AaLookupBackboneCell Struct Reference

Search Toolkit Book for AaLookupBackboneCell

#include <blast_aalookup.h>

List of all members.

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Detailed Description

structure defining one cell of the compacted lookup table

Definition at line 53 of file blast_aalookup.h.

Public Attributes
Int4	num_used
	number of hits stored for this cell
union {
Int4   overflow_cursor
	integer offset into the overflow array where the list of hits for this cell begins
Int4   entries [3]
	if the number of hits for this cell is AA_HITS_PER_CELL or less, the hits are all stored directly in the cell
}	payload
	union that specifies either entries stored right on the backbone if fewer than AA_HITS_PER_CELL are present or a pointer to where the hits are stored (off-backbone).

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Member Data Documentation

Int4 AaLookupBackboneCell::entries[3]

if the number of hits for this cell is AA_HITS_PER_CELL or less, the hits are all stored directly in the cell Definition at line 60 of file blast_aalookup.h. Referenced by s_BlastAaScanSubject().

Int4 AaLookupBackboneCell::num_used

number of hits stored for this cell Definition at line 54 of file blast_aalookup.h.

Int4 AaLookupBackboneCell::overflow_cursor

integer offset into the overflow array where the list of hits for this cell begins Definition at line 57 of file blast_aalookup.h. Referenced by s_BlastAaScanSubject().

union { ... } AaLookupBackboneCell::payload

union that specifies either entries stored right on the backbone if fewer than AA_HITS_PER_CELL are present or a pointer to where the hits are stored (off-backbone). Referenced by s_BlastAaScanSubject().

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The documentation for this struct was generated from the following file:

• include/algo/blast/core/blast_aalookup.h

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