_PSIMsaCell Struct Reference

Search Toolkit Book for _PSIMsaCell

#include <blast_psi_priv.h>

Collaboration diagram for _PSIMsaCell:

[legend]List of all members.

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Detailed Description

Internal data structure to represent a position in the multiple sequence alignment data structure.

See also:

_PSIMsa

Definition at line 196 of file blast_psi_priv.h.

Public Attributes
unsigned int	letter:7
	Preferred letter at this position.
unsigned int	is_aligned:1
	Is this letter part of the alignment?
SSeqRange	extents
	Extents of this aligned position.

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Member Data Documentation

SSeqRange _PSIMsaCell::extents

Extents of this aligned position. Definition at line 199 of file blast_psi_priv.h. Referenced by _PSIComputePositionExtents(), _PSIGetLeftExtents(), _PSIGetRightExtents(), and _PSIMsaNew().

unsigned int _PSIMsaCell::is_aligned

Is this letter part of the alignment? Definition at line 198 of file blast_psi_priv.h. Referenced by _PSIGetAlignedSequencesForPosition(), _PSIMsaNew(), s_PSIValidateAlignedColumns(), and s_PSIValidateNoFlankingGaps().

unsigned int _PSIMsaCell::letter

Preferred letter at this position. Definition at line 197 of file blast_psi_priv.h. Referenced by _PSICalculateMatchWeights(), _PSICalculateNormalizedSequenceWeights(), _PSIGetAlignedSequencesForPosition(), _PSIMsaNew(), s_PSIValidateAlignedColumns(), and s_PSIValidateNoFlankingGaps().

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The documentation for this struct was generated from the following file:

• src/algo/blast/core/blast_psi_priv.h

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