include/objmgr/seq_map_switch.hpp File Reference

#include <objmgr/seq_map.hpp>
#include <objmgr/bioseq_handle.hpp>
#include <objects/seq/seq_id_handle.hpp>
#include <util/range.hpp>
#include <vector>
#include <list>
#include <map>

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Classes
class	CSeqMapSwitchPoint
Typedefs
typedef vector< CRef< CSeqMapSwitchPoint > >	TSeqMapSwitchPoints
typedef list< CRef< CSeq_align > >	TSeqMapSwitchAligns
Functions
CRef< CSeqMapSwitchPoint >	GetSwitchPoint (const CBioseq_Handle &seq, const CSeq_align &align)
TSeqMapSwitchPoints	GetAllSwitchPoints (const CBioseq_Handle &seq, const TSeqMapSwitchAligns &aligns)
TSeqMapSwitchPoints	GetAllSwitchPoints (const CBioseq_Handle &seq)

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Typedef Documentation

typedef list<CRef<CSeq_align> > TSeqMapSwitchAligns

Definition at line 129 of file seq_map_switch.hpp.

typedef vector<CRef<CSeqMapSwitchPoint> > TSeqMapSwitchPoints

Definition at line 128 of file seq_map_switch.hpp.

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Function Documentation

TSeqMapSwitchPoints GetAllSwitchPoints (  const CBioseq_Handle &  seq  )

Definition at line 659 of file seq_map_switch.cpp. References GetAllSwitchPoints(), and CBioseq_Handle::GetInst_Hist().

TSeqMapSwitchPoints GetAllSwitchPoints (  const CBioseq_Handle &  seq, const TSeqMapSwitchAligns &  aligns )

Definition at line 631 of file seq_map_switch.cpp. Referenced by GetAllSwitchPoints(), and CSGSwitchPointJob::x_Execute().

CRef<CSeqMapSwitchPoint> GetSwitchPoint (  const CBioseq_Handle &  seq, const CSeq_align &  align )

Definition at line 597 of file seq_map_switch.cpp. References align, and NCBI_THROW.

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