_PSIPackedMsaCell Struct Reference

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#include <blast_psi_priv.h>

List of all members.

Detailed Description

Compact version of the PSIMsaCell structure.

Definition at line 148 of file blast_psi_priv.h.

Public Attributes

unsigned int letter:7
 Preferred letter at this position, in ncbistdaa encoding.
unsigned int is_aligned:1
 Is this letter part of the alignment?

Member Data Documentation

unsigned int _PSIPackedMsaCell::is_aligned
 

Is this letter part of the alignment?

Definition at line 151 of file blast_psi_priv.h.

Referenced by _PSIMsaNew(), _PSIPackedMsaNew(), _PSIPurgeAlignedRegion(), s_PSIDiscardIfUnused(), and s_PSIPurgeSimilarAlignments().

unsigned int _PSIPackedMsaCell::letter
 

Preferred letter at this position, in ncbistdaa encoding.

Definition at line 149 of file blast_psi_priv.h.

Referenced by _PSIMsaNew(), and _PSIPackedMsaNew().

The documentation for this struct was generated from the following file:
Generated on Mon Dec 7 09:48:30 2009 for NCBI C++ ToolKit by  doxygen 1.4.6
Modified on Mon Dec 07 16:22:18 2009 by modify_doxy.py rev. 173732