_PSIPackedMsa Struct Reference

Search Toolkit Book for _PSIPackedMsa

#include <blast_psi_priv.h>

Collaboration diagram for _PSIPackedMsa:

[legend]List of all members.

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Detailed Description

Compact version of PSIMsa structure.

Definition at line 155 of file blast_psi_priv.h.

Public Attributes
PSIMsaDimensions *	dimensions
	dimensions of the msa
_PSIPackedMsaCell **	data
	actual data, dimensions are (dimensions->num_seqs+1) by (dimensions->query_length)
Boolean *	use_sequence
	used to indicate whether a sequence should be used for further processing by the engine (length: num_seqs + 1)

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Member Data Documentation

_PSIPackedMsaCell** _PSIPackedMsa::data

actual data, dimensions are (dimensions->num_seqs+1) by (dimensions->query_length) Definition at line 157 of file blast_psi_priv.h. Referenced by _PSIMsaNew(), _PSIPackedMsaFree(), _PSIPackedMsaNew(), _PSIPurgeAlignedRegion(), s_PSIDiscardIfUnused(), and s_PSIPurgeSimilarAlignments().

PSIMsaDimensions* _PSIPackedMsa::dimensions

dimensions of the msa Definition at line 156 of file blast_psi_priv.h. Referenced by _PSIMsaNew(), _PSIPackedMsaFree(), _PSIPackedMsaGetNumberOfAlignedSeqs(), _PSIPackedMsaNew(), _PSIPurgeAlignedRegion(), s_PSIDiscardIfUnused(), s_PSIPurgeNearIdenticalAlignments(), s_PSIPurgeSelfHits(), and s_PSIPurgeSimilarAlignments().

Boolean* _PSIPackedMsa::use_sequence

used to indicate whether a sequence should be used for further processing by the engine (length: num_seqs + 1) Definition at line 160 of file blast_psi_priv.h. Referenced by _PSIMsaNew(), _PSIPackedMsaFree(), _PSIPackedMsaGetNumberOfAlignedSeqs(), and s_PSIPurgeSimilarAlignments().

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The documentation for this struct was generated from the following file:

• src/algo/blast/core/blast_psi_priv.h

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