include/algo/align/ngalign/ngalign_interface.hpp File Reference

#include <corelib/ncbistd.hpp>
#include <corelib/ncbiobj.hpp>
#include <objects/seqloc/Na_strand.hpp>
#include <algo/align/ngalign/result_set.hpp>

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Classes
class	ISequenceSet
class	IAlignmentFactory
class	IAlignmentFilter
class	IAlignmentScorer
Typedefs
typedef CRef< objects::CSeq_align_set >	TAlignSetRef
typedef CRef< blast::CSearchResultSet >	TResultsSetRef
typedef CRef< CAlignResultsSet >	TAlignResultsRef

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Typedef Documentation

typedef CRef<CAlignResultsSet> TAlignResultsRef

Definition at line 64 of file ngalign_interface.hpp.

typedef CRef<objects::CSeq_align_set> TAlignSetRef

Definition at line 59 of file ngalign_interface.hpp.

typedef CRef<blast::CSearchResultSet> TResultsSetRef

Definition at line 63 of file ngalign_interface.hpp.

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