PSIMsaCell Struct Reference

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#include <blast_psi.h>

List of all members.

Detailed Description

Structure to describe the characteristics of a position in the multiple sequence alignment data structure.

Definition at line 49 of file blast_psi.h.

Public Attributes

Uint1 letter
 Preferred letter at this position, in ncbistdaa encoding.
Boolean is_aligned
 Is this letter part of the alignment?

Member Data Documentation

Boolean PSIMsaCell::is_aligned
 

Is this letter part of the alignment?

Definition at line 52 of file blast_psi.h.

Referenced by BOOST_AUTO_TEST_CASE(), CdPssmInput::countResiduesInRow(), CPssmInputFlankingGaps::CPssmInputFlankingGaps(), CPssmInputGapsInQuery::CPssmInputGapsInQuery(), PssmMaker::getPssmColumnResidues(), CdPssmInput::Process(), PSIMsaNew(), CPssmInputTestData::SetupSelfHit(), SU_PSSMInput::SU_PSSMInput(), CdPssmInput::unalignLeadingTrailingGaps(), CPsiBlastInputClustalW::x_CopyQueryToMsa(), and CPsiBlastInputData::x_ProcessDenseg().

Uint1 PSIMsaCell::letter
 

Preferred letter at this position, in ncbistdaa encoding.

Definition at line 50 of file blast_psi.h.

Referenced by BOOST_AUTO_TEST_CASE(), CalculateInformationContent(), CdPssmInput::copyRow(), CPssmInputFlankingGaps::CPssmInputFlankingGaps(), CPssmInputGapsInQuery::CPssmInputGapsInQuery(), FillInAlignmentData(), PssmMaker::getPssmColumnResidues(), CdPssmInput::Process(), PSIMsaNew(), CPssmInputTestData::SetupSelfHit(), SU_PSSMInput::SU_PSSMInput(), CdPssmInput::unalignLeadingTrailingGaps(), CPsiBlastInputClustalW::x_CopyQueryToMsa(), and CPsiBlastInputData::x_ProcessDenseg().

The documentation for this struct was generated from the following file:
Generated on Mon Dec 7 15:46:05 2009 for NCBI C++ ToolKit by  doxygen 1.4.6
Modified on Mon Dec 07 16:24:29 2009 by modify_doxy.py rev. 173732