 5' end, 2 accessions
Validated 3' end, 1 accession
1805 bp exon
52 bp exon
1034 bp [gt-ag] intron
2 GenBank accessions
157 bp exon
157 bp exon
72 bp uORF
157 bp exon
368 bp [gt-ag] intron
271 GenBank accessions
48246 RNA-seq supporting reads
10566 UHR pooled cells
2546 Brain
5939 Blood
28970 Neuroblastoma
225 Other
(also 5805 Primates bodymap)
78 bp exon
78 bp exon
78 bp exon
546 bp [gt-ag] intron
18 GenBank accessions
4611 RNA-seq supporting reads
641 UHR pooled cells
377 Brain
442 Blood
3137 Neuroblastoma
14 Other
(also 17 Primates bodymap)
195 bp exon
195 bp exon
1523 bp [gt-ag] intron
7 GenBank accessions
5603 RNA-seq supporting reads
857 UHR pooled cells
463 Brain
403 Blood
3859 Neuroblastoma
21 Other
(also 38 Primates bodymap)
65 bp exon
65 bp exon
1079 bp [gt-ag] intron
100 GenBank accessions
57956 RNA-seq supporting reads
11551 UHR pooled cells
3087 Brain
4837 Blood
38210 Neuroblastoma
271 Other
(also 7712 Primates bodymap)
31 bp exon
31 bp exon
1 accession from testis
31 bp exon
1054 bp exon
1054 bp exon
93 bp uORF
1054 bp exon
Sequence gap 651 bp
261 bp exon
261 bp exon
261 bp exon
850 bp [gt-ag] intron
119 GenBank accessions
109791 RNA-seq supporting reads
21827 UHR pooled cells
6414 Brain
3219 Blood
78001 Neuroblastoma
330 Other
(also 5246 Primates bodymap)
114 bp exon
114 bp exon
3324 bp [gt-ag] intron
118 GenBank accessions
158319 RNA-seq supporting reads
31645 UHR pooled cells
10622 Brain
5919 Blood
109666 Neuroblastoma
467 Other
(also 10310 Primates bodymap)
171 bp exon
171 bp exon
4 accessions, some from hippocampus (seen once)
testis (once)
capped 5' end, 2 accessions
171 bp exon
148 bp exon
148 bp exon
3166 bp [gt-ag] intron
307 GenBank accessions
72495 RNA-seq supporting reads
13910 UHR pooled cells
4359 Brain
4231 Blood
49721 Neuroblastoma
274 Other
(also 7373 Primates bodymap)
79 bp exon
2990 bp [gt-ag] intron
310 GenBank accessions
64899 RNA-seq supporting reads
11915 UHR pooled cells
3798 Brain
6810 Blood
42101 Neuroblastoma
275 Other
(also 8301 Primates bodymap)
71 bp exon
24554 bp [gt-ag] intron
1 GenBank accession
22 RNA-seq supporting reads
2 UHR pooled cells
4 Brain
3 Blood
13 Neuroblastoma
73 bp exon
73 bp exon
3470 bp [gt-ag] intron
66 GenBank accessions
109758 RNA-seq supporting reads
23239 UHR pooled cells
6539 Brain
6583 Blood
72821 Neuroblastoma
576 Other
(also 7945 Primates bodymap)
1 accession from kidney from renal cell adenocarcinoma
141 bp exon
556 bp exon
556 bp exon
1 accession from hippocampus
capped 5' end, 1 accession
556 bp exon
Alternative mRNAs are shown aligned from 5' to 3' on a virtual genome where introns have been shrunk to a minimal length. Exon size is proportional to length, intron height reflects the number of cDNAs supporting each intron, the small numbers show the support of the introns in deep sequencing (with details in mouse-over) . Introns of the same color are identical, of different colors are different. 'Good proteins' are pink, partial or not-good proteins are yellow, uORFs are green. 5' cap or3' poly A flags show completeness of the transcript.
Read more...
Mouse over the ending of each transcript gives tissues from which the supporting cDNAs were extracted. Details on tissue of origin for each intron and exon is available from the
intron and exons table .
Click on any transcript to open the specific mRNA page, to see the exact cDNA clone support and eventual SNPs and to get details on tissues, sequences, mRNA and protein annotations. Proteins supported by a single continuous cDNA sequence lead to underlining the name/ending of the variant. Names not underlined result from cDNA concatenation in the coding region and should be experimentally checked.
Introns are depicted by broken lines; the height of the top of each intron reflects the relative number of clones supporting this intron.
]^[ A pink broken line denotes an intron with standard boundaries (gt-ag or gc-ag) that is exactly supported (i.e. a cDNA sequence exactly matches the genome over 16 bp, 8 on both sides of the intron).
] ^ ] A blue broken line denotes non-standard introns, exactly supported, but with non-standard at-ac or any other boundaries.
]-[ Pink and
] - ] blue straight lines represent 'fuzzy' introns of the standard and non-standard types respectively, those introns do not follow the 16 bp rule. Black straight lines ]-[denote gaps in the alignments.
Exons: Wide filled pink areas represent putative protein coding regions, narrow empty pink boxes represent the 5'UTR (on the left) and 3' UTR (on the right). Flags identify validated endings: cap site on the 5' side, polyadenylation site on the 3' side. Filled flags correspond to frequent events while empty flags have lesser supporting cDNAs (yet all are validated); at the 3' side, black flags are associated to the main AATAAA signal,
blue flags to any single letter variant of the main . More explanations are given in the
gene help file
Sequences: click on the numbers to get the DNA
Gene neighbors and Navigator on chromosome 18q12.2
ELP2
C
I
R
P
MOCOS
D
C
R
P
D
C
R
P
SLC39A6
R
10
20kb
0
ELP2, 643 accessions, 33 variants
MOCOS, 72 accessions, 6 variants
smeytorbu, 1 accession
skysawbo, 1 accession
kloypler, 1 accession
rerla, 1 accession
reyla, 1 accession
wubler, 1 accession
wobler, 2 accessions
pleepler, 2 accessions
wawbler, 1 accession
zawbler, 1 accession
tula, 1 accession
varla, 1 accession
snawtorbu, 1 accession
smowu, 2 accessions
skypler, 5 accessions
sneetorbu, 1 accession
veyla, 1 accession
snertorbu, 1 accession
vorla, 1 accession
rohari, 1 accession
stusa, 3 accessions
shobler, 1 accession
fuso, 12 accessions
slapler, 4 accessions
slypler, 3 accessions
slopler, 2 accessions
losaw, 5 accessions
snoytorbu, 1 accession
sleypler, 2 accessions
spatorbu, 1 accession
wybler, 1 accession
rehari, 1 accession
smoytorbu, 1 accession
plapler, 2 accessions
snytorbu, 1 accession
snotorbu, 1 accession
plupler, 1 accession
plarpler, 2 accessions
plawpler, 1 accession
plerpler, 1 accession
pleypler, 3 accessions
sola, 1 accession
zeybler, 2 accessions
ploypler, 1 accession
skapler, 2 accessions
choybler, 1 accession
verla, 1 accession
shubler, 1 accession
skarpler, 2 accessions
skoypler, 2 accessions
slupler, 1 accession
bawsy, 1 accession
slerpler, 1 accession
RPRD1A, 504 accessions
17 variants
SLC39A6, 533 accessions
10 variants
fyso, 28 accessions, 3 variants
ZOOM OUT
D :disease,
C :conserved,
I :interactions,
R :regulation,
P :publications
Read more...
G
C18orf21
C
R
ELP2
C
I
R
P
MOCOS
D
C
R
P
R
FHOD3
C
R
P
R
P
MIR187
C
R
R
P
C
R
P
RPRD1A
D
C
R
P
SLC39A6
R
100kb
0
GALNT1, 426 accessions
4 variants
LOC648532, 1 accession
C18orf21, 115 accessions
8 variants
ELP2, 643 accessions, 33 variants
MOCOS, 72 accessions, 6 variants
swoykly, 26 accessions
FHOD3, 142 accessions
12 variants
fleepler, 1 accession
perbler, 1 accession
skoysa, 1 accession
florpler, 1 accession
nerla, 1 accession
peybler, 1 accession
skatorbu, 2 accessions
skytorbu, 1 accession
glapler, 2 accessions
glypler, 1 accession
skutorbu, 2 accessions
sorbler, 1 accession
metiru, 3 accessions
glupler, 1 accession
glarpler, 1 accession
glawpler, 1 accession
rarla, 1 accession
gleypler, 1 accession
kubor, 4 accessions
smusa, 7 accessions
slartorbu, 1 accession
klypler, 1 accession
klopler, 1 accession
smosa, 1 accession
smeysa, 2 accessions
sleytorbu, 2 accessions
reela, 3 accessions
sloytorbu, 2 accessions
smatorbu, 1 accession
klerpler, 2 accessions
smartorbu, 1 accession
smertorbu, 1 accession
smeytorbu, 1 accession
skysawbo, 1 accession
kloypler, 1 accession
rerla, 1 accession
reyla, 1 accession
wubler, 1 accession
wobler, 2 accessions
pleepler, 2 accessions
wawbler, 1 accession
zawbler, 1 accession
tula, 1 accession
varla, 1 accession
snawtorbu, 1 accession
smowu, 2 accessions
skypler, 5 accessions
sneetorbu, 1 accession
veyla, 1 accession
snertorbu, 1 accession
vorla, 1 accession
rohari, 1 accession
stusa, 3 accessions
shobler, 1 accession
fuso, 12 accessions
slapler, 4 accessions
slypler, 3 accessions
slopler, 2 accessions
losaw, 5 accessions
snoytorbu, 1 accession
sleypler, 2 accessions
spatorbu, 1 accession
slorpler, 1 accession
smapler, 4 accessions
smypler, 3 accessions
beysy, 8 accessions
smupler, 2 accessions
flerbler, 1 accession
florbler, 1 accession
lubor, 1 accession
smawpler, 1 accession
motiru, 2 accessions
feyso, 4 accessions
smeepler, 1 accession
spotorbu, 1 accession
smoypler, 1 accession
snopler, 4 accessions
snarpler, 1 accession
spartorbu, 1 accession
sneepler, 2 accessions
speetorbu, 3 accessions
spertorbu, 1 accession
feesy, 1 accession
snerpler, 1 accession
speytorbu, 1 accession
snorpler, 1 accession
dyso, 3 accessions
fleypler, 1 accession
floypler, 2 accessions
skotorbu, 2 accessions
skartorbu, 1 accession
skawtorbu, 1 accession
pula, 1 accession
skeetorbu, 1 accession
skertorbu, 1 accession
gleepler, 1 accession
toybler, 1 accession
vawbler, 1 accession
skeytorbu, 1 accession
skoytorbu, 1 accession
vorbler, 1 accession
slutorbu, 2 accessions
slotorbu, 3 accessions
slorwu, 4 accessions
glorpler, 1 accession
gloypler, 3 accessions
klapler, 4 accessions
derso, 6 accessions
klupler, 2 accessions
slawtorbu, 1 accession
sleetorbu, 2 accessions
hahema, 1 accession
klarpler, 1 accession
klawpler, 1 accession
smytorbu, 2 accessions
smutorbu, 1 accession
kleypler, 1 accession
smawu, 6 accessions
smotorbu, 1 accession
smywu, 2 accessions
smawtorbu, 2 accessions
deyso, 10 accessions
smeetorbu, 1 accession
wybler, 1 accession
rehari, 1 accession
smoytorbu, 1 accession
plapler, 2 accessions
snytorbu, 1 accession
snotorbu, 1 accession
plupler, 1 accession
plarpler, 2 accessions
plawpler, 1 accession
plerpler, 1 accession
pleypler, 3 accessions
sola, 1 accession
zeybler, 2 accessions
ploypler, 1 accession
skapler, 2 accessions
choybler, 1 accession
verla, 1 accession
shubler, 1 accession
skarpler, 2 accessions
skoypler, 2 accessions
slupler, 1 accession
bawsy, 1 accession
slerpler, 1 accession
sloypler, 1 accession
smopler, 1 accession
smarpler, 1 accession
smeypler, 1 accession
smorpler, 1 accession
snapler, 2 accessions
snypler, 1 accession
snupler, 3 accessions
snawpler, 2 accessions
sneypler, 1 accession
duso, 1 accession
MIR187, 3 accessions
dawso, 7 accessions, 2 variants
mimi, 9 accessions
RPRD1A, 504 accessions
17 variants
SLC39A6, 533 accessions
10 variants
fyso, 28 accessions, 3 variants
ZOOM IN
D :disease,
C :conserved,
I :interactions,
R :regulation,
P :publications
Read more...
Annotated mRNA diagrams
The mRNAs diagrams with the aligned cDNA sequence accessions and their mismatches are available in the mRNA pages accessible from the tab at the top of the page, or here:
In Flash:
.g , .f , .a , .d , .b , .e , .vd-u , .o , .c , .j , .vl , .s , .vj , .va , .vi-u , .ve-u , .l , .vf-u , .n , .k , .vg , .vb , .i , .u , .t , .r , .p , .vh , .vk , .h , .q , .m .
or in GIF:
.g , .f , .a , .d , .b , .e , .vd-u , .o , .c , .j , .vl , .s , .vj , .va , .vi-u , .ve-u , .l , .vf-u , .n , .k , .vg , .vb , .i , .u , .t , .r , .p , .vh , .vk , .h , .q , .m
Bibliography:   3 articles in PubMed
? Gene Summary
Gene on genome
mRNA: .a , .b , .c , .d , .e , .f , .g , .h , .i , .j , .k , .l , .m , .n , .o , .p , .q , .r , .s , .t , .u , .va , .vb , .vc-u , .vd-u , .ve-u , .vf-u , .vg , .vh , .vi-u , .vj , .vk , .vl
Alternative mRNAs features, proteins, introns, exons, sequences
Expression Tissue
Function, regulation, related genes C I
To
mine knowledge about the gene, please click the
'Gene Summary' or the
'Function, regulation, related genes ' tab at the top of the page. The
'Gene Summary' page includes all we learnt about the gene, functional annotations of neighboring genes, maps, links to other sites and the bibliography. The
'Function, regulation, related genes ' page includes Diseases (D), Pathways, GO annotations, conserved domains (C), interactions (I) reference into function, and pointers to all genes with the same functional annotation.
To
compare alternative variants , their summarized annotations, predicted proteins, introns and exons, or to access any sequence, click the
'Alternative mRNAs features' tab. To see a
specific mRNA variant diagram, sequence and annotation, click the variant name in the
'mRNA' tab. To examine
expression data from all cDNAs clustered in this gene by AceView, click the
'Expression tissue' .
If you know more about this gene, or found errors, please
share your knowledge. Thank you !