AascanTestFixture Struct Reference

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Collaboration diagram for AascanTestFixture:

[legend]List of all members.

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Detailed Description

The test fixture to use for all test cases in this file.

Definition at line 87 of file aascan_unit_test.cpp.

Public Member Functions
	AascanTestFixture ()
	~AascanTestFixture ()
Public Attributes
BLAST_SequenceBlk *	query_blk
BLAST_SequenceBlk *	subject_blk
LookupTableWrap *	lookup_wrap_ptr
LookupTableOptions *	lookup_options
BlastScoringOptions *	score_options
BlastScoreBlk *	sbp
BlastOffsetPair *	offset_pairs

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Constructor & Destructor Documentation

AascanTestFixture::AascanTestFixture (   )  [inline]

Definition at line 97 of file aascan_unit_test.cpp. References BLAST_FillLookupTableOptions(), BLAST_FillScoringOptions(), BLAST_GAP_EXTN_PROT, BLAST_GAP_OPEN_PROT, Blast_ScoreBlkMatrixInit(), BLAST_WORD_THRESHOLD_BLASTP, BLASTAA_SEQ_CODE, BlastChooseProteinScanSubject(), BlastFindMatrixPath(), BlastScoreBlkNew(), BlastScoringOptionsNew(), BlastSeqBlkNew(), BlastSeqBlkSetSequence(), BlastSeqLocFree(), BlastSeqLocNew(), SBlastSequence::data, eBlastEncodingProtein, eBlastTypeBlastp, eNa_strand_unknown, eNoSentinels, FALSE, GetOffsetArraySize(), GetSequence(), id, CTestObjMgr::Instance(), BLAST_SequenceBlk::length, SBlastSequence::length, lookup_options, lookup_wrap_ptr, LookupTableOptionsNew(), LookupTableWrapInit(), malloc(), BLAST_SequenceBlk::num_seq_ranges, offset_pairs, query_blk, AutoPtr< X, Del >::release(), sbp, score_options, BLAST_SequenceBlk::sequence, BLAST_SequenceBlk::sequence_start, and subject_blk.

AascanTestFixture::~AascanTestFixture (   )  [inline]

Definition at line 230 of file aascan_unit_test.cpp. References BlastScoreBlkFree(), BlastScoringOptionsFree(), BlastSequenceBlkFree(), lookup_options, lookup_wrap_ptr, LookupTableOptionsFree(), LookupTableWrapFree(), offset_pairs, query_blk, sbp, score_options, sfree, and subject_blk.

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Member Data Documentation

LookupTableOptions* AascanTestFixture::lookup_options

Definition at line 92 of file aascan_unit_test.cpp. Referenced by AascanTestFixture(), and ~AascanTestFixture().

LookupTableWrap* AascanTestFixture::lookup_wrap_ptr

Definition at line 91 of file aascan_unit_test.cpp. Referenced by AascanTestFixture(), and ~AascanTestFixture().

BlastOffsetPair* AascanTestFixture::offset_pairs

Definition at line 95 of file aascan_unit_test.cpp. Referenced by AascanTestFixture(), and ~AascanTestFixture().

BLAST_SequenceBlk* AascanTestFixture::query_blk

Definition at line 89 of file aascan_unit_test.cpp. Referenced by AascanTestFixture(), and ~AascanTestFixture().

BlastScoreBlk* AascanTestFixture::sbp

Definition at line 94 of file aascan_unit_test.cpp. Referenced by AascanTestFixture(), and ~AascanTestFixture().

BlastScoringOptions* AascanTestFixture::score_options

Definition at line 93 of file aascan_unit_test.cpp. Referenced by AascanTestFixture(), and ~AascanTestFixture().

BLAST_SequenceBlk* AascanTestFixture::subject_blk

Definition at line 90 of file aascan_unit_test.cpp. Referenced by AascanTestFixture(), and ~AascanTestFixture().

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The documentation for this struct was generated from the following file:

• src/algo/blast/unit_tests/api/aascan_unit_test.cpp

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