NCBI C++ ToolKit: Class Members

Here is a list of all class members with links to the classes they belong to:

- x -

x : Vector, CFeatureTypesDlg, SeqItem
X : CVect4< T >, CVect3< T >, CVect2< T >, CQuat< T >, CGlPoint< T >, CBBox< N >
x1 : GlZoomSpec::GlDim
x2 : GlZoomSpec::GlDim
x_Abort() : CBDB_Transaction
x_AbortConnection() : CReader
x_Absorb() : CSubjectRanges
x_AcceptRequest() : CPoolOfThreads< TRequest >
x_AccessState() : CFeatureCheckPanel
x_AccessViolationMessage() : CNetScheduleHandler
x_AcknowledgeBlastSequence() : CAlignFormatUtil
x_ActOnDescriptors() : CCleanup_imp
x_ActOnDescriptorsForMerge() : CCleanup_imp
x_ActOnSeqAnnots() : CCleanup_imp
x_ActualizeDeps() : CNcbiTestApplication
x_AdaptiveDepth() : CSGSegmentMapJob
x_Add() : CDeleteSeqFeatCommand, CChangeSeqFeatCommand, CFlatSeqLoc, CSeqMap, CSeq_loc_Conversion_Set, CObjectIndex, CCompoundRWRegistry, CNetScheduleKeys
x_AddAlign() : CAlnTableDS
x_AddAlignmentLayout() : CAlignmentTrack
x_AddAlignRanges() : CPhrap_Contig
x_AddAllFeaturesById() : CTSE_Info
x_AddAmbig() : CAmbigDataBuilder
x_AddAndClear() : SCigarAlignment
x_AddAnnotChunkId() : CBioseq_Base_Info
x_AddAnnotDescr() : CAnalysisFileLoader
x_AddAnnotPlace() : CTSE_Split_Info, CTSE_Chunk_Info
x_AddAnnotType() : CTSE_Chunk_Info
x_AddAssemblyChunkId() : CBioseq_Info
x_AddAssemblyInfo() : CTSE_Split_Info, CTSE_Chunk_Info
x_AddAttribute() : CGFFReader
x_AddAuthors() : CReferenceItem
x_AddBaseSegFeats() : CPhrap_Contig
x_AddBioseqChunkId() : CBioseq_set_Info
x_AddBioseqId() : CTSE_Chunk_Info
x_AddBioseqPlace() : CTSE_Split_Info, CTSE_Chunk_Info
x_AddBlock() : CWriteDB_PackedBuffer< ALLOCSIZE >, CMemStore
x_AddBlocksSet() : CNCMMSizePool
x_AddCategorizedDBs() : CNetBLASTUIDataSource
x_AddCDSmRNA_SNPLayout() : CGeneModelTrack
x_AddCDSProduct_FeatsLayout() : CGeneModelTrack
x_AddChildFolder() : CProjectFolderPrx
x_AddChildItem() : CProjectFolderPrx
x_AddChildItems() : CProjectTreePanel
x_AddChoice() : CSeqdesc_CI
x_AddClient() : CWindowManager, CDockContainer, CFrameworkDemoGUI
x_AddClientInfo_NoLock() : CQueueClientInfoList
x_AddClientInSplitter() : CDockContainer
x_AddClientInTab() : CDockContainer
x_AddClientToHiddenPos() : CDockContainer
x_AddColumnAliases() : CAnalysisFile
x_AddComment() : CFlatGatherer
x_AddConnection() : CReader
x_AddConnectionSlot() : CReader, CId2Reader, CId1Reader, CCacheReader
x_AddContig() : CPhrapReader
x_AddConversion() : CSeq_loc_Mapper_Base
x_AddConversionInfo() : CReaderBase
x_AddDefaultArgs() : CNcbiApplication
x_AddDefaultFieldsToShow() : CBlastTabularInfo
x_AddDesc() : CArgDescriptions
x_AddDescInfo() : CTSE_Split_Info, CTSE_Chunk_Info
x_AddDescrChunkId() : CBioseq_Base_Info
x_AddDummyTest() : CNcbiTestApplication
x_AddEnd() : CSeqMap
x_AddErrGetPut() : SBDB_CacheUnitStatistics
x_AddError() : CNetBlastSubmittingJob
x_AddExtraDllPath() : CDllResolver
x_AddFasta() : CMakeBlastDBApp
x_AddFeat_ids() : CTSE_Chunk_Info
x_AddFeature() : CGuideTreeCalc, CGFFFormatter
x_AddFeatureDesc() : CGuideTreeCalc
x_AddFeaturesById() : CTSE_Info
x_AddFeaturesLayout() : CFeatureTrack
x_AddFieldToShow() : CBlastTabularInfo
x_AddFilenameRow() : CMultiFileInput
x_AddFilenames() : CMultiFileInput
x_AddFilter() : CSnpFilterUI
x_AddFlavor() : CClipboard
x_AddFont() : CPdfFontHandler
x_AddFQ() : IFlatQVal
x_AddFTableBiosrcQuals() : CFeatureItem
x_AddFTableBondQuals() : CFeatureItem
x_AddFTableCdregionQuals() : CFeatureItem
x_AddFTableDbxref() : CFeatureItem
x_AddFTableExtQuals() : CFeatureItem
x_AddFTableGeneQuals() : CFeatureItem
x_AddFTableProtQuals() : CFeatureItem
x_AddFTablePsecStrQuals() : CFeatureItem
x_AddFTableQual() : CFeatureItem
x_AddFTableQuals() : CFeatureItem
x_AddFTableRegionQuals() : CFeatureItem
x_AddFTableRnaQuals() : CFeatureItem
x_AddFTableSiteQuals() : CFeatureItem
x_AddFullSeq_data() : CCachedSequence
x_AddGap() : CSeqMap
x_AddGBQualToFeature() : CFeature_table_reader_imp
x_AddGeneID() : CGFFFormatter, CGFF3_Formatter
x_AddGiInterval() : CSplitParser
x_AddGis() : CWriteDB_IsamIndex
x_AddGiString() : CWriteDB_IsamIndex
x_AddGiWhole() : CSplitParser
x_AddGoQuals() : CFeatureItem
x_AddGraph() : CHitMatrixRenderer
x_AddGraphs() : CEpigenomicsTrack
x_AddGraphToMap() : CSGSeqGraphJob
x_AddGSDBComment() : CFlatGatherer
x_AddHit() : CCompartApp::CCompartment
x_AddHIVModifiers() : CAutoDefModifierCombo
x_AddHour() : CTime
x_AddIconToImageList() : CAppExplorerService
x_AddId() : CAlnStats< _TAlnIdVec >
x_AddID() : CFlatSeqLoc
x_AddImageString() : CPageList
x_AddImprint() : CReferenceItem
x_AddInactiveImageString() : CPageList
x_AddIntergenicSpacerFeatures() : CAutoDef
x_AddInterval() : CSplitParser
x_AddIntervalToFeature() : CFeature_table_reader_imp
x_AddItem() : CGBProjectTool, CFlatFileRetrieveJob, CFlatFeatureRetrieveJob, CItemSelectionPanel
x_AddIter() : CSyncQueue_ConstAccessGuard< Type, Container >
x_AddJobRecord() : CAppJobDispatcher
x_AddKeyword() : CKeywordsItem
x_AddLandMarkFeaturesLayout() : CGeneModelTrack
x_AddLBCookie() : CCgiApplication
x_AddLevelRow() : CTableSortMultiChoice
x_AddLevels() : CTableSortMultiChoice
x_AddListenerToPool() : CEventHandler
x_AddLocal() : CWriteDB_IsamIndex
x_AddMainFeaturesLayout() : CGeneModelTrack
x_AddMasksForSeqId() : CBuildDatabase
x_AddMessage() : CwxLogDiagHandler
x_AddMiscRNAFeatures() : CAutoDef
x_AddMissingProteinMolInfo() : CCleanup_imp
x_AddMultiwayAlignment() : CFastaReader
x_AddNewEvent() : CNCFileSystem
x_AddNewRow() : CColorPanel
x_AddNewSegment() : CMultiAligner
x_AddNodesToMap() : CDockLayoutTree
x_AddNucleotidePattern() : CSeqSearch
x_AddObject() : CAnnot_Collector
x_AddObjectMapping() : CAnnot_Collector
x_AddObjectToSlot() : CTimeLine< BV >
x_AddOneRemoteSequence() : CBuildDatabase
x_AddOrgModString() : CAutoDefModifierCombo
x_AddPairwise() : CMergedPairwiseAln
x_AddPairwiseAlignments() : CFastaReader
x_AddPatent() : CWriteDB_IsamIndex
x_AddPattern() : CSeqSearch, CFindRSites
x_AddPdb() : CWriteDB_IsamIndex
x_AddPDBBlock() : CDBSourceItem
x_AddPIRBlock() : CDBSourceItem
x_AddPosition() : CCpGIslands
x_AddPostMappings() : CAnnot_Collector
x_AddPRFBlock() : CDBSourceItem
x_AddProductIdQuals() : CFeatureItem
x_AddProgramParams() : CBLASTParams
x_AddProject() : CWorkspaceFolderPrx
x_AddProtFeature() : CPromote
x_AddQual() : CSourceFeatureItem, CFeatureItem
x_AddQualCdsProduct() : CFeatureItem
x_AddQualCitation() : CFeatureItem
x_AddQualCodeBreak() : CFeatureItem
x_AddQualCodedBy() : CFeatureItem
x_AddQualCodonStart() : CFeatureItem
x_AddQualDb() : CFeatureItem
x_AddQualDbXref() : CFeatureItem
x_AddQualExceptions() : CFeatureItem
x_AddQualExpInv() : CFeatureItem
x_AddQualExt() : CFeatureItem
x_AddQualGeneXref() : CFeatureItem
x_AddQualifierToBioSrc() : CFeature_table_reader_imp
x_AddQualifierToCdregion() : CFeature_table_reader_imp
x_AddQualifierToFeature() : CFeature_table_reader_imp
x_AddQualifierToGene() : CFeature_table_reader_imp
x_AddQualifierToImp() : CFeature_table_reader_imp
x_AddQualifierToRna() : CFeature_table_reader_imp
x_AddQualityFeat() : CPhrap_Read
x_AddQualNote() : CFeatureItem
x_AddQualOldLocusTag() : CFeatureItem
x_AddQualOperon() : CFeatureItem
x_AddQualPartial() : CFeatureItem
x_AddQualProtActivity() : CFeatureItem
x_AddQualProtComment() : CFeatureItem
x_AddQualProtDesc() : CFeatureItem
x_AddQualProtEcNumber() : CFeatureItem
x_AddQualProteinConflict() : CFeatureItem
x_AddQualProteinId() : CFeatureItem
x_AddQualProtMethod() : CFeatureItem
x_AddQualProtNote() : CFeatureItem
x_AddQualPseudo() : CFeatureItem
x_AddQuals() : CSourceFeatureItem, CFeatureItem, CFeatureItemBase
x_AddQualsBond() : CFeatureItem
x_AddQualsCdregion() : CFeatureItem
x_AddQualSeqfeatNote() : CFeatureItem
x_AddQualsExt() : CFeatureItem
x_AddQualsGb() : CFeatureItem
x_AddQualsGene() : CFeatureItem
x_AddQualsProductId() : CFeatureItem
x_AddQualsProt() : CFeatureItem
x_AddQualsRegion() : CFeatureItem
x_AddQualsRna() : CFeatureItem
x_AddQualsSite() : CFeatureItem
x_AddQualTranslation() : CFeatureItem
x_AddQualTranslationException() : CFeatureItem
x_AddQualTranslationTable() : CFeatureItem
x_AddQuery() : oligofar::CQueryHash
x_AddQueueTask() : CScheduler_MT
x_AddRead() : CPhrapReader
x_AddReadLocFeats() : CPhrap_Contig
x_AddRecent() : CSeqDBAtlas
x_AddRemoteSequences() : CBuildDatabase
x_AddReplaceQual() : CCleanup_imp
x_AddRow() : CLocationListCtrl
x_AddRpsFreqsToCluster() : CMultiAligner
x_AddRptTypeQual() : CFeatureItem
x_AddRptUnitQual() : CFeatureItem
x_AddSavedName() : CDataType
x_AddScope() : CScopeTransaction_Impl
x_AddSegment() : CSeqMap
x_AddSegmentMapLayout() : CSegmentMapTrack
x_AddSeq_data() : CTSE_Split_Info, CTSE_Chunk_Info
x_AddSeq_dataChunkId() : CBioseq_Info
x_AddSeqEntries() : CMakeBlastDBApp
x_AddSequenceData() : CMakeBlastDBApp
x_AddSettingsSet() : CThemeSet
x_AddSetToList() : CNCMMSizePool
x_AddSNP() : CSeq_annot_SNP_Info
x_AddSnpsLayout() : CSnpTrack
x_AddSorted() : CSnpFilterUI
x_AddSPBlock() : CDBSourceItem
x_AddSplitSeqChunk() : CCachedSequence
x_AddStdString() : CWriteDB_IsamIndex
x_AddString() : CWriteDB_IsamIndex
x_AddStringData() : CWriteDB_IsamIndex
x_AddStringIds() : CWriteDB_IsamIndex
x_AddSubsourceString() : CAutoDefModifierCombo
x_AddSubtrack() : CTrackContainer
x_AddSynonym() : CScope_Impl
x_AddSystemView() : CGBenchGUI
x_AddTagFeats() : CPhrap_Contig, CPhrap_Read
x_AddTasks() : CTaskViewModel
x_AddTextId() : CWriteDB_IsamIndex
x_AddToExistingProject() : CDataLoadingAppJob
x_AddToIdx() : CLDS_BuildIdIdx
x_AddToLRUImpl() : CNCMMDBPage
x_AddToMustLeft() : CNcbiTestTreeElement
x_AddToMustRight() : CNcbiTestTreeElement
x_AddToProject() : CDataMiningPanel
x_AddToReadGroupNoLock() : CQueue
x_AddToRegistry() : CODBCContext, CDBLibContext, CTLibContext
x_AddToResults() : CSequenceSearchJob, COrfSearchJob, CFeatureSearchJob, CCpgSearchJob, CComponentSearchJob, CFeatureSearchJob
x_AddToSelection() : CTextSelHandler, CLinearSelHandler
x_AddToTaxidMap() : CAltValidator
x_AddTrace() : CTracingHandler
x_AddTraceIds() : CWriteDB_IsamIndex
x_AddTranslations() : CSixFramesTransTrack
x_AddTSE() : CAnnot_Collector
x_AddTSEAnnots() : CDataSource
x_AddTSEBioseqAnnots() : CDataSource
x_AddTSEOrphanAnnots() : CDataSource
x_AddTSESetWithAnnots() : CScope_Impl
x_AddUnloadedSeq_data() : CSeqMap
x_AddUseGiEntryInSeqalign() : CSeqAlignFilter
x_AddValue() : CClipboard
x_AddValueEx() : CClipboard
x_AddVariationsFromFeature() : CSeqTextDataSource
x_AddView() : CFrameworkDemoGUI
x_AddVolume() : CSeqDBVolSet
x_AddWhole() : CSplitParser
x_AddXref_ids() : CTSE_Chunk_Info
x_AddXX() : CEmblFormatter
x_AdjsutToMasterPane() : CPhyloTreePane, CHitMatrixRenderer, CHitMatrixPane
x_AdjustBottomRuler() : CSeqTextPane
x_AdjustColumns() : CAlnSpanVertModel, CAlnTableDS
x_AdjustCrossPane() : CCrossAlnRenderer
x_AdjustDay() : CTime
x_AdjustLeftRuler() : CSeqTextPane
x_AdjustProgram() : CRemoteBlast
x_AdjustSeqTypesToProt() : CSeq_loc_Mapper_Base
x_AdjustTime() : CTime
x_AdjustTimeImmediately() : CTime
x_AdjustToAlgoSelector() : CCleanupAlignmentsParamsPanel
x_AdjustToMaster() : CSeqGraphicRenderer
x_AdjustToMinScale() : CSeqGraphicRenderer
x_AdjustVisible() : CAlnMultiWidget
x_AdjustVisibleRect() : CGlPane
x_AdvanceChunkPtr() : CNCMMChunksPool
x_AdvanceEOLCRLF() : CStreamLineReader
x_AdvanceEOLSimple() : CStreamLineReader
x_AdvanceEOLUnknown() : CStreamLineReader
x_AdvanceGiList() : CSeqDBIsam
x_AdvanceIsamIndex() : CSeqDBIsam
x_Align() : CSplicedAligner32, CSplicedAligner16, CPSSMAligner, CBandAligner, CNWAligner
x_Align_Impl() : CNgAligner
x_AlignClusterQueries() : CMultiAligner
x_AlignFillerBlocks() : CMultiAligner
x_AlignInClusters() : CMultiAligner
x_AlignProfile() : CPSSMAligner
x_AlignProfileProfile() : CMultiAligner
x_AlignProfileProfileUsingHit() : CMultiAligner
x_AlignProgressive() : CMultiAligner
x_AlignPSSM() : CPSSMAligner
x_AlignSizeToPage() : CNCMMCentral
x_AlignToBottom() : CNCMMCentral
x_AlignToTop() : CNCMMCentral
x_Alloc() : CSeqDB_BitSet
x_AllocAlignedLongWay() : CNCMMCentral
x_Allocate() : CSimpleBufferT< T, ResizeStrategy >
x_AllocateBlock() : CNCMMSizePool
x_AllocateQueue() : CQueueDataBase
x_AllocBuffer() : CScoringJob
x_AllocConnection() : CReader
x_AllocHash() : CNCMMDBPagesHash
x_AllocType() : CSeqDBVol
x_Allowed() : CPhyloTreeFilter_Depth, CPhyloTreeFilter_Distance, CPhyloTreeFilter_Export, CPhyloTreeFilter_Selector, IPhyloTreeFilter
x_AllowHIVRule() : CAutodefParamsPanel
x_AllViewsItemSelected() : CProjectTreePanel
x_AlnRangeFromSeqRange() : CAlignMarkHandler
x_AlreadyContains() : CQuerySet
x_AnnotBrowserSelectionChanged() : CwxAnnotConfigDlg
x_Append() : CTar, CGeneInfo, CStringUTF8
x_AppendChar() : CStringUTF8
x_AppendEncoded() : CGFF3_Formatter
x_AppendFile() : CTar
x_AppendOptionForManager() : COpenDlg
x_AppendSubNode() : CSeqDBAliasNode
x_AppendToReadView() : CGuiRegistry::CReadView
x_AppendToView() : CGuiRegistry
x_ApplyFilter() : CSnpTableJob, CSnpTableData
x_ApplyInteractions() : CBlastOptionsBuilder
x_ApplyNegativeList() : CSeqDBOIDList
x_ApplyPatches() : CDataLoaderPatcher
x_ApplyToFrameContainer() : CDockManager
x_ApplyTranscript() : CNWFormatter
x_ApplyUserGiList() : CSeqDBOIDList
x_Approve() : CRequestRateControl
x_AreAllDescriptorsInSetIdentical() : CCleanup_imp
x_AreMastersBusy() : CGridWorkerNode
x_ArgsToBlastOptions() : CBLASTParams
x_ArgumentMatch() : CNetServProtoParserBase
x_AsBasicString() : CStringUTF8
x_AsBitString() : CBase64BinaryDataType, COctetStringDataType
x_AscendToRoot() : CPhyloTreeDataSource
x_AssertIndexValid() : CSelectionControl
x_AssertNotOpen() : CGlPane
x_AssertOrtho() : CGlPane
x_AssertRowValid() : CObjectListTableModel, CSparseAlignment
x_AssertValid() : CObjectList
x_AssertValidColumn() : CObjectList
x_AssertValidRow() : CObjectList
x_Assign() : CPackString, CTSE_Lock, CHTMLException, CAlnVecMultiDataSource, CDB_MultiEx, CDB_SQLEx, CDB_RPCEx, CDB_Exception, CException, CPIDGuardException, CExprParserException, CCgiException
x_AssignCmdParams() : CNCMessageHandler
x_AssignDefaultResFreqs() : CMultiAligner
x_AssignErrCode() : CException
x_AssignId() : CMaskInfoRegistry
x_AssignParams() : CODBC_BCPInCmd, CODBC_RPCCmd, CODBC_LangCmd, CDBL_BCPInCmd, CDBL_CursorCmd, CDBL_RPCCmd, CDBL_LangCmd, CTL_BCPInCmd, CTL_CursorCmdExpl, CTL_CursorCmd, CTL_RPCCmd, CTL_LangCmd
x_AssignParents() : CFeatTree
x_AssignParentsByOverlap() : CFeatTree
x_AssignParentsByRef() : CFeatTree
x_AssignRPSResFreqs() : CMultiAligner
x_AssignViewIndex() : CGBDocument
x_AtLeastOneProjectLoaded() : CProjectTreePanel
x_Attach() : CSplitParser
x_AttachAnnot() : CScope_Impl, CBioseq_Base_Info
x_AttachClusterTrees() : CMultiAligner
x_AttachContents() : CSeq_entry_Info
x_Attached() : CTSE_Chunk_Info
x_AttachEntry() : CScope_Impl, CBioseq_set_Info
x_AttachMap() : CBioseq_Info
x_AttachObject() : CTSE_Info_Object
x_AttachPage() : CNCMMDBCache
x_AttachProjectItem() : CProjectPrx
x_AttachProjectItems() : CProjectPrx
x_AttachToOM() : CScope_Impl
x_AttachToPool() : CThreadPool_Controller
x_AttachToProject() : CProjectViewBase
x_AttachTSE() : CScopeInfo_Base, CBioseq_ScopeInfo
x_AttachValue() : CBlastOptionsRemote
x_AttachView() : CGBDocument
x_AttribType() : DTDParser
x_AttribValue() : DTDParser
x_Authors() : CGenbankFormatter
x_AutoComplete() : CAutoCompleteCombo
x_AutoDetectGeneticCodes() : CBlastQuerySourceOM
x_AutoGuessFormat() : CFileLoadManager
x_AutoStartMonitoring() : CNetBLASTUIDataSource
x_Available() : CwxClipboardHelper< wxString >, CwxClipboardHelper< T >
x_BackgroundJob() : CSGGenBankDS, CAnnotCompareDS
x_Backspace() : CTar
x_BackTrace() : oligofar::TAligner_SW< CQuery, CSubject >
x_BackupEndPos() : CSeqVector_CI
x_BackupName() : CRotatingLogStream
x_BackupPos() : CSeqVector_CI
x_BackupSize() : CSeqVector_CI
x_Bad() : CStaticArraySearchBase< KeyValueGetter, KeyCompare >
x_BarcodeComment() : CFlatGatherer
x_BaseParentAttach() : CTSE_Info_Object
x_BaseParentDetach() : CTSE_Info_Object
x_BaseToIndex() : CMatrixScoringMethod
x_Begin() : CSyncQueue< Type, Container >
x_BeginNamespace() : CObjectOStreamXml
x_BestFont() : CPhyloTreeLabel
x_BindParam_ODBC() : CStatementBase
x_BinN() : CDensityMap< CntType >
x_BioseqSanityCheck() : CBlastQuerySourceBioseqSet
x_BlkSetHints() : CTL_BCPInCmd
x_BooleanSetOperation() : CSeqDBIdSet
x_BoxCharacters() : CSequenceTextGraph
x_Brighter() : CPhyloTreeNode
x_Broadcast() : CSelectionService
x_BrowserClicked() : CFeatCheckBrowser
x_Buf : CConn_Streambuf, CRWStreambuf
x_BufferGetColumn() : CScoringJob
x_BufferGetSeq() : CScoringJob
x_BuildAlignDataSource() : CSGAlignmentJob
x_BuildAlignment() : CMultiAligner
x_BuildAlignmentIterative() : CMultiAligner
x_BuildAncillaryData() : CBl2Seq
x_BuildDatabase() : CMakeBlastDBApp
x_BuildDeflinesFromBioseq() : CWriteDB_Impl
x_BuildFullTree() : CMultiAligner
x_BuildGetSeqPartsRequest() : CBlastServices
x_BuildGetSeqRequest() : CBlastServices
x_BuildGraph() : CObjectConverter
x_BuildHeaderFields() : CWriteDB_GiMaskIndex, CWriteDB_ColumnIndex
x_BuildHeaderStrings() : CWriteDB_ColumnIndex
x_BuildHtmlBar() : CVecscreen
x_BuildHtmlTable() : CAlnGraphic
x_BuildMaskAlgorithmList() : CSeqDBImpl
x_BuildMatrix() : oligofar::TAligner_SW< CQuery, CSubject >
x_BuildMetaData() : CWriteDB_ColumnIndex
x_BuildNonOverlappingRange() : CVecscreen
x_BuildObjectList() : CLDBlockGlyph, CGwasGlyph, CBinsGlyph
x_BuildQueryFromPssm() : CBlastFormatterApp
x_BuildTreeItems() : CBLAST_DB_Dialog
x_BuildVisibleBranch() : CDockContainer
x_BuildVisibleTree() : CDockContainer
x_byCount() : CValuesCount
x_BytesNeeded() : CStringUTF8
x_CacheEndPos() : CSeqVector_CI
x_CacheItems() : CResultSet
x_CacheOffset() : CSeqVector_CI
x_CachePos() : CSeqVector_CI
x_CacheSize() : CSeqVector_CI
x_CalcBioseqLength() : CBioseq_Info
x_CalcColorStep() : CRgbaColorTable
x_CalcConfigValue() : CNcbiTestApplication
x_CalcCoords() : CNCBitMaskBase< num_elems >
x_CalcDivergenceMatrix() : CGuideTreeCalc
x_CalcEmptyGrade() : CNCMMBlocksSet, CNCMMSlab
x_CalcFeatHistRecursive() : CSGCalcFeatHistJob
x_CalcFingerPrint64() : CNWAligner
x_CalcIntervals() : CSGFeatureJob, CRnaCdsGroup, CAlignGlyph, CLayoutSwitchPoints, CLayoutSeqMap, CLayoutPWAlign, CLayoutObject, CLayoutFeat
x_CalcLength() : CSeqMap_CI_SegmentInfo
x_CalcMaxLabelSize() : CGlDrawScale
x_CalcMemoryMode() : CNCMMCentral
x_CalcMinPanelSize() : CRunToolDlg
x_CalcNbins() : CDensityMap< CntType >
x_CalcRunLength() : CDenMapRunIterator< CntType >
x_CalcTextPos() : CTextSelectItem
x_Calculate() : CPhyloSlantedCladogram, CPhyloRectCladogram, CPhyloRadial, CPhyloForce
x_CalculateAlignmentScores() : CScoringJob
x_CalculateConsensusScores() : CColumnScoringMethod
x_CalculateEncoding() : CWString
x_CalculateHintRect() : CDockContainer
x_CalculateHitsRange() : CHitMatrixDataSource
x_CalculateLayout() : CMapControl
x_CalculateMasks() : CBlastQuerySourceOM
x_CalculateMinSizes() : CSplitter
x_CalculateNonConsensusScores() : CColumnScoringMethod
x_CalculateNumberOfSlices() : CCachedSeqDataForRemote
x_CalculateOffsetList() : CSeqTextPane
x_CalculatePosLabelsStep() : CRuler
x_CalculateRealTextWidth() : CMapItem
x_CalculateScore : CAlnMixSegments, CAlnMix, CAlnMixMerger, CAlnMixMatches
x_CalculateSequenceScores() : CScoringJob
x_CalculateTotalRangeCheckId() : CSeq_loc
x_CalcWindowStats() : CCpGIslands
x_CallUserFuncs() : CNcbiTestApplication
x_CanAddImmediateTask() : CThreadPool_Impl
x_CanBeSavedAsLink() : CProjectService
x_CancelAllTasks_OnThread() : CSchedulerEngine
x_CancelExecutingTasks() : CThreadPool_Impl
x_CancelJob() : CRemoteAppDispatcher, CFeatureGraph
x_CancelQueuedTasks() : CThreadPool_Impl
x_CancelSearch() : CDataMiningPanel
x_CancelSelRectMode() : CHitMatrixGraph
x_CancelTask_OnThread() : CSchedulerEngine
x_CanCombine() : CHitClustering
x_CanCommitRollBack() : CScopeTransaction_Impl, IScopeTransaction_Impl
x_CanCreateRowBased() : CHitMatrixDataSource
x_CanGetDescr() : CBioseq_set_Info, CBioseq_Info, CBioseq_Base_Info
x_CanInsertRng() : CMergedPairwiseAln
x_CanOptimize() : CAlignGlyph
x_CanPasteProjectFolder() : CAppExplorerService
x_CanRenderSeq() : CAlnVecRow
x_CanResolve() : CSeqMap_CI
x_CanShowPopup() : CMessageSlot
x_CanUpdateCutOrCopy() : CProjectTreePanel, CAppExplorerCmdHandler
x_CaptureMouse() : CMouseZoomHandler
x_CategorizeDBs() : CNetBLASTUIDataSource
x_CDShasLowQualityException() : CDeflineGenerator
x_ChangeCitationQualToCitationPub() : CCleanup_imp
x_ChangeCitSub() : CCleanup_imp
x_ChangeCurrentStatus() : CBDB_Volumes
x_ChangeGBDiv() : CCleanup_imp
x_ChangeGenBankBlocks() : CCleanup_imp
x_ChangeGroupStatus() : CQueue
x_ChangeImpFeatToCDS() : CCleanup_imp
x_ChangeImpFeatToProt() : CCleanup_imp
x_ChangeInsertionSeqToMobileElement() : CCleanup_imp
x_ChangeNoteQualToComment() : CCleanup_imp
x_ChangeSwitchPoint() : CSeqGraphicPane
x_ChangeToMix() : CSeq_loc
x_ChangeToPackedInt() : CSeq_loc
x_ChangeToPackedPnt() : CSeq_loc
x_ChangeTransposonToMobileElement() : CCleanup_imp
x_Check() : CSeq_id_Other_Tree, CSeq_id_Named_annot_track_Tree, CSeq_id_Gpipe_Tree, CSeq_id_Tpd_Tree, CSeq_id_Tpe_Tree, CSeq_id_Tpg_Tree, CSeq_id_Prf_Tree, CSeq_id_Swissprot_Tree, CSeq_id_Pir_Tree, CSeq_id_GB_Tree, CSeq_id_Textseq_Tree, CSeq_id_Gi_Tree, CSeq_id_Gibbmt_Tree, CSeq_id_Gibbsq_Tree, CSeq_id_int_Tree, CSeq_id_not_set_Tree, CDiagFilter, CSoapMessage, CScopeInfo_Base, CBlobStorage_NetCache
x_CheckAccess() : CNetScheduleHandler
x_CheckAdded() : CTSE_ScopeInfo
x_CheckAddr() : CDebugDumpViewer
x_CheckAdjusted() : CSeqDBMapStrategy
x_CheckArgs() : CQueryFunctionEQ
x_CheckAutoHelp() : CArgDescriptions
x_CheckBackward() : CSeqVector_CI
x_CheckCancelled() : CTextRetrieveJob
x_CheckChanges() : CSnpFilterUI
x_CheckCodingRegionEnds() : CCleanup_imp
x_CheckConfig() : CRemoteBlast
x_CheckConflictFlag() : CCleanup_imp
x_CheckConstructBuffers() : CBDB_File
x_CheckControls() : CwxAnnotConfigDlg
x_CheckDataStatus() : COpenViewlDlgTask
x_CheckDBInitialized() : CNCBlobStorage
x_CheckExecutionTimeout() : CQueue
x_CheckField() : CCgiCookies, CCgiCookie
x_CheckFlags() : IRegistry
x_CheckFlagsValidity() : CSQLITE_Connection
x_CheckForStructureLink() : CShowBlastDefline
x_CheckForward() : CSeqVector_CI
x_CheckGappedAlignmentResults() : CPhiblastTestFixture
x_CheckGenbankBlockTechKeywords() : CCleanup_imp
x_CheckGi() : CSeq_annot_SNP_Info
x_CheckGradeChange() : CNCMMSizePool
x_CheckHashContent() : CCacheHashedContent
x_CheckId() : CSeq_loc
x_CheckIncreasingBestEvalues() : CPhiblastTestFixture
x_CheckJobStatus() : CRemoteAppDispatcher, CGridCgiApplication
x_CheckLocation() : CDebugDumpViewer
x_CheckMemoryLimit() : CSplicedAligner, CBandAligner, CNWAligner, CMMAligner
x_CheckMolInfoConsistency() : CCleanup_imp
x_CheckNotValid() : CSeq_loc_CI
x_CheckOrFindOID() : CSeqDBImpl
x_CheckParameters() : CBandAligner
x_CheckReadOnly() : CNCBlobStorage
x_CheckResults() : CRemoteBlast
x_CheckSeqTypes() : CSeq_loc_Mapper_Base
x_CheckSequence() : CNWAligner
x_CheckSplitResults() : CPhiblastTestFixture
x_CheckStatus() : CCgiSession_NetCache
x_CheckStatusChange() : CBDB_Volumes
x_CheckStopped() : CNCBlobStorage
x_CheckStopPurge() : CQueueDataBase
x_CheckTimestampExpired() : CDBAPI_Cache
x_CheckTimeStampExpired() : CBDB_Cache
x_CheckToken() : CAffinityDict
x_CheckVersion() : CNetScheduleHandler
x_CheckVersions() : CSeqDBVol
x_CheckWhich() : CSeq_entry_Info
x_ChildLockAction() : CCompoundRWRegistry, CTwoLayerRegistry, CCompoundRegistry, IRegistry, CEnvironmentRegistry
x_Choice() : CRemapClient_Base, CMLAClient_Base, CID2Client_Base, CID1Client_Base, CEntrez2Client_Base, CBlast4Client_Base, CXmlRetrieveJob, CGBenchService_Base
x_ChoiceMember() : CXmlRetrieveJob
x_ChooseFontForSize() : CSeqTextPane
x_ChooseTickSpace() : CRuler
x_Clamp() : CRgbaColor, CVisibleRangeEvent, CVisibleRange
x_Class() : CXmlRetrieveJob
x_ClassMembers() : CXmlRetrieveJob
x_CleanData() : CReferenceItem
x_CleanGenbankBlockStrings() : CCleanup_imp
x_CleanOrgNameStrings() : CCleanup_imp
x_CleanOrphantBlobs() : CDBAPI_Cache
x_CleanParamMap() : CQueueDataBase
x_CleanPoolSpace() : CNCMMChunksPool
x_CleanQuals() : CFeatureItem
x_CleanRangeMaps() : SIdAnnotObjs
x_CleanStateSpans() : CNCMessageHandler
x_CleanTimeLine() : CRequestRateControl
x_Cleanup() : CConn_Streambuf, CElementaryMatching, CSafeStaticPtr_Base, CAutoInitPtr_Base
x_CleanUp() : CSampleEditSaver, CString2Args
x_Cleanup_AlignVec() : CAlignCleanup
x_Cleanup_AnchoredAln() : CAlignCleanup
x_CleanupConsSplice() : CCleanup_imp
x_CleanupExcept_text() : CCleanup_imp
x_CleanupRna() : CCleanup_imp
x_CleanupRptUnit() : CCleanup_imp
x_CleanUpTaxName() : CAutoDefModifierCombo
x_CleanupUnusedEntries() : CDataSource
x_CleanupUserString() : CCleanup_imp
x_CleanVolumes() : CElementaryMatching
x_Clear() : CGetFeature, CAnnot_Collector, CSplitter, CSelectionControl, CSnpFilterUI, CObjectListTableModel, CObjectList, CHitMatrixDSBuilder, CHitMatrixDataSource, CAlnSpanVertModel, CSelListModelImpl< Item >, CAlignedFeatureGraph, CAlnMultiDSBuilder, CClipboard, CNcbiRegistry, CCompoundRWRegistry, CTwoLayerRegistry, CMemoryRegistry, IRWRegistry, CEnvironmentRegistry, CNetScheduleKeys, COStreamHelper
x_Clear_NonBlocking() : CSyncQueue< Type, Container >
x_ClearAnnotCache() : CScope_Impl
x_ClearAnnotTypesSet() : SAnnotSelector
x_ClearBit() : CSeqDBBitVector
x_ClearBitRange() : CSeqDBOIDList
x_ClearCache() : CSeqVector_CI
x_ClearCacheOnEdit() : CScope_Impl
x_ClearCacheOnNewAnnot() : CScope_Impl
x_ClearCacheOnNewData() : CScope_Impl
x_ClearCacheOnNewDS() : CScope_Impl
x_ClearCacheOnRemoveAnnot() : CScope_Impl
x_ClearCacheOnRemoveData() : CScope_Impl
x_ClearClipboardData() : CAppExplorerService
x_ClearContent() : CLayoutTrack, CGlyphContainer
x_ClearDatabases() : CNetBLASTUIDataSource
x_ClearHandles() : CSparseMultiDataSource, CAlnVecMultiDataSource
x_ClearHaveSequence() : CWriteDB_Impl
x_ClearHits() : CHitMatrixDataSource
x_ClearItems() : CSelListModelImpl< Item >, CAlnMultiModel
x_ClearRecent() : CSeqDBAtlas
x_ClearScoreToParamsMap() : CHitMatrixWidget
x_ClearStatusBar() : CGBenchGUI
x_Clicked() : CFeatureTypesBrowser
x_ClipPosByRange() : CTextSelHandler, CLinearSelHandler, CAlignMarkHandler
x_Clone() : CInvalidChoiceSelection, CBlobStateException, CDB_MultiEx, CDB_TruncateEx, CDB_ClientEx, CDB_TimeoutEx, CDB_DeadlockEx, CDB_SQLEx, CDB_RPCEx, CDB_DSEx, CParseTemplException< TBase >, CErrnoTemplException< TBase >, CErrnoTemplExceptionEx< TBase, PErrCode, PErrStr >, CCoreException, CException
x_Close() : CTar, CODBCContext, CDBLibContext, CTL_RPCCmd, CTLibContext, CBDB_RawFile, CBDB_Cache, CMemoryFileMap
x_CloseAllViews() : CGBenchGUI, CFrameworkDemoGUI
x_CloseBlob() : CSQLITE_Blob
x_CloseClient() : CWindowManager
x_CloseConnection() : CNCMessageHandler
x_CloseDataSources() : CUIDataSourceService
x_CloseGap() : CCustomizedFastaReader, CFastaReader
x_CloseMask() : CMaskFromFasta, CFastaReader
x_CloseWorkspace() : CGBenchGUI, CProjectTask
x_ClrAmb() : CSeqDBIdxFile
x_ClrHdr() : CSeqDBIdxFile
x_ClrSeq() : CSeqDBIdxFile
x_CmdAlloc() : CTL_Connection
x_CmpSequenceData() : CSplitQueryTestFixture
x_CodeToFaultcodeEnum() : CSoapFault
x_CollapseSubtrees() : CGuideTree
x_CollectAllTests() : CNcbiTestApplication
x_CollectAllTo() : CNCMMStats
x_CollectBioseqs() : CDataSource
x_CollectBioSources() : CFlatGatherer
x_CollectBioSourcesOnBioseq() : CFlatGatherer
x_CollectNeeded() : CFeatTree
x_CollectSegments() : CPrimaryItem
x_CollectSourceDescriptors() : CFlatGatherer
x_CollectSourceFeatures() : CFlatGatherer
x_CollectTo() : CNCServerStat
x_ColorspaceUpdatePenalty() : oligofar::CAligner
x_ColorToUserField() : CSGConfigUtils
x_CombineLocs() : CMaskedRangeSet
x_CombineSplitQual() : CCleanup_imp
x_CombineWith() : CRangeCollection< Position >
x_CommentLine() : CWig2tableApplication
x_Common() : CCleanup_imp
x_CommonNodeSearch() : CPhyloTreeDataSource
x_CompactBuffer() : CBufferedSockReaderWriter
x_Compare() : CPackString::SNode, CCompareSeq_locs
x_CompareAdjacentSegTypes() : CAlnMap
x_CompareChainScores() : CAlnMixSequences, CAlnMixMatches
x_CompareCompLists() : CCommonComponentScorer
x_CompareFourIntRecords() : CGeneFileWriter
x_CompareInts() : CCompareSeq_locs
x_CompareOneAlign() : CSeqAlignCmp
x_CompareScores() : CAlnMixSequences, CAlnMixMatches
x_CompareSequenceData() : CSequenceDataTester
x_CompareStrings() : CValidError_bioseq
x_CompareTwoIntRecords() : CGeneFileWriter
x_Compartment2SeqAlign() : CSplignFormatter
x_CompartPair() : CElementaryMatching
x_CompartVolume() : CElementaryMatching
x_ComplementData() : CBlastSeqVectorFromCSeq_data
x_CompleteInsertion() : CSelListModelImpl< Item >, CAlnMultiModel
x_CompressFile() : CCompression
x_ComputeBlastTypePair() : CBlastFormat
x_ComputeChunkRanges() : CQuerySplitter
x_ComputeClusterTrees() : CMultiAligner
x_ComputeContextOffsets_NonTranslatedQueries() : CQuerySplitter
x_ComputeContextOffsets_TranslatedQueries() : CQuerySplitter
x_ComputeContextOffsetsForChunks() : CQuerySplitter
x_ComputeExpTime() : CBDB_Cache
x_ComputeFilters() : CSeqDBOIDList
x_ComputeHash() : CWriteDB_Impl
x_ComputeInformativeLength() : oligofar::CQuery
x_ComputeMasks() : CSeqDBAliasFile
x_ComputeOverlapValues() : CCompareSeq_locs
x_ComputePackOpt() : CBDB_BufferManager
x_ComputeProfileRangeAlignment() : CMultiAligner
x_ComputePssmForNextIteration() : CPsiBlastTestFixture
x_ComputeQueryChunkBounds() : CSplitQueryTestFixture
x_ComputeQueryContextsForChunks() : CQuerySplitter
x_ComputeQueryIndicesForChunks() : CQuerySplitter
x_ComputeSeqLength() : CWriteDB_Impl
x_ComputeSerializationSize() : CBDB_ExtBlobMap
x_ComputeTracebak() : CTracebackTestFixture
x_ComputeTree() : CGuideTreeCalc, CMultiAligner
x_ConfigCShowBlastDefline() : CBlastFormat
x_ConfigUIToolRegistry() : CGBenchApplication
x_ConfigureBottomRuler() : CSeqTextPane
x_ConfigureSubtracks() : CFeaturePanel
x_ConfigureSubtracks_Recursive() : CFeaturePanel
x_ConfigureTracks() : CFeaturePanel
x_ConnDescription() : CId2ReaderBase, CId2Reader, CId1Reader
x_Connect() : CRPCClient< TRequest, TReply >, CRemapClient, CMLAClient_Base, CID2Client_Base, CID1Client_Base, CGBenchService, CODBC_Connection, CSysLog
x_ConnectAtSlot() : CReader, CId2Reader, CId1Reader, CCacheReader
x_ConnectDocument() : CProjectService
x_ConnectURL() : CRPCClient< TRequest, TReply >
x_ConsolidateGaps() : CAlnMixSegments
x_ConsolidateListOfMasks() : CMaskWriterBlastDbMaskInfo
x_Consortium() : CGenbankFormatter
x_Construct() : oligofar::CScoringFactory
x_ConstructDataBuf() : CBDB_File
x_ConstructKeyBuf() : CBDB_File
x_Container() : CXmlRetrieveJob
x_Contains() : CRangeCollection< Position >
x_ContextInChunkToQueryIndex() : CQueryDataPerChunk
x_Convert() : oligofar::CScoreTbl, CGBankLoadingJob
x_Convert2() : oligofar::CQueryHash
x_Convert2naExpandTo2na() : CSeqConvert_imp
x_Convert2naExpandTo4na() : CSeqConvert_imp
x_Convert2naExpandTo8na() : CSeqConvert_imp
x_Convert2naExpandToIupacna() : CSeqConvert_imp
x_Convert2naTo2naExpand() : CSeqConvert_imp
x_Convert2naTo4na() : CSeqConvert_imp
x_Convert2naTo8na() : CSeqConvert_imp
x_Convert2naToIupacna() : CSeqConvert_imp
x_Convert4() : oligofar::CQueryHash
x_Convert4ag() : oligofar::CQueryHash
x_Convert4naTo2na() : CSeqConvert_imp
x_Convert4naTo2naExpand() : CSeqConvert_imp
x_Convert4naTo8na() : CSeqConvert_imp
x_Convert4naToIupacna() : CSeqConvert_imp
x_Convert4tc() : oligofar::CQueryHash
x_Convert8naTo2na() : CSeqConvert_imp
x_Convert8naTo2naExpand() : CSeqConvert_imp
x_Convert8naTo4na() : CSeqConvert_imp
x_Convert8naToIupacna() : CSeqConvert_imp
x_ConvertAlign() : CSeq_align_Mapper_Base
x_ConvertAlignCvt() : CSeq_align_Mapper
x_ConvertAmbig() : CSeqportUtil_implementation
x_ConvertContig() : CPhrapReader
x_ConvertEaaToIupacaa() : CSeqConvert_imp
x_ConvertEaaToStdaa() : CSeqConvert_imp
x_ConvertFullLenFeatureToDescriptor() : CCleanup_imp
x_ConvertFullLenPubFeatureToDescriptor() : CCleanup_imp
x_ConvertIupacaaToEaa() : CSeqConvert_imp
x_ConvertIupacaaToStdaa() : CSeqConvert_imp
x_ConvertIupacnaTo2na() : CSeqConvert_imp
x_ConvertIupacnaTo2naExpand() : CSeqConvert_imp
x_ConvertIupacnaTo4na() : CSeqConvert_imp
x_ConvertIupacnaTo8na() : CSeqConvert_imp
x_ConvertIupacnaToIupacna() : CSeqConvert_imp
x_ConvertOrgDescToSourceDescriptor() : CCleanup_imp
x_ConvertOrgFeatToSource() : CCleanup_imp
x_ConvertRow() : CSeq_align_Mapper_Base
x_ConvertRowCvt() : CSeq_align_Mapper
x_ConvertSegment() : CSeq_align_Mapper_Base
x_ConvertSegmentCvt() : CSeq_align_Mapper
x_ConvertStdaaToEaa() : CSeqConvert_imp
x_ConvertStdaaToIupacaa() : CSeqConvert_imp
x_ConvertToNcRNA() : CCleanup_imp
x_ConvertUpstream() : CPhyloTreeDataSource
x_ConvertUserObjectToAnticodon() : CCleanup_imp
x_ConvToDstDisc() : CSeq_align_Mapper_Base
x_CookColumns() : CWriteDB_Impl
x_CookData() : CWriteDB_Impl
x_CookHeader() : CWriteDB_Impl
x_CookIds() : CWriteDB_Impl
x_CookSequence() : CWriteDB_Impl
x_Copy() : CSeqDB_BitSet, CNcbiTable< TValue, TRow, TColumn >, CAnyContentObject, CBlastDbBlob
x_Copy2Pending() : CCompartmentAccessor< THit >
x_Copy_CBlastDatabaseOptions() : CBlastOptionsLocal
x_Copy_CBlastEffectiveLengthsOptions() : CBlastOptionsLocal
x_Copy_CBlastExtensionOptions() : CBlastOptionsLocal
x_Copy_CBlastHitSavingOptions() : CBlastOptionsLocal
x_Copy_CBlastInitialWordOptions() : CBlastOptionsLocal
x_Copy_CBlastScoringOptions() : CBlastOptionsLocal
x_Copy_CLookupTableOptions() : CBlastOptionsLocal
x_Copy_CPSIBlastOptions() : CBlastOptionsLocal
x_Copy_CQuerySetUpOptions() : CBlastOptionsLocal
x_CopyBits() : CSeqDB_BitSet
x_CopyCdregionToRNA() : CPromote
x_CopyCDSFromCDNA() : CFlatGatherer
x_CopyFrom() : CAppJobProgress
x_CopyLocalFile() : CRemoteAppRequestMB_Impl
x_CopyQueryToMsa() : CPsiBlastInputData, CPsiBlastInputClustalW
x_CorrectScale() : CGlPane
x_CorruptedDatabase() : CNCBlob
x_Count() : oligofar::CBitHacks
x_CountAdjacentNs() : CValidError_bioseq
x_CountAndSelectQualifyingAlignments() : CPsiBlastInputData
x_CountBits() : CValidError_align
x_CountMismatches() : oligofar::CGuideFile
x_CountNodes() : CTaxTreeBrowser
x_Create() : CWGLDemoApp, CPrintOptionsDlg, CSaveImageDlg, CPrintDlg, CBDB_RawFile, CMemoryFileMap
x_CreateAlign() : CPhrap_Contig
x_CreateAlignAll() : CPhrap_Contig
x_CreateAlignOptimized() : CPhrap_Contig
x_CreateAlignPairs() : CPhrap_Contig
x_CreateAlnStarts() : CAlnMap
x_CreateAlnVecDataSource() : CAlnMultiDSBuilder
x_CreateArg() : CArgDescriptions
x_CreateBioseq() : CBlastInputReader
x_CreateBioseqInfo() : CTSE_ScopeInfo
x_CreateBlastQueries() : CMultiAligner
x_CreateBlobInCache() : CNCBlobStorage
x_CreateButton() : CDockPanel
x_CreateColorTable() : CColorTableMethod
x_CreateContainerWindow() : CDockContainer
x_CreateContentXForm() : CPageHandler
x_CreateContextMenuBackbone() : CProjectView
x_CreateControls() : CDockPanel, CDockContainer, CGlWidgetBase, CCrossAlnWidget
x_CreateDataSource() : CHitMatrixDSBuilder
x_CreateDB() : CBDB_RawFile
x_CreateDefaultViews() : CFrameworkDemoGUI
x_CreateDenseg() : CAlnMixMerger
x_CreateDesc() : CPhrapReader, CPhrap_Contig, CPhrap_Read
x_CreateDisplayStyle() : CAlnMultiModel
x_CreateDocuments() : CProjectService
x_CreateDriver() : CGBDataLoader
x_CreateEditJob() : CAutodefToolManager
x_CreateEventHandler() : CProjectView
x_CreateExtensionPoint() : CExtensionRegistry
x_CreateFeat() : CPhrap_Contig, CPhrap_Read
x_CreateFeatHist() : CSGFeatureJob
x_CreateFeature() : CDataMiningPanel
x_CreateFeature1() : CSGFeatureJob
x_CreateFeature2() : CGeneModelFeatJob, CSGFeatureJob
x_CreateFeatures() : CSGFeatureJob
x_CreateFileArtProvider() : CWorkbench
x_CreateFlagBoxes() : CMergeAlignmentsParamsPanel
x_CreateFlatFileGenerator() : CAsn2FlatApp, CAsn2FastaApp
x_CreateFloatingToolBars() : CGBenchGUI, CFrameworkDemoGUI
x_CreateFonts() : CPhyloTreeLabel
x_CreateFrameAndContainer() : CDockManager
x_CreateGaugeIfNeeded() : CMessageSlot
x_CreateGeneFeatures() : CGFFReader
x_CreateGeneModels() : CGeneModelFeatJob
x_CreateGraph() : CPhrap_Contig, CFeatureLoadingJob
x_CreateGUI() : CDemoApp, CDemoAlignScorePropsApp, CDemoApp, CDemoTableCtrlApp, CTestTreeApp, CSeqTextDemoApp, CSeqGraphicDemoApp, CDemoApp, CPhyloTreeDemoApp, CDemoFeatTableApp, CHitMatrixDemoApp, CDemoApp, CDemoThemeDlgApp, CDemoAlignTableApp, CAlignMultipleDemoApp, CCrossAlnDemoApp, CFrameworkDemoApp, CGBenchFeedbackAgent, CGBenchApp, CwxNCBIApp
x_CreateHandles() : CSparseMultiDataSource, CAlnVecMultiDataSource
x_CreateHeaderFooter() : CPageHandler
x_CreateHistogram() : CHitMatrixRenderer
x_CreateHit() : CHitMatrixDataSource
x_CreateHit_Denseg() : CHitMatrixDataSource
x_CreateHit_Std() : CHitMatrixDataSource
x_CreateHits() : CHitMatrixDataSource
x_CreateHits_Diagonal() : CHitMatrixDataSource
x_CreateIds() : CHitMatrixDataSource
x_CreateIndex() : CElementaryMatching
x_CreateInfoItemIfNeeded() : CTypeInfo
x_CreateItems() : CBLAST_DB_Dialog, CProjectServiceTestJob
x_CreateIterator() : CSeqVector
x_CreateJob() : CSequenceSearchTool, COrfSearchTool, CFeatureSearchTool, CEntrezSearchTool, CCpgSearchTool, CComponentSearchTool, CNetBLAST_DMSearchTool, CSearchToolBase
x_CreateLayout() : CPhyloTreeCGIApplication, CGuideTree, CLDBlockTrack, CHapmapTrack, CGapTrack, CBinsTrack
x_CreateLevelTrack() : CFeaturePanel
x_CreateLitRequest() : CEUtilsApp
x_CreateLoadingJob() : CCreateNeedlemanWunschToolManager, CAutodefToolManager, CWindowMaskerTool, CCleanupTool, CTreeBuilderTool, CSplignTool, CMergeAlignmentsToolManager, CGroupAlignmentsToolManager, CFindOverlapTool, CCreateGeneModelToolManager, CCleanupAlignmentsToolManager, CAlgoToolManagerBase
x_CreateLog() : CNetScheduleServer
x_CreateMainFrame() : CWorkbench
x_CreateMapRanges() : CFeatureGraph
x_CreateMatcher() : CDiagSyntaxParser
x_CreateMenuBarMenu() : CSnpTableView, CFeatTableView, CPhyTreeView, CMultiAlignView, CMPCrossAlignView, CDotMatrixView, CCrossAlignView, CAnnotCompareView, CAlignSpanView, CProjectViewBase
x_CreateMergedChain() : CNCMMReserve
x_CreateMessageSlotPanel() : CMessageSlotPopupWindow
x_CreateModel() : CAlnMultiWidget
x_CreateNavigationToolbar() : CProjectViewToolBatFactory
x_CreateNCClient() : CRemoteAppDispatcher
x_CreateNewChain() : CNCMMReserve
x_CreateNewClient() : CNetScheduleControl
x_CreateNewDBPart() : CNCBlobStorage
x_CreateNewDBStructure() : CNCBlobStorage
x_CreateNextItem() : CwxMainFrame
x_CreateNSClient() : CRemoteAppDispatcher
x_CreateOneProject() : CDataLoadingAppJob
x_CreateOptionsHandle() : CTblastxAppArgs, CTblastnAppArgs, CRPSTBlastnAppArgs, CRPSBlastAppArgs, CPsiBlastAppArgs, CBlastxAppArgs, CBlastpAppArgs, CBlastnAppArgs, CBlastAppArgs
x_CreateOptionsPanelIfNeeded() : CBLASTToolManagerBase
x_CreateOusputSeqaligns() : CSeqAlignFilter
x_CreateOverflowReader() : CBDB_Cache
x_CreatePage() : CPageHandler
x_CreatePageClipObject() : CPageHandler
x_CreatePageXForm() : CPageHandler
x_CreatePane() : CGlWidgetDemo, CSeqTextWidget, CSeqGraphicWidget, CPhyloTreeWidget, CHitMatrixWidget, CGlWidgetBase, CAlnMultiWidget, CCrossAlnWidget
x_CreateParamsPanelIfNeeded() : CCreateNeedlemanWunschToolManager, CAutodefToolManager, CWindowMaskerTool, CCleanupTool, CTreeBuilderTool, CSplignTool, CMergeAlignmentsToolManager, CGroupAlignmentsToolManager, CFindOverlapTool, CCreateGeneModelToolManager, CCleanupAlignmentsToolManager, CBLASTToolManagerBase, CAlgoToolManagerBase
x_CreatePatternQueries() : CMultiAligner
x_CreatePopupMenu() : CSeqGraphicWidget, CAlnMultiWidget
x_CreatePrintersMarks() : CPageHandler
x_CreateProjectItemFromBlastResult() : CNetBlastLoadingJob
x_CreateProjectItemItem() : CAppExplorerService
x_CreateProjectItems() : CGwasLoadJob, CWindowMaskerJob, CCleanupJob, CTreeBuilderJob, CSplignJob, CFindOverlapJob, CCreateNeedlemanWunschJob, CWigLoadJob, CGenBankLoadingJob, CFastaLoadJob, CBedLoadJob, CAgpLoadJob, CPhyLoadJob, CMergeAlignmentsJob, CGroupAlignmentsJob, CCreateGeneModelJob, CCleanupAlignmentsJob, CBLASTSeqToolJob, CNetBlastLoadingJob, CDataLoadingAppJob, CGBankLoadingJob, CAsnLoadJob
x_CreateProjectPanelIfNeeded() : CAutodefToolManager, CBLASTToolManagerBase, CAlgoToolManagerBase
x_CreateProjectViewTreeItem() : CAppExplorerService
x_CreatePssmFromFreqRatios() : CPssmEngine
x_CreatePssmFromMsa() : CPssmEngine
x_CreatePssmScoresFromFrequencyRatios() : CPsiBlastImpl
x_CreateReader() : CGBDataLoader
x_CreateReaders() : CGBDataLoader
x_CreateReadGroup() : CQueue
x_CreateRemapData() : CElementaryMatching
x_CreateRemoteBlastIfNeeded() : CNetBlastJobDescriptor
x_CreateRow() : CAlnMultiModel
x_CreateScope() : CEditBioseqSampleApp
x_CreateScoreTable() : CMatrixScoringMethod, CColumnScoringMethod
x_CreateScoringMethodsMenu() : CAlnMultiWidget
x_CreateSelectionToolbar() : CProjectViewToolBatFactory
x_CreateSeparateProjects() : CDataLoadingAppJob
x_CreateSeq_align() : CPhrap_Contig
x_CreateSeq_feat() : SSNP_Info
x_CreateSeqAnnots() : CAnalysisFileLoader
x_CreateSeqFtable() : CAnalysisFileLoader
x_CreateSeqGraph() : CAnalysisFileLoader
x_CreateSeqRequest() : CEUtilsApp
x_CreateSparseDataSource() : CAlnMultiDSBuilder
x_CreateSSeqLoc() : CBlastSampleApplication
x_CreateStateChange() : CObservable, CSelectionService, CProjectService
x_CreateStorage() : CNSInfoCollector
x_CreateStorages() : CNetCacheServer
x_CreateStream() : CNSJobInfo
x_CreateString() : CSnpBitfield2, CSnpBitfield1_2, CSnpBitfield
x_CreateSubjectBioseq() : CBlastFormat
x_CreateSubsetAlign() : CGuideTreeCalc
x_CreateTaxRequest() : CEUtilsApp
x_CreateToolItems() : CRunToolDlg
x_CreateTreeItems() : CBLAST_DB_Dialog
x_CreateUID() : CDiagContext
x_CreateUniqueStr() : CReferenceItem
x_CreateValidAlign() : CGuideTreeCalc
x_CreateViewToolBar() : CGBenchGUI, CFrameworkDemoGUI
x_CreateWDir() : IRemoteAppRequest_Impl
x_CreateWidgets() : CFeatureSearchForm, CComponentSearchForm
x_CreateWindow() : CSplineDemoUI, CGl3dDemoUI, CFontDemoUI, CAnnotCompareFilterDlg, CRenameDlg, CTrackCreatorUI, CSnpFilterUI, CSnpFilterListDialog, CSeqTextDlg, CSeqMarkerSetDlg, CHairlineOptionsDlg, CAnnotConfigDlg, CFeatureTypesDlg, CPhyloTreeFilterDlg, CFilterDialog, CSpanTableSettingsDialog
x_CreateWriter() : CGBDataLoader
x_CreateWriters() : CGBDataLoader
x_CutOrCopy() : CProjectTreePanel, CAppExplorerCmdHandler
x_DB_CPut() : CBDB_RawFile
x_DB_Fetch() : CBDB_RawFile
x_DB_Put() : CBDB_RawFile
x_DBC_Fetch() : CBDB_RawFile
x_DbCleanup() : CCleanup_imp
x_DbToIndexName() : CSeqDBAliasSets
x_DDX_Context() : CSeqLocFormBase
x_Deallocate() : CSimpleBufferT< T, ResizeStrategy >
x_DeallocateBlock() : CNCMMSizePool
x_DebugValid() : CSelectionControl
x_DeclareDead() : CEventHandler
x_Decode() : CAnyContentObject
x_DecodeGeneticCode() : COrfSearchJob
x_DecompressBuffer() : CNlmZipReader
x_DecompressFile() : CCompression
x_DecorateProjectItem() : CAppExplorerService
x_DecSeg() : CSeqVector_CI
x_DeduceTarget() : CAsn2FlatApp, CAsn2FastaApp
x_DefaultByteLimit() : CWriteDB_File
x_DefaultScheme() : CPhyloTreeScheme
x_DefaultTimeout() : CRemoteBlast
x_DeflineSeqIdWrite() : CDeflineProcess
x_DeleteAllFilenames() : CMultiFileInput
x_DeleteAllItems() : CSelectionControl
x_DeleteAllJobs() : CAnnotCompareDS
x_DeleteAllLevels() : CTableSortMultiChoice
x_DeleteBlobFromCache() : CNCBlobStorage
x_DeleteDBPart() : CNCBlobStorage
x_DeleteFieldToShow() : CBlastTabularInfo
x_DeleteFilename() : CMultiFileInput
x_DeleteItem() : CSelectionControl
x_DeleteItems() : CProjectServiceTestJob
x_DeleteJob() : CScoreCache, CSparseMultiDataSource, CAlnVecMultiDataSource
x_DeleteLevel() : CTableSortMultiChoice
x_DeleteRow() : CColorPanel, CLocationListCtrl
x_DeleteScoringJob() : CSGAlignmentDS
x_DeleteSite() : CGuiRegistry
x_DeleteTlsData() : CTlsBase
x_DelimitedRead() : CCgiEntryReaderContext
x_DensegLength() : CContigAssembly
x_Deprecated() : CSplitter
x_DeregisterIcon() : CLayoutTrack
x_DescComments() : CFlatGatherer
x_DescentToChilds() : CPhyloTreeDataSource
x_DescribeClones() : CDeflineGenerator
x_Deserialize() : CBlastTabular
x_DeserializeBitVector() : CNetScheduleHandler
x_Destroy() : CWGLDemoApp, CTrackingEnvHolder, CTlsBase
x_DestroyCache() : CSeqVector_CI
x_DestroyEmptyLayout() : CDockContainer
x_DestroyFonts() : CPhyloTreeLabel
x_DestroyFrameAndContainer() : CDockManager
x_DestroyGauge() : CMessageSlot
x_DestroyGraphs() : CHitMatrixRenderer
x_DestroyGUI() : CFrameworkDemoApp, CGBenchApp, CwxNCBIApp
x_DestroyMainFrame() : CWorkbench
x_DestroyNode() : CDockContainer
x_Detach() : CBioseq_set_EditHandle, CBioseq_EditHandle
x_DetachAllViews() : CGBDocument
x_DetachAnnot() : CBioseq_Base_Info
x_DetachContents() : CSeq_entry_Info
x_DetachDS() : CTSE_ScopeInfo
x_DetachEntry() : CBioseq_set_Info
x_DetachFromFiles() : CBDB_Transaction
x_DetachFromOM() : CScope_Impl
x_DetachFromPool() : CThreadPool_Controller
x_DetachFromProject() : CProjectViewBase
x_DetachObject() : CTSE_Info_Object
x_DetachProjectItem() : CProjectPrx
x_DetachProjectItems() : CProjectPrx
x_DetachTSE() : CScopeInfo_Base, CBioseq_ScopeInfo
x_DetachView() : CGBDocument
x_DetectFormatVersion() : CPhrapReader
x_Diff() : CDiagRangeCollection
x_DiffChar() : CSeqDBIsam
x_DiffCharLease() : CSeqDBIsam
x_DiffSample() : CSeqDBIsam
x_DiffSecond() : CDiagRangeCollection
x_DimDisplay() : CSeqGraphicRenderer
x_DirExists() : CMsvcSite
x_DirtyAnnotIndex() : CTSE_Info_Object
x_DisableAnnotIndexWhenLoaded() : CTSE_Chunk_Info
x_Disconnect() : CRPCClient< TRequest, TReply >, CMLAClient_Base, CID1Client_Base
x_DisconnectAtSlot() : CReader, CId2Reader, CId1Reader, CCacheReader
x_DisconnectDocument() : CProjectService
x_DisconnectNodes() : CDockLayoutTree
x_DispatchEventToHandler() : CGlWidgetPane
x_DisplayAlnvec() : CDisplaySeqalign
x_DisplayAlnvecInfo() : CDisplaySeqalign
x_DisplayDefline() : CShowBlastDefline
x_DisplayDeflines() : CBlastFormat
x_DisplayDeflineTable() : CShowBlastDefline
x_DisplayMaster() : CAlnGraphic
x_DistributeEvenly() : CSplitter
x_Divide() : CRegexpUtil
x_DoAddToWorkbench() : CViewManagerService
x_DoAlloc() : CNCMMCentral
x_DoBackgroundWork() : CNCBlobStorage, CNCMMCentral, CNCFileSystem
x_DoBackTrace() : CSplicedAligner32, CSplicedAligner16, CBandAligner, CNWAligner
x_DoCallMmap() : CNCMMCentral
x_DoChooseNewWorkspaceName() : CProjectTask
x_DockPanelForClient() : CDockContainer
x_DocLayout() : CPdf
x_DoCloseFile() : CNCFileSystem
x_DoCloseWorkspace() : CProjectTask
x_DoCmd_Alive() : CNCMessageHandler
x_DoCmd_Get() : CNCMessageHandler
x_DoCmd_GetConfig() : CNCMessageHandler
x_DoCmd_GetOwner() : CNCMessageHandler
x_DoCmd_GetServerStats() : CNCMessageHandler
x_DoCmd_GetSize() : CNCMessageHandler
x_DoCmd_HasBlob() : CNCMessageHandler
x_DoCmd_Health() : CNCMessageHandler
x_DoCmd_IC_GetAccessTime() : CNCMessageHandler
x_DoCmd_IC_GetBlobsTTL() : CNCMessageHandler
x_DoCmd_IC_GetSize() : CNCMessageHandler
x_DoCmd_IC_IsOpen() : CNCMessageHandler
x_DoCmd_IC_Store() : CNCMessageHandler
x_DoCmd_IC_StoreBlob() : CNCMessageHandler
x_DoCmd_IsLock() : CNCMessageHandler
x_DoCmd_Monitor() : CNCMessageHandler
x_DoCmd_NotImplemented() : CNCMessageHandler
x_DoCmd_OK() : CNCMessageHandler
x_DoCmd_Put2() : CNCMessageHandler
x_DoCmd_Put3() : CNCMessageHandler
x_DoCmd_Remove() : CNCMessageHandler
x_DoCmd_Remove2() : CNCMessageHandler
x_DoCmd_Shutdown() : CNCMessageHandler
x_DoCmd_Version() : CNCMessageHandler
x_DoCommand() : CNCMessageHandler
x_DoConversion() : COpenViewManager
x_DoDeepCopy() : CBlastOptionsLocal, CBlastOptionsRemote, CBlastOptions
x_DoDefaultActionOnSelected() : CMapControl
x_DoDestroy() : CBlastRPSAuxInfo
x_DoDialogShowSpecial() : CSnpTableView
x_DoDistributeEvenly() : CSplitter
x_DoDragSeparator() : CSplitter
x_DoEnsureProjectSaved() : CProjectTask
x_DoFills() : CDisplaySeqalign
x_DoFinish() : CScopeTransaction_Impl
x_DoLensZoom() : CSeqGraphicRenderer
x_DoMoveColumn() : CAlnMultiHeaderHandler
x_DoMultiple() : CAppHitFilter
x_DoMultipleSections() : CFlatGatherer
x_DoOpenWorkspace() : CProjectTask
x_DoPairwise() : CAppHitFilter
x_DoPromoteCdregion() : CPromote
x_DoPromotePub() : CPromote
x_DoPromoteRna() : CPromote
x_DoRemoveViewFromWorkbench() : CViewManagerService
x_DoResize() : CSplitter
x_DoSaveProjectAs() : CProjectTask
x_DoSaveUserSelected() : CProjectTask
x_DoSaveWorkspaceOnly() : CProjectTask
x_DoSearch() : CSequenceSearchJob, COrfSearchJob, CFeatureSearchJob, CEntrezSearchJob, CCpgSearchJob, CComponentSearchJob, CNetBLAST_DMSearchJob, CFeatureSearchJob, CSearchJobBase
x_DoSelection() : CSelectionVisitor
x_DoSingleSection() : CGFFGatherer, CGenbankGatherer, CFlatGatherer, CFtableGatherer, CFeatureGatherer, CEmblGatherer
x_DoSubmatrix() : CMMAligner
x_DoTransition() : CRunToolDlg, COpenViewDlg, COpenDlg
x_DoubleLock() : CSyncQueue< Type, Container >
x_DoUpdate() : CTSE_Info_Object, CTSE_Info, CSeq_annot_SNP_Info, CSeq_entry_Info, CSeq_annot_Info, CBioseq_set_Info, CBioseq_Info, CBioseq_Base_Info
x_DoUpdateRowLines() : CAlnMultiModel
x_DoUpdateRowPositions() : CAlnMultiModel
x_DoUpdateRowsOrder() : CAlnMultiModel
x_DoUpdateSeq_inst() : CSeqMap
x_DoWithExternalHits() : CCompartApp
x_DoWriteToFile() : CNCFileSystem
x_Draw() : CDummyGlyph, CVisRangeGlyph, CTranslationGlyph, CSwitchPointGlyph, CSeqGraphicRenderer, CSegmentGlyph, CSeqGlyph, CMatePairGlyph, CLayoutTrack, CLayoutGroup, CHistogramGlyph, CRnaCdsGroup, CGeneGroup, CFeaturePanel, CFeatGlyph, CCommentGlyph, CClonePlacementGlyph, CCdsGlyph, CAlignSmearGlyph, CAlignGlyph, CLDBlockGlyph, CGwasGlyph, CBinsGlyph
x_DrawBackground() : CMapItem, CGroupMapWidget::CGroupItem
x_DrawBorder() : CAlignGlyph
x_DrawBoundary() : CLayoutGroup
x_DrawButton() : CDockMarkerWindow
x_DrawCheckbox() : CSurveyBrowser
x_DrawClientElements() : CDockPanel
x_DrawColorLegendBackGround() : CLegendHandler
x_DrawCorner() : CPhyloRectCladogram
x_DrawCornerCropMarks() : CPageHandler
x_DrawCrossAlignment() : CCrossPanelIR
x_DrawCrossedPanel() : CCrossPanelIR
x_DrawFeatureBar() : CRnaCdsGroup, CFeatGlyph
x_DrawFocusRect() : CMapItem
x_DrawHairLine() : CFeaturePanel
x_DrawHorzLabels() : CAxisRenderer
x_DrawIntervalBreaks() : CSequenceTextGraph
x_DrawItem() : CMinPanelContainer
x_DrawItemsRange() : CMapControl
x_DrawLabel() : CFeatGlyph, CLDBlockLine
x_DrawLabels() : CRnaCdsGroup
x_DrawMarker() : CSeqMarkHandler, CMouseZoomHandler, CBookmarksHandler
x_DrawMultiAlign() : CAlignGlyph
x_DrawNumber() : CGradientPanel
x_DrawPanelLink() : CPageHandler
x_DrawPWAlign() : CAlignGlyph
x_DrawPWAlignElemSequence() : CAlignGlyph
x_DrawRecursive() : CGlTube< Curve >, CGlCurve< Curve >
x_DrawRuler() : CFeatGlyph
x_DrawSelectionArea() : CSelectionHelper
x_DrawSeparationLines() : CMapControl
x_DrawSeparator() : CSplitter, CMapItem, CDockSplitter
x_DrawSequence() : CTranslationGlyph, CCrossPanelIR
x_DrawText() : CMapItem
x_DrawTicks() : CMouseZoomHandler
x_DrawTree() : CPhyloSlantedCladogram, CPhyloRectCladogram, CPhyloRadial, CPhyloForce
x_DrawTriangle() : CPageHandler
x_DrawVariations() : CSequenceTextGraph
x_Drop() : CTSE_Lock
x_drop_final : AllCutoffScores
x_drop_gap : BlastRawCutoffs
x_drop_gap_final : BlastRawCutoffs
x_drop_gapped : AllCutoffScores
x_drop_ungapped : AllCutoffScores, BlastRawCutoffs
x_DropAnnotObjects() : CTSE_Chunk_Info, CSeq_annot_SNP_Info, CSeq_annot_Info
x_DropBlob() : CBDB_Cache
x_DropBuffer() : CPushback_Streambuf
x_DropIllegalQuals() : CFeatureItem
x_dropoff : BlastUngappedCutoffs, BlastInitialWordOptions, BlastCompo_GappingParams
x_dropoff_init : BlastUngappedCutoffs
x_dropoff_max : BlastInitialWordParameters
x_DropOverflow() : CBDB_Cache
x_DropTSE() : CDataSource
x_DSAttach() : CTSE_Split_Info, CTSE_Info_Object
x_DSAttachContents() : CTSE_Info_Object, CTSE_Info, CSeq_entry_Info, CSeq_annot_Info, CBioseq_set_Info, CBioseq_Info, CBioseq_Base_Info
x_DSDetach() : CTSE_Info_Object
x_DSDetachContents() : CTSE_Info_Object, CTSE_Info, CSeq_entry_Info, CSeq_annot_Info, CBioseq_set_Info, CBioseq_Info, CBioseq_Base_Info
x_DSMapObject() : CTSE_Info, CSeq_entry_Info, CSeq_annot_Info, CBioseq_set_Info, CBioseq_Info
x_DSUnmapObject() : CTSE_Info, CSeq_entry_Info, CSeq_annot_Info, CBioseq_set_Info, CBioseq_Info
x_DumpBlob() : CGridDebugContext
x_DumpFields() : CBDB_FileDumper
x_DumpOutput() : CAppHitFilter
x_DumpPkgInfo() : CAppPackagesDlg
x_DumpRegSettings() : CGBenchApp
x_DumpRequest() : CEUtilsApp
x_DupFeatSeverity() : CValidError_bioseq
x_DupLocal() : CBuildDatabase
x_EditAndAddBioseq() : CBuildDatabase
x_EditHeaders() : CBuildDatabase
x_Empty() : CTrackContainer, CSequenceTrack, CLayoutTrack, CGlyphContainer, CFeaturePanel, CCompoundRWRegistry, CTwoLayerRegistry, CCompoundRegistry, CMemoryRegistry, IRegistry, CEnvironmentRegistry
x_EnableAddRename() : CSnpFilterUI
x_EnableAllTests() : CNcbiTestApplication
x_EnableAnnotIndex() : CTSE_Chunk_Info
x_EnableCopyDelete() : CSnpFilterUI
x_EnabledEditOK() : CTrackCreatorUI
x_EnableIcon() : CLayoutTrack
x_EnableSave() : CSnpFilterUI
x_Encoding_CSeq_data2CSeqUtil() : CBlastSeqVectorFromCSeq_data
x_End() : CSyncQueue< Type, Container >
x_EndDrag() : CSplitter
x_EndMess() : CNcbiDiag
x_EndModal() : CRunToolDlg
x_EndNamespace() : CObjectOStreamXml
x_EndOfPacket() : CId2ReaderBase
x_EndOfWhat() : CDB_Exception
x_EndRead() : CBDB_File
x_EndsWithStrain() : CDeflineGenerator
x_EndTypeNamespace() : CObjectOStreamXml, CObjectIStreamXml
x_EndWriteGBSet() : CGBSeqFormatter
x_EnsureAllDeps() : CNcbiTestApplication
x_EnsureBlobInfoRead() : CNCBlobLockHolder
x_EnsureChildOrder() : CNcbiTestTreeElement
x_EnsurePos() : CFastaAlignmentBuilder
x_Enumerate() : CCompoundRWRegistry, CTwoLayerRegistry, CCompoundRegistry, CMemoryRegistry, IRegistry, CEnvironmentRegistry
x_Equals() : CSeq_id_Textseq_Tree, CRangeCollection< Position >, CAlignRangeCollection< TAlnRange >, CSparse_CI, CAlnVecIterator, CSparseIterator, CAlnVecIterator, CTempString
x_Erase() : CSeq_id_Textseq_Tree, CSyncQueue< Type, Container >
x_EraseElement() : CCache< TKey, TValue, THandler, TLock, TSize >
x_EraseItem() : CSelListModelImpl< Item >
x_EraseLast() : CCache< TKey, TValue, THandler, TLock, TSize >
x_EraseMarkedItems() : CSelListModelImpl< Item >, CAlnMultiModel
x_Err : CRWStreambuf
x_Error() : CWig2tableApplication, CGFFReader, CGff3Reader
x_ErrorCodeToString() : CPssmCreateTestFixture, CPssmEngine
x_ErrPos : CRWStreambuf
x_EstimateMismatchCount() : oligofar::CBatch
x_EvalBoolean() : CEntrez2ClientApp
x_EvalExons() : CCompartApp::CCompartment
x_EvalFirst() : CStringUTF8
x_EvalNext() : CStringUTF8
x_EvaluateMinKey() : CMergeVolumes
x_ExceptionIsLegalForFeature() : CFeatureItem
x_Execute() : CSFTranslationJob, CEpigenomicsJob, CLDBlockJob, CHapmapJob, CGapJob, CBinsJob, CSGCalcFeatHistJob, CSGFeatureJob, CSGSeqGraphJob, CSGSwitchPointJob, CSGSegmentsSeqIDJob, CSGSegmentMapJob, CSeqGraphicJob, CSGAlignScoringJob, CSGAlignmentJob, CSnpJob
x_ExecuteNextTaskInQueue() : CAppTaskService
x_ExecuteReadyTasks_OnThread() : CSchedulerEngine
x_ExecuteSearch() : CDataMiningPanel
x_ExecuteSql() : CSQLITE_Connection
x_Exists() : CMRUCache
x_Exon2DS() : CSplignFormatter
x_Exp10() : CGlDrawScale
x_Expand() : CLayoutTrack, CFeaturePanel, CDataTrack
x_ExpandAliases() : CSeqDBAliasNode
x_ExpandCombinedQuals() : CCleanup_imp
x_ExpandHspRange() : CSubjectRangesSet
x_ExpandPattern() : CSeqSearch
x_ExpandRecursion() : CFindRSites
x_ExpandStackTrace() : CStackTrace
x_Extend() : CMemoryFileMap
x_ExtendDSWithWidths() : CAlnMix
x_ExtendedCleanupBioSource() : CCleanup_imp
x_ExtendedCleanupBioSourceDescriptorsAndFeatures() : CCleanup_imp
x_ExtendedCleanupBioSourceFeatures() : CCleanup_imp
x_ExtendedCleanupMolInfoDescriptors() : CCleanup_imp
x_ExtendedCleanupPubs() : CCleanup_imp
x_ExtendHit() : CElementaryMatching, CCpGIslands
x_ExtendSingleGeneOnmRNA() : CCleanup_imp
x_ExtendSubpath() : CMMAligner
x_ExtendToQueryEnd() : oligofar::TAligner_SW< CQuery, CSubject >
x_ExtractAlignmentData() : CPsiBlastInputData, CPsiBlastInputClustalW
x_ExtractAllData() : CSeqDBIsam
x_ExtractCScopesAndMasks() : CQuerySplitter
x_ExtractData() : CSeqDBIsam
x_ExtractDeflines() : CWriteDB_Impl
x_ExtractEntry() : CTar
x_ExtractNucProtDescriptors() : CCleanup_imp
x_ExtractPageData() : CSeqDBIsam
x_ExtractQueries() : CBlastFormatterApp
x_ExtractQueryForPssm() : CPsiBlastInputData, CPsiBlastInputClustalW
x_ExtractQueryFromMsa() : CPsiBlastInputClustalW
x_ExtractQueryFromPssm() : CPsiBlastImpl
x_ExtractQueryIds() : CRemoteBlast
x_ExtractSuffixFromInitials() : CCleanup_imp
x_ExtractUserSpecifiedMasks() : CRemoteBlast
x_FailJob() : CGridWorkerNode
x_FailJobs() : CQueue
x_FastaSeqIdWrite() : CTitleProcess
x_FastaToSeqLoc() : CBlastFastaInputSource
x_FaultcodeEnumToCode() : CSoapFault
x_FaultMustUnderstand() : CSoapServerApplication
x_FaultNoListeners() : CSoapServerApplication
x_FaultServer() : CSoapServerApplication
x_FaultVersionMismatch() : CSoapServerApplication
x_FeatComments() : CFlatGatherer
x_FeatureID() : CGFFReader
x_Fetch() : CBDB_File
x_FetchAll() : CSnpTableJob
x_FetchBlobAttributes() : CBDB_Cache
x_FetchBufferDecompress() : CBDB_RawFile
x_FetchData() : CRemoteBlastDbAdapter
x_FetchFirst_Prolog() : CBDB_FileCursor
x_FetchFtable() : CSnpJob
x_FetchGraphs() : CSnpJob
x_FetchIdLine() : oligofar::CFastqFileReader
x_FetchOnlySpecial() : CSnpTableJob
x_FetchReadData() : oligofar::CFastqFileReader
x_FileMRUList() : CProjectLoadOptionPanel
x_Fill() : CSimpleBufferT< T, ResizeStrategy >
x_FillBlobIdsFromCache() : CNCBlobStorage
x_FillBlock() : CAsnRetrieveJob
x_FillBuffer() : CPushback_Streambuf, CCgiEntryReader
x_FillCache() : CSeqVector_CI
x_FillCacheFromDBPart() : CNCBlobStorage
x_FillCacheFromDBVolume() : CNCBlobStorage
x_FillClass() : CAsnRetrieveJob
x_FillContainer() : CAsnRetrieveJob
x_FillDeflineAndId() : CShowBlastDefline
x_FillDescrAnnot() : CLDS_Query
x_FillDescrObj() : CLDS_Query
x_FillIdentityInfo() : CDisplaySeqalign
x_FillInserts() : CDisplaySeqalign
x_FillKnownStrands() : CSeq_align_Mapper_Base
x_FillList() : CLocationPanel, CwxHistogramDlg
x_FillLocList() : CDisplaySeqalign
x_FillNodeMapData() : CGuideTreeCGIMap
x_FillObjects() : CObjectListWidgetSel
x_FillProjectsList() : CProjectSelectorPanel
x_FillRecord() : CQueue
x_FillScoreMatrix() : CCmdLineBlastXMLReportData
x_FillSeqBuffer() : CSeqDBImpl
x_FillSeqData() : CPhrap_Seq
x_FillSeqid() : CDisplaySeqalign
x_FilterHasId() : CSeqDBVol
x_FilterItems() : CBLAST_DB_Dialog, CItemSelectionPanel
x_FilterSelected() : CSnpFilterListDialog
x_Finalize() : CSQLITE_Statement
x_FinalizeAlignedCompartment() : CSplign
x_FinalizeSetupDiag() : CDiagContext
x_Find() : CRangeCollection< Position >, CLocalHookSetBase, CSeq_annot_Finder, CThreadPoolEngine, CSchedulerEngine, CAttrRangeCollection< Attr, Position >, CArgDescriptions, CArgs, CCgiArgs
x_FindAlignmentSubsets() : CMultiAligner
x_FindAndCombine() : CMaskedRangeSet
x_FindAnnot() : CwxAnnotConfigDlg, CAnnotConfigDlg
x_FindBestJ() : CMMAligner
x_FindBestPath() : CMultiAligner
x_FindBestTSE() : CDataSource_ScopeInfo, CDataSource
x_FindBestTSEInIndex() : CDataSource_ScopeInfo
x_FindBioObject() : CTSE_Info
x_FindBioseq_Info() : CScope_Impl, CDataSource
x_FindBioseq_set_Info() : CDataSource
x_FindBioseqInfo() : CTSE_ScopeInfo, CScope_Impl
x_FindBlastDBPath() : CSeqDBAliasSets
x_FindByFingerprint() : CDockLayoutTree
x_FindChunk() : CTSE_Split_Info
x_FindClosestSeqPos() : CAlnMap
x_FindConservedColumns() : CMultiAligner
x_FindConsistentHitSubset() : CMultiAligner
x_FindConstraints() : CMultiAligner
x_FindDataSource() : CObjectManager
x_FindDbInfoFromAvailableDatabases() : CBlastServices
x_FindDesc() : CBioseq_Base_Info
x_FindDockDropTargetByPos() : CDockContainer
x_FindDomainHits() : CMultiAligner
x_FindFingerPrint64() : CNWAligner
x_FindFreeChain() : CNCMMReserve
x_FindInClusterConstraints() : CMultiAligner
x_FindIndexBounds() : CSeqDBIsam
x_FindInfo() : CSeq_id_PDB_Tree, CSeq_id_Patent_Tree, CSeq_id_Giim_Tree, CSeq_id_General_Tree, CSeq_id_Local_Tree, CFeatTree
x_FindInNegativeList() : CSeqDBIsam
x_FindItemByLabel() : CItemSelectionPanel, CAppExplorerService
x_FindItemByPanel() : CMinPanelContainer
x_FindItemByPos() : CMinPanelContainer
x_FindLargestEdge() : CTree
x_FindListeners() : CSoapServerApplication
x_FindListenersByName() : CSoapServerApplication
x_FindLocalHits() : CMultiAligner
x_FindLocalInClusterHits() : CMultiAligner
x_FindMatchByAcc() : CSeq_id_Textseq_Tree
x_FindMatchByName() : CSeq_id_Textseq_Tree
x_FindNextValidIdWithinRange() : CMaskInfoRegistry
x_FindNoncodingFeatureKeywordProduct() : CAutoDefFeatureClause
x_FindNuclLength() : CWriteDB_Volume
x_FindParent() : CProjectFileWriter
x_FindPatternHits() : CMultiAligner
x_FindQueryClusters() : CMultiAligner
x_FindQueryOccurrences() : CPhiblastTestFixture
x_FindRegion() : CSeqDBAtlas
x_FindRelationByName() : CObjectConverter
x_FindRPSHits() : CMultiAligner
x_FindRSite : CFindRSites
x_FindSampleToLeft() : CTraceGraph
x_FindSampleToRight() : CTraceGraph
x_FindSegment() : CSeqMap, CDense_seg
x_FindSeq() : CPhrapReader
x_FindSeq_annot_Info() : CDataSource
x_FindSeq_entry_Info() : CDataSource
x_FindSeq_feat() : CTSE_Info
x_FindSeq_id_Info() : CScope_Impl
x_FindSequenceFragments() : CSeqTextPane
x_FindStrInfo() : CSeq_id_Textseq_Tree
x_FindStrMatch() : CSeq_id_Textseq_Tree
x_FindSubItem() : CMenuItem
x_FindTSE_Info() : CDataSource
x_FindType() : CSoapReadHook
x_FindUsedGis() : CTracebackSearchTestFixture
x_FindVolName() : CSeqDBVolSet
x_Finish() : CTrackCreatorUI, CAppJobTask, CProjectLoadOptionPanel
x_FinishCommand() : CNCMessageHandler
x_FinishParsing() : CSeq_annot_SNP_Info
x_FinishReadingBlob() : CNCMessageHandler
x_FireCellUpdated() : CwxAbstractTableModel
x_FireDataChanged() : CwxAbstractTableModel
x_FireEvent() : CProjectViewLinkManager
x_FireRowsDeleted() : CwxAbstractTableModel
x_FireRowsInserted() : CwxAbstractTableModel
x_FireRowsUpdated() : CwxAbstractTableModel
x_FireStructureChanged() : CwxAbstractTableModel
x_FireTableChanged() : CwxAbstractTableModel
x_FireViewEvent() : CGBDocument
x_FirstDesc() : CSeqdesc_CI
x_FixCompression() : CProcessor_ID2
x_FixDataFormat() : CProcessor_ID2
x_FixEtAl() : CCleanup_imp
x_FixInitials() : CCleanup_imp
x_FixNucProtSources() : CCleanup_imp
x_FixPIDDbtag() : CCleanup_imp
x_FixProjectTitle() : CProjectPrx
x_FixProteinIDs() : CCleanup_imp
x_FixSegSetSource() : CCleanup_imp
x_FixSetSource() : CCleanup_imp
x_FixStrand() : CBlastSeqVectorOM
x_FixString() : CSeqDBImpl
x_FixSuffix() : CCleanup_imp
x_FlattenPubEquiv() : CCleanup_imp
x_Flush() : CWriteDB_GiIndex, CWriteDB_IsamData, CWriteDB_IsamIndex, CWriteDB_GiMaskOffset, CWriteDB_GiMaskData, CWriteDB_SequenceFile, CWriteDB_HeaderFile, CWriteDB_IndexFile, CWriteDB_File, CWriteDB_ColumnIndex, CWriteDB_ColumnData, CDBAPI_CacheIWriter, CTar, CCgiEntryReader
x_FlushAll() : CSeqDBAtlas
x_FlushComments() : CFlatGatherer
x_FlushCurChunk() : CNCBlob
x_FlushCurrentEntry() : CCgiEntryReaderContext
x_FlushNumericIndex() : CWriteDB_IsamIndex
x_FlushStateEventQueue() : CAppJobDispatcher
x_FlushStringIndex() : CWriteDB_IsamIndex
x_FlyCG_PtoR() : CDeflineGenerator
x_ForceComplete() : CCgiEntry
x_ForceSeqTypes() : CSeq_loc_Mapper_Base
x_ForceUnique() : CCgiEntry
x_ForEachProject() : CWorkspaceFolderConstPrx
x_ForEachProjectItem() : CProjectFolderConstPrx
x_ForegroundJob() : CSGGenBankDS
x_ForgetTSE() : CScopeInfo_Base, CBioseq_ScopeInfo, CDataSource
x_FormatAccession() : CFlatItemFormatter
x_FormatAlignment() : CGFF3_Formatter
x_FormatAttr() : CGFFFormatter, CGFF3_Formatter
x_FormatDBSourceID() : CDBSourceItem
x_FormatDenseg() : CGFF3_Formatter
x_FormatErrorMessage() : CNetScheduleHandler
x_FormatGBNoteQuals() : CSourceFeatureItem
x_FormatLabel() : CAxisRenderer
x_FormatLocation() : CFtableFormatter
x_FormatNoteQual() : CSourceFeatureItem, CFeatureItem
x_FormatNoteQuals() : CSourceFeatureItem, CFeatureItem
x_FormatOrganismLine() : CGenbankFormatter
x_FormatQual() : CSourceFeatureItem, CFeatureItem
x_FormatQuals() : CSourceFeatureItem, CFeatureItem, CFeatureItemBase, CFtableFormatter
x_FormatRefJournal() : CFlatItemFormatter
x_FormatRefLocation() : CFlatItemFormatter
x_FormatReply() : CEntrez2ClientApp
x_FormatSourceLine() : CGenbankFormatter
x_Found() : CLocalHookSetBase, CSeqMap_CI
x_FrameFromSeqLoc() : CCleanup_imp
x_Free() : CWriteDB_IsamIndex, CSeqDBAtlas, CNcbiTable< TValue, TRow, TColumn >, CChecksum
x_FreeAll_NoLock() : CBucketPool< Value, Lock, RPool >
x_FreeBlobIdLocks() : CNCBlobStorage
x_FreeBuffer() : CScoringJob
x_FreeHash() : CNCMMDBPagesHash
x_FreeItems() : CTextViewRetrieveResult
x_FromUserObject() : CDockContainer, CBLASTParams
x_Full_AddChildToContainer() : CDockContainer
x_Full_AddGrandChildrenAsSiblingsInContainer() : CDockContainer
x_Full_AddGrandChildrenToContainer() : CDockContainer
x_Full_AddSiblingInContainer() : CDockContainer
x_Full_CleanLayoutTree() : CDockContainer
x_Full_CleanLayoutTreeBranch() : CDockContainer
x_Full_DisconnectChildren() : CDockContainer
x_Full_ReduceContainer() : CDockContainer
x_Full_ReduceHiddenContainer_IfNeeded() : CDockContainer
x_Full_RemoveNode() : CDockContainer
x_Full_UnhideContainer_AddChildren() : CDockContainer
x_FuncCall() : CAlignFilter
x_FuseMolInfos() : CCleanup_imp
x_GarbageCollect() : CSeqDBAtlas
x_GatherAlignments() : CFlatGatherer
x_GatherBioseq() : CFlatGatherer
x_GatherCDSReferences() : CFlatGatherer
x_GatherCluster() : CAlignedFeatureGraph
x_GatherComments() : CFlatGatherer
x_GatherDescInfo() : CCommentItem
x_GatherFeatInfo() : CCommentItem
x_GatherFeatures() : CFlatGatherer
x_GatherFeaturesOnLocation() : CFlatGatherer
x_GatherIdentStats() : CContigAssembly
x_GatherInfo() : CWGSItem, CVersionItem, CSourceItem, CSequenceItem, CSegmentItem, CReferenceItem, CPrimaryItem, COriginItem, CLocusItem, CKeywordsItem, CFlatItem, CGenomeProjectItem, CGenomeItem, CGapItem, CSourceFeatureItem, CFeatureItem, CFeatHeaderItem, CDeflineItem, CDBSourceItem, CDateItem, CContigItem, CLocalIdComment, CGsdbComment, CHistComment, CGenomeAnnotComment, CCommentItem, CBaseCountItem, CAlignmentItem, CAccessionItem
x_GatherReferences() : CFlatGatherer
x_GatherRemark() : CReferenceItem
x_GatherSeqEntry() : CFlatGatherer
x_GatherSequence() : CFlatGatherer
x_GatherSourceFeatures() : CFlatGatherer
x_GatherWGS() : CGenbankGatherer
x_GBBSourceComment() : CFlatGatherer
x_GC() : CLoadInfoMap< Key, Info >
x_GC_CleanDBPart() : CNCBlobStorage
x_GC_CleanDBVolume() : CNCBlobStorage
x_GC_CollectPartsStatistics() : CNCBlobStorage
x_GC_DeleteExpired() : CNCBlobStorage
x_GC_IsDBPartEmpty() : CNCBlobStorage
x_Gene2Accn_Filter() : CGeneFileWriter
x_Gene2Accn_LineToRecord() : CGeneFileWriter
x_Gene2Accn_ParseLine() : CGeneFileWriter
x_Gene2Accn_ProcessFile() : CGeneFileWriter
x_Gene2PM_LineToRecord() : CGeneFileWriter
x_Gene2PM_ParseLine() : CGeneFileWriter
x_Gene2PM_ProcessFile() : CGeneFileWriter
x_GeneIdToGi() : CGeneInfoFileReader
x_GeneIdToOffset() : CGeneInfoFileReader
x_GeneInfo_LineToRecord() : CGeneFileWriter
x_GeneInfo_ParseLine() : CGeneFileWriter
x_GeneInfo_ProcessFile() : CGeneFileWriter
x_GenerateAutoLabel() : CPhyloTreeLabel
x_GenerateLabel() : CPhyloTreeLabel, CGlDrawScale
x_GenerateLabelPositions() : CRuler
x_GenerateLabels() : CAxisRenderer
x_GenerateNewGis() : CSeqAlignFilter
x_GenerateTextItemsFromObjects() : CObjectTextWidget
x_GenerateTexture() : IPhyloTreeRenderer
x_Get() : CSeq_id_Other_Tree, CSeq_id_Named_annot_track_Tree, CSeq_id_Gpipe_Tree, CSeq_id_Tpd_Tree, CSeq_id_Tpe_Tree, CSeq_id_Tpg_Tree, CSeq_id_Prf_Tree, CSeq_id_Swissprot_Tree, CSeq_id_Pir_Tree, CSeq_id_GB_Tree, CSeq_id_Textseq_Tree, CSeq_id_Gi_Tree, CSeq_id_Gibbmt_Tree, CSeq_id_Gibbsq_Tree, CSeq_id_int_Tree, CStreamPathHookBase, CPathHook, CwxClipboardHelper< wxString >, CwxClipboardHelper< T >, CCompoundRWRegistry, CTwoLayerRegistry, CCompoundRegistry, CMemoryRegistry, IRegistry, CSafeStaticGuard, CEnvironmentRegistry
x_GetAccVer() : CScope
x_GetActiveContainerByPos() : CDockManager
x_GetAlignedSeqIds() : CHitMatrixDataSource
x_GetAlignGlyphType() : CAlignmentTrack
x_GetAlignIter() : CAnnotObject_Info
x_GetAlignments() : CSGAlignmentJob
x_GetAlignmentScore() : CAlignFilter
x_GetAlignmentTooltip() : CAlnVecRow
x_GetAlignmentTooltip_Gap() : CAlnVecRow
x_GetAlignmentTooltip_General() : CAlnVecRow
x_GetAlignmentTooltip_Insert() : CAlnVecRow
x_GetAlignmentTooltip_Unaligned() : CAlnVecRow
x_GetAlignSmear() : CSGAlignmentJob
x_GetAllele() : CSeq_annot_SNP_Info
x_GetAlleleIndex() : CSeq_annot_SNP_Info
x_GetAln() : CDiagHit
x_GetAlnInfo() : CVecscreen, CAlnGraphic
x_GetAlnRange() : CDiagHitElement
x_GetAlnVecForSeqalign() : CDisplaySeqalign
x_GetAmb() : CSeqDBIdxFile
x_GetAmbChar() : CSeqDBVol
x_GetAmbigSeq() : CSeqDBVol
x_GetAnnotCount() : CSeq_annot_Info
x_GetAnnotId() : CProjectFileWriter
x_GetAnnotName() : CAlignmentSmear
x_GetAnnotNames() : CAnnot_Collector
x_GetAnnotObject_Info() : CSeq_feat_Handle
x_GetAnnotObject_InfoAny() : CSeq_feat_Handle
x_GetAnnotObjs() : CTSE_Info
x_GetAnnots() : CSeq_annot_CI
x_GetAnnotSelector() : CDensityMapDS
x_GetAnnotSet() : CAnnotTypes_CI
x_GetAPI() : CNSInfoCollector
x_GetAppExplorerService() : CAppExplorerCmdHandler
x_GetAppTaskService() : CProjectCmdHandler, CAppExplorerCmdHandler
x_GetAreaByVPPos() : CSeqGraphicPane, CCrossAlnPane, CSeqTextPane, CPhyloTreePane, CHitMatrixPane, CGlWidgetPane, CAlnMultiPane
x_GetAreaByWindowPos() : CGlWidgetPane, CAlnMultiPane
x_GetArgs() : CGBenchApplication
x_GetArraysCount() : CComboChartDataSource
x_GetAsnDefline() : CSeqDBVol
x_GetAssociatedGeneInfo() : CFeatureItem
x_GetAssociatedProtInfo() : CFeatureItem
x_GetAttrSep() : CGFFFormatter, CGFF3_Formatter
x_GetAvailableDatabases() : CBlastServices
x_GetBarHeight() : CSequenceTrack
x_GetBase() : CSyncQueue_I< Type, Container, TNativeIterator >, ITSE_Assigner
x_GetBaseFont() : CPdfFontHandler
x_GetBaseHeight() : CAlnVecRow
x_GetBaseInfo() : CSeqdesc_CI, CSeq_descr_CI, CSeq_entry_Info
x_GetBasePkgs() : CPkgManager
x_GetBaseWeight() : CCache< TKey, TValue, THandler, TLock, TSize >
x_GetBCPDataSize() : CODBC_BCPInCmd
x_GetBCPDataType() : CODBC_BCPInCmd
x_GetBinRange() : CLDBlockGlyph, CGwasGlyph, CBinsGlyph
x_GetBioseq() : CTSE_Info, ITSE_Assigner
x_GetBioseq_Info() : CScope_Impl
x_GetBioseq_Lock() : CScope_Impl
x_GetBioseq_set() : CTSE_Info, ITSE_Assigner
x_GetBioseq_set_Id() : CBioseq_set_Info
x_GetBioseq_set_Lock() : CScope_Impl
x_GetBioseqBinaryHeader() : CWriteDB_Impl
x_GetBioseqHandle() : CSeqMap, CScope_Impl
x_GetBioseqHandleFromTSE() : CScope_Impl
x_GetBit() : CSeqDBBitVector
x_GetBl2SeqHits() : CSplignApp
x_GetBlast4SearchRequestBody() : CRemoteBlast
x_GetBlobAccess() : CNCBlobStorage
x_GetBlobLoadInfo() : CReaderRequestResult
x_GetBottom() : CSplitter
x_GetButtonRect() : CAlnVecRow
x_GetCacheID() : CSeqDBImpl
x_GetCaptionPanelByWindow() : CWindowManager
x_GetCellIndex() : CSplitter
x_GetCGIContextParams() : CBlastHitMatrixCGIApplication
x_GetChain() : CNCMMReserve, CNCMMChainsPool
x_GetCharset() : CCgiEntry
x_GetCheckedMultiple() : CwxTreeCtrlEx
x_GetChildItems() : CExplorerItem
x_GetChildren() : CFeatTree
x_GetChunk() : CNCMMChunksPool
x_GetChunkIndex() : CNCMMSlab
x_GetChunks() : CAlnMap
x_GetChunksCnt() : CNCMMBigBlockSet
x_GetChunkToLoad() : CSeqMap
x_GetClassMark() : CSeqDBImpl, CSeqDBMemLease, CRegionMap, CSeqDBLockHold
x_GetCleanupInstances() : CInstancedAligner
x_GetClient() : CTaxTreeTestDlg, CTraceChromatogramLoader
x_GetClientLabelForMenu() : CWindowManager
x_GetClientsInNode() : CDockContainer
x_GetCmdFileName() : CFileDBEngine
x_GetCoding() : CSeqVector_CI
x_GetColor() : CTemplateScoringMethod, CWidgetDisplayStyle, CComboChart
x_GetColorArray() : CSeriesBase
x_GetColors() : CSequenceTextGraph
x_GetColumn() : CTableFieldHandle_Base, CSplitter
x_GetColumnId() : CSeqDBImpl
x_GetColumnType() : CAlnMultiRenderer
x_GetCommandName() : CELink_Request
x_GetComment() : CCommentItem, CSeq_annot_SNP_Info, CCompoundRWRegistry, CTwoLayerRegistry, CCompoundRegistry, CMemoryRegistry, IRegistry, CEnvironmentRegistry
x_GetCommentIndex() : CSeq_annot_SNP_Info
x_GetCompList() : CCommonComponentScorer
x_GetConfGraphH() : CTraceGraph
x_GetConfig() : CHistogramGlyph
x_GetConfigureEntry() : CMsvcSite
x_GetConnection() : CId2Reader, CId1Reader
x_GetConnectionArgs() : CNetScheduleControl
x_GetConsensusSeqVector() : CAlnVec
x_GetContainingFolder() : CGBProject
x_GetContext() : CAlnMultiRenderer, CAlnMultiPane, CGlCgiImageApplication, CCgiApplication
x_GetCount() : CEntrez2ClientApp
x_GetCreationOrder() : CSafeStaticPtr_Base
x_GetCtx() : CEUtilsApp
x_GetCType() : CStatementBase
x_GetCurDataSize() : CStatementBase
x_GetCurrentConnection() : CId2Reader
x_GetCurrentHitTrack() : CSeqGraphicWidget
x_GetCurrentMethodName() : CAlnMultiWidget
x_GetCurrentStyleView() : CSettingsSet
x_GetCurrentSubTask() : CBlastSearchTask, CCompositeAppTask, CProjectLoadingTask
x_GetCurrentViewField() : CSettingsSet
x_GetData() : CStatementBase
x_GetDataElement() : CSeqDBIsam
x_GetDataFileName() : CNCBlobStorage
x_GetDataPassword() : CNcbiResourceInfoFile
x_GetDataPtr() : CODBC_BCPInCmd
x_GetDataSize() : oligofar::CSRead
x_GetDataSource() : CNetBLAST_DMSearchTool
x_GetDataSourceDescr() : CUIDataSourceService
x_GetDataSourceFromDescr() : CUIDataSourceService
x_GetDataTerminator() : CODBC_BCPInCmd
x_GetDataTermSize() : CODBC_BCPInCmd
x_GetDateForBioseq() : CLocusItem
x_GetDBTree() : CNetBLASTUIDataSource
x_GetDbType() : CDisplaySeqalign
x_GetDeadLockDetect() : CBDB_Env
x_GetDefaults() : CAnalysisFile
x_GetDefinesEntry() : CMsvcSite
x_GetDeflineInfo() : CShowBlastDefline
x_GetDefMethodName() : CAlnMultiWidget
x_GetDeltaExtCompList() : CCommonComponentScorer
x_GetDescList() : CBioseq_Base_Info
x_GetDescr() : CBioseq_set_Info, CBioseq_Info, CBioseq_Base_Info
x_GetDescription() : CAutoDefFeatureClause
x_GetDescrTooltip() : CAlnVecRow
x_GetDiagSeverity() : CDiagSyntaxParser
x_GetDiagTS() : CPSSMAligner, CNWAligner
x_GetDistanceInstances() : CInstancedAligner
x_GetDockPanel() : CDockManager, CDockContainer
x_GetDocsums() : CEntrez2ClientApp
x_GetDocument() : CProjectConstPrx
x_GetDouble() : CWig2tableApplication
x_GetDriverName() : CODBC_Connection
x_GetDSInfo() : CScope_Impl
x_GetDSLocksCount() : CTSE_ScopeInfo
x_GetDstDendiag() : CSeq_align_Mapper_Base
x_GetDstDenseg() : CSeq_align_Mapper_Base
x_GetDstDisc() : CSeq_align_Mapper_Base
x_GetDstExon() : CSeq_align_Mapper_Base
x_GetDstPacked() : CSeq_align_Mapper_Base
x_GetDstSparse() : CSeq_align_Mapper_Base
x_GetDstSpliced() : CSeq_align_Mapper_Base
x_GetDstStd() : CSeq_align_Mapper_Base
x_GetDumpgnlLink() : CDisplaySeqalign
x_GetEffectiveRange() : CAlnGraphic
x_GetEmptySet() : CNCMMSizePool
x_GetEnabledTestsCount() : CNcbiTestApplication
x_GetEncode() : CBioseqContext
x_GetEncoded() : CNcbiResourceInfo
x_GetEnv() : CRemoteAppJob
x_GetErrCode() : CException
x_GetError() : CCompressionStream, CId2ReaderBase
x_GetExonDescription() : CAutoDefFeatureClause
x_GetExplorerItem() : CProjectTreePanel
x_GetExtra() : CSeq_annot_SNP_Info
x_GetExtraIndex() : CSeq_annot_SNP_Info
x_GetExtraInfo() : CFeatGlyph, CCdsGlyph
x_GetFakeDataSource() : CwxSettingsDlg, CSeqGraphicConfigPanel
x_GetFastaReaderDeflines() : CWriteDB_Impl
x_GetFeatIndex() : CSeq_feat_Handle
x_GetFeatIter() : CAnnotObject_Info
x_GetFeatsOnCdsProduct() : CFlatGatherer
x_GetFeatureClauseProductEnding() : CAutoDef
x_GetFeatureClauses() : CAutoDef
x_GetFeatureCode() : CObjectIndex
x_GetFeatureId() : CGuideTree
x_GetFeatureInfo() : CDisplaySeqalign
x_GetFeaturesById() : CTSE_Info
x_GetFeaturesByLocus() : CTSE_Info
x_GetFeatureTypeWord() : CAutoDefFeatureClause
x_GetFeedbackAgentPath() : CGBenchMonitorApp
x_GetFileRange() : CSeqDBColumn
x_GetFilteredBinaryHeader() : CSeqDBVol
x_GetFilteredHeader() : CSeqDBVol
x_GetFiltInfo() : CSeqDBImpl
x_GetFirstDesc() : CSeq_entry_Info, CBioseq_Base_Info
x_GetFirstEndSegmentIndex() : CSeqMap
x_GetFirstFreePtr() : CNCMMBlocksSet
x_GetFlags() : CAsn2FlatApp, CAsn2FastaApp, CGFFReader
x_GetFolder() : CDataLoadingAppJob
x_GetFormat() : CAsn2FlatApp, CAsn2FastaApp
x_GetFrom() : CAsn2FlatApp, CAsn2FastaApp
x_GetGapCount() : CAlnTableDS
x_GetGeneID() : CGFFFormatter
x_GetGeneidLabel() : CHG_Gene
x_GetGeneLinkUrl() : CDisplaySeqalign
x_GetGeneName() : CAutoDefFeatureClause
x_GetGeneRefViaCDS() : CDeflineGenerator
x_GetGenericInterval() : CAutoDefFeatureClause
x_GetGenomicExtent() : CSplign
x_GetGi() : CProjectFileWriter, CScope
x_GetGlobalConfig() : CLayoutTrack
x_GetGPos() : CRWStreambuf
x_GetGraphIter() : CAnnotObject_Info
x_GetGraphName() : CSGSeqGraphJob
x_GetGroupIndex() : CGroupMapWidget, CArgDescriptions
x_GetGSRR() : CRemoteBlast
x_GetGuiRegistryPath() : CAlignMultipleDemoApp, CFrameworkDemoApp, CGBenchApp, CwxNCBIApp
x_GetHandler() : CImageIO
x_GetHdr() : CSeqDBImpl, CSeqDBIdxFile
x_GetHdrAsn1() : CSeqDBVol
x_GetHdrAsn1Binary() : CSeqDBVol
x_GetHeaders() : CMsvcProjectMakefile
x_GetHeaderSize() : oligofar::CSRead
x_GetHeight() : CSplitter
x_GetHelpUrl() : IHelpHandler
x_GetHitDeflineInfo() : CShowBlastDefline
x_GetHost() : CMouseZoomHandler, CMinimapHandler, CAlnVecRow, CAlignMarkHandler
x_GetIconIdxById() : CLayoutTrack
x_GetIconRect() : CLayoutTrack
x_GetIconState() : CLayoutTrack
x_GetIconsTooltip() : CAlnVecRow
x_GetId() : CSeqDBIsam, CElementaryMatching
x_GetIdIndex() : CwxChooseSeqDlg
x_GetIdLength() : oligofar::CSRead
x_GetIdObjects() : CTSE_Info
x_GetIdOffset() : oligofar::CSRead
x_GetIds() : CValidError_align
x_GetIdx() : CSpliceRanker
x_GetImageIndexByAlias() : CAppExplorerService
x_GetImpl() : CScopeTransaction, CGBReleaseFile
x_GetImplementation() : CFeature_table_reader, CGen_code_table, CSeqportUtil
x_GetIndex() : CSeqMap_CI, CSeqMap_CI_SegmentInfo
x_GetIndexByWindowPos() : CSelectionControl, CMapControl
x_GetIndexFileName() : CNCBlobStorage
x_GetIndexKeyOffset() : CSeqDBIsam
x_GetIndexString() : CSeqDBIsam
x_GetIndicator() : CStatementBase
x_GetInfo() : CEntrez2ClientApp, CFeatTree, CSeq_entry_EditHandle, CSeq_entry_Handle, CSeq_annot_EditHandle, CSeq_annot_Handle, CBioseq_set_EditHandle, CBioseq_set_Handle, CBioseq_EditHandle, CBioseq_Handle, CSeq_id_Handle
x_GetInput() : CDebugDumpViewer
x_GetInserts() : CDisplaySeqalign
x_GetInstance() : CObjectFactory, CObjFingerprint
x_GetIntergenicSpacerClauseList() : CAutoDef
x_GetInterval() : CWorkerNodeIdleThread
x_GetIntron() : CFeatGlyph
x_GetIStreamCache() : CLDS_DataLoader
x_GetITDescriptor() : CODBC_CursorCmdExpl, CODBC_CursorCmd, CDBL_CursorCmd, CTL_CursorCmdExpl, CTL_CursorCmd
x_GetItem() : CMapControl, CSelListModelImpl< Item >, CAlnMultiModel, CDiagConsoleCache
x_GetItemData() : CThemeConfigPanelBase
x_GetItemIndex() : CSelListModelImpl< Item >, CAlnMultiModel
x_GetItemInfo() : CItemsInfo
x_GetItems_Object() : CObjectTextWidget
x_GetItemsCount() : CSelectionControl, CSelListModelImpl< Item >, CAlnMultiModel
x_GetItemsFromIds() : CProjectTreePanel
x_GetItemShift() : CMapItem, CGroupMapWidget::CGroupItem
x_GetIterator() : CSeqVector
x_GetJobDetails() : CGridJobStatus
x_GetJobName() : CXmlRetrieveJob, CTextRetrieveJob, CFlatFileRetrieveJob, CFlatFeatureRetrieveJob, CFastaRetrieveJob, CAsnRetrieveJob
x_GetJobRecord() : CAppJobDispatcher
x_GetJobStatus() : SNetScheduleAPIImpl
x_GetJobTypeString() : CProjectServiceTestJob
x_GetKeys() : CGuiRegistry::CReadView
x_GetKeyState() : CMouseZoomHandler
x_GetKeywords() : CFlatItemFormatter
x_GetLabel() : CAnalysisFileLoader, CPhyloTreeLabel
x_GetLabels() : CBlastHitMatrix
x_GetLabelSize() : CRuler
x_GetLabelValue() : CAxisRenderer
x_GetLastEndSegmentIndex() : CSeqMap
x_GetLaterDate() : CLocusItem
x_GetLeft() : CSplitter
x_GetLen() : CAlnMap
x_GetLength() : CAlignSeqTableModel
x_GetLevelEnd() : CSeqMap_CI_SegmentInfo
x_GetLevelPos() : CSeqMap_CI_SegmentInfo
x_GetLevelRealEnd() : CSeqMap_CI_SegmentInfo
x_GetLevelRealPos() : CSeqMap_CI_SegmentInfo
x_GetLimitTSE() : SSeqMapSelector
x_GetLine() : CWig2tableApplication
x_GetLinearAlignments() : CAlnMultiDSBuilder
x_GetLineByVPY() : CAlnMultiRenderer
x_GetLineByWindowY() : CAlnMultiRenderer, CAlnMultiPane
x_GetLineNumber() : CGFFReader
x_GetLineRect() : CAlnMultiRenderer, CAlnMultiPane
x_GetLineType() : CWiggleReader
x_GetLinkCounts() : CEntrez2ClientApp
x_GetLinked() : CEntrez2ClientApp
x_GetLinks() : CEntrez2ClientApp
x_GetLoadedState() : CThemeDlg
x_GetLoaderByName() : CObjectManager
x_GetLoaderParams() : CGBDataLoader
x_GetLocal() : CGuiRegistry
x_GetLocation() : CAsn2FlatApp, CAsn2FastaApp
x_GetLocsIter() : CAnnotObject_Info
x_GetLongestProtein() : CDeflineGenerator
x_GetMainWindow() : CGBenchGUI, CFrameworkDemoGUI
x_GetMap() : CPhyloTreeCGIApplication
x_GetMappedRanges() : CSeq_loc_Mapper_Base
x_GetMappedSeq_loc() : CSeq_loc_Mapper_Base
x_GetMarker() : CComboChart
x_GetMarkRect() : CSeqMarkHandler, CBookmarksHandler
x_GetMarkString() : CSeqDBImpl, CSeqDBMemLease, CRegionMap, CSeqDBLockHold
x_GetMaskDataColumn() : CSeqDBImpl
x_GetMaskDataColumnId() : CWriteDB_Impl
x_GetMaskingStates() : CFastaOstream
x_GetMasks() : CRemoteBlast
x_GetMasterForPart() : CBioseqContext
x_GetMatches() : CSequenceSearchJob, CObjectIndex
x_GetMatchType() : CVecscreen
x_GetMate() : oligofar::CSRead
x_GetMatrixName() : CPssmEngine
x_GetMaxDataSize() : CStatementBase
x_GetMaxNum() : CRuler
x_GetMemberId() : CAsnElementItem
x_GetMemberObject() : CAsnRetrieveJob
x_GetMemoryFileSegment() : CMemoryFileMap
x_GetMessageError() : CId2ReaderBase
x_GetMetaFileName() : CNCBlobStorage
x_GetMetaphoneKeys() : CSimpleDictionary
x_GetMethodTrace() : CTracingHandler
x_GetMinimized() : CSplitter
x_GetMinVolumeId() : CNCBlobStorage
x_GetMismatchCount() : CAlnTableDS
x_GetMode() : CAsn2FlatApp, CAsn2FastaApp
x_GetModeByCommand() : CSelectionPanel, CDataMiningPanel
x_GetModel() : CAlnMultiPane
x_GetModifierIndexList() : CAutoDef
x_GetModule() : SDiagMessage
x_GetMolInfo() : CBioseqContext
x_GetMyDataSet() : CThemePreviewMediator, CThemeMediator
x_GetMyPanel() : CThemePreviewMediator, CThemeMediator
x_GetName() : CTaxTreeBrowser
x_GetNamedScore() : CSeq_align
x_GetNativeITDescriptor() : CDBL_Connection, CTL_Connection
x_GetNcbi4na_colorsp() : oligofar::CQueryHash
x_GetNcbi4na_ncbi8na() : oligofar::CQueryHash
x_GetNcbi4na_ncbipna() : oligofar::CQueryHash
x_GetNcbi4na_ncbiqna() : oligofar::CQueryHash
x_GetNcbi4na_quality() : oligofar::CQueryHash
x_GetNewOLTModel() : CSequenceSearchJob, COrfSearchJob, CEntrezSearchJob, CCpgSearchJob, CNetBLAST_DMSearchJob, CSearchJobBase
x_GetNewTag() : CPhrapReader
x_GetNextComp() : CSplignApp
x_GetNextCounter() : CCache< TKey, TValue, THandler, TLock, TSize >
x_GetNextDesc() : CSeq_entry_Info, CBioseq_Base_Info
x_GetNextInCmdMap() : CNetServProtoParserBase
x_GetNextJob() : CGridWorkerNode
x_GetNextPair() : CSplignApp
x_GetNextSegment() : CSeqMap_CI_SegmentInfo
x_GetNode() : CGuideTree
x_GetNodeFeature() : CGuideTree
x_GetNoncodingProductFeatProduct() : CAutoDefFeatureClause
x_GetNotCachedPartId() : CNCBlobStorage
x_GetNumericArray() : CSeriesBase
x_GetNumericData() : CSeqDBIsam
x_GetNumericKey() : CSeqDBIsam
x_GetNumericSample() : CSeqDBIsam
x_GetNumGaps() : CDisplaySeqalign
x_GetNumOIDs() : CSeqDBVolSet, CSeqDBImpl
x_GetNumPubMedLinksForGeneId() : CGeneFileWriter
x_GetNumSeqs() : CSeqDBImpl, CAlnTableDS
x_GetNumSeqsStats() : CSeqDBImpl
x_GetObject() : CSeqMap, CSeq_entry_Info, CSeq_annot_Info, CBioseq_set_Info, CBioseq_Info
x_GetObjectManager() : CDataLoaderFactory
x_GetOffsetForGeneId() : CGeneFileWriter
x_GetOffsetForVariations() : CSeqTextPane
x_GetOid() : CSeqDBIsam, CBlastDbDataLoader
x_GetOidList() : CSeqDBImpl
x_GetOidMask() : CSeqDBOIDList
x_GetOldTag() : CPhrapReader
x_GetOM() : CSimpleOM
x_GetOpenDict() : CBDB_BlobDictStore< Key, Dictionary, Store >
x_GetOpenStore() : CBDB_BlobDictStore< Key, Dictionary, Store >
x_GetOperationMode() : CBlastDBAliasApp
x_GetOpTypeByEvent() : CTextSelHandler, CLinearSelHandler
x_GetOpTypeByState() : CLinearSelHandler
x_GetOrganism() : CAlignSeqTableModel
x_GetOrgModLabel() : CAutoDefModifierCombo
x_GetOrgnameForTaxId() : CGeneFileWriter
x_GetOrgRef() : CAlignGroup
x_GetOriginMetricSizeV() : CRuler
x_GetOrigObject() : CSnpTableView, CViewGraphic, CFeatTableView, CTextView, CPhyTreeView, CMultiAlignView, CMPCrossAlignView, CDotMatrixView, CCrossAlignView, CAnnotCompareView, CAlignSpanView, CProjectViewBase
x_GetOutputSize() : CCompressionStream
x_GetPacked2naSeqData() : CSeqVector
x_GetPacked4naSeqData() : CSeqVector
x_GetPacked8SeqData() : CSeqVector
x_GetPageHeight() : CPrintOptions
x_GetPageNameByWindow() : CDockNotebook, CDockContainer
x_GetPageNumElements() : CSeqDBIsam
x_GetPageScaling() : CPageHandler
x_GetPageWidth() : CPrintOptions
x_GetPairType() : oligofar::CSRead
x_GetPane() : CSeqTextWidget, CSeqGraphicWidget, CPhyloTreeWidget, CHitMatrixWidget, CGlWidgetBase, CAlnMultiWidget, CCrossAlnWidget
x_GetPanel() : CTextDataSource
x_GetPanelNumber() : CPanelGrid
x_GetPanelOffset() : CPageHandler
x_GetParamName() : CWig2tableApplication
x_GetParamsAsRegSetting() : CCreateNeedlemanWunschToolManager, CAutodefToolManager, CWindowMaskerTool, CCleanupTool, CTreeBuilderTool, CSplignTool, CMergeAlignmentsToolManager, CGroupAlignmentsToolManager, CFindOverlapTool, CCreateGeneModelToolManager, CCleanupAlignmentsToolManager, CAlgoToolManagerBase
x_GetParamsPanel() : CCreateNeedlemanWunschToolManager, CAutodefToolManager, CWindowMaskerTool, CCleanupTool, CTreeBuilderTool, CSplignTool, CMergeAlignmentsToolManager, CGroupAlignmentsToolManager, CFindOverlapTool, CCreateGeneModelToolManager, CCleanupAlignmentsToolManager, CAlgoToolManagerBase
x_GetParamValue() : CWig2tableApplication
x_GetParent() : CSeqGraphicPane, CGlPaneWidgetChildDemo, CCrossAlnPane, CFeatTree, CSeqTextPane, CPhyloTreePane, CHitMatrixPane, CAlnMultiPane
x_GetParsedQuery() : CEntrez2ClientApp
x_GetPartialDenseg() : CSeq_align_Mapper_Base
x_GetPartNumber() : CBioseqContext
x_GetPartsFromReply() : CBlastServices
x_GetPendingTasksCount() : CAppTaskServiceSlot
x_GetPipeName() : CGBenchPipe
x_GetPlainSeq_feat() : CSeq_feat_Handle
x_GetPluginManager() : CObjectManager
x_GetPointerArray() : CSeriesBase
x_GetPos() : CWig2tableApplication
x_GetPositionLabel() : CRuler
x_GetPPos() : CRWStreambuf
x_GetProcessedSize() : CCompressionStream
x_GetProductId() : CPromote
x_GetProductName() : CAutoDefNcRNAClause, CAutoDefFeatureClause
x_GetProjectService() : CWorkspaceConstPrx, CProjectCmdHandler
x_GetProjectsLock() : CWorkspaceConstPrx, CProjectService
x_GetPropertyByName() : CCgiRequest
x_GetProteinId() : CPromote
x_GetProtOffset() : CCdsGlyph
x_GetPseudo() : CFeatureItem
x_GetPutativeMatches() : CCompareSeqRegions
x_GetQual() : CFeatureItem
x_GetQualityCodesIndex() : CSeq_annot_SNP_Info
x_GetQualityCodesOs() : CSeq_annot_SNP_Info
x_GetQualityCodesStr() : CSeq_annot_SNP_Info
x_GetQueries() : CBlastDBCmdApp
x_GetQuery() : CPssmEngine
x_GetQueryFeatureList() : CDisplaySeqalign
x_GetQueryLength() : CPssmEngine
x_GetQueueSize() : CThreadPool_Impl
x_GetRangeForMixLoc() : CLayoutFeat
x_GetRangeLength() : CSeq_loc_Mapper_Base
x_GetRangeMap() : SIdAnnotObjs
x_GetRangeMapCount() : SIdAnnotObjs
x_GetRawSegFromSeg() : CAlnMap
x_GetRawSegType() : CAlnMap
x_GetRawSegTypes() : CAlnMap
x_GetRawStart() : CAlnMap
x_GetRawStop() : CAlnMap
x_GetReader() : CWinMaskCountsGenerator, SegMaskerApplication, CDustMaskApplication, CConvert2BlastMaskApplication, CBlobStorage_NetCache
x_GetReaderManager() : CGBDataLoader
x_GetReaderName() : CGBDataLoader
x_GetReadView() : CSettingsSet
x_GetRecordByRow() : CAlnMultiModel
x_GetRecords() : CGBDataLoader, CTSE_Split_Info, CTSE_Info, CTSE_Chunk_Info, CDataSource
x_GetRecsSortedByLength() : CAlignedFeatureGraph
x_GetRefMinusStrand() : CSeqMap
x_GetRefPosition() : CSeqMap
x_GetRefSeqid() : CSeqMap
x_GetRegion() : CSeqDBExtFile, CSeqDBAtlas
x_GetRegisteredEngine() : CAppJobDispatcher
x_GetRegistryRef() : CGuiRegistry
x_GetReportName() : CEFetch_Taxonomy_Request
x_GetRepr() : CBioseqContext
x_GetRequest() : CNSInfoCollector, CNSJobInfo
x_GetRequestInfo() : CRemoteBlast
x_GetRequestInfoFromFile() : CRemoteBlast
x_GetRequestInfoFromRID() : CRemoteBlast
x_GetResource() : CCgiApplication
x_GetResult() : CNSInfoCollector, CNSJobInfo
x_GetRetModeName() : CELink_Request, CEFetch_Request
x_GetRetTypeName() : CESearch_Request, CEFetch_Sequence_Request, CEFetch_Literature_Request
x_GetRight() : CSplitter
x_GetRing() : CGlTube< Curve >
x_GetRow() : CTableFieldHandle_Base, CSplitter
x_GetRowByLine() : CAlnMultiModel
x_GetRowLength() : CScoringJob
x_GetRowSeqLoc() : CMultiAlignView
x_GetRowTooltip() : CAlnMultiRenderer
x_GetSampleHspStream() : CTracebackSearchTestFixture
x_GetScaledPageSize() : CPageHandler
x_GetScheduledJob() : CSchedulerEngine
x_GetScope() : CBuildDatabase, CProjectViewBase
x_GetScopeImpl() : CScopeInfo_Base, CTSE_Handle, CSeq_entry_Handle, CSeq_annot_Handle, CBioseq_set_Handle, CBioseq_Handle
x_GetScopeInfo() : CTSE_Handle, CSeq_entry_EditHandle, CSeq_entry_Handle, CSeq_annot_EditHandle, CSeq_annot_Handle, CBioseq_set_EditHandle, CBioseq_set_Handle, CBioseq_EditHandle, CBioseq_Handle
x_GetScore() : CMultiAligner
x_GetScoreInfo() : CShowBlastDefline
x_GetScoreInfoForTable() : CShowBlastDefline
x_GetScoreOneCol() : CMultiAligner
x_GetScoringMRUListName() : CAlnMultiWidget
x_GetScrollValueForSourcePos() : CSeqTextWidget
x_GetSearchPath() : CMetaRegistry
x_GetSearchResults() : CRemoteBlast
x_GetSection() : CSettingsSet
x_GetSegFromRawSeg() : CAlnMap
x_GetSegment() : CSeqMap_CI, CSeqMap_CI_SegmentInfo, CSeqMap
x_GetSegmentEndPosition() : CSeqMap
x_GetSegmentException() : CSeqMap
x_GetSegmentInfo() : CSeqMap_CI
x_GetSegmentLength() : CSeqMap
x_GetSegmentPosition() : CSeqMap
x_GetSegs() : CDisplaySeqalign
x_GetSelected() : CProjectCmdHandler
x_GetSelectedAnnotName() : CwxAnnotConfigDlg, CAnnotConfigDlg
x_GetSelectedClient() : CDataMiningPanel
x_GetSelectedClients() : CWindowsDlg
x_GetSelectedDBItem() : CBLAST_DB_Dialog
x_GetSelectedId() : CwxChooseSeqDlg
x_GetSelectedItems() : CSelListModelImpl< Item >, CAppExplorerCmdHandler
x_GetSelectedMRUFilenames() : CProjectLoadOptionPanel
x_GetSelectedTasks() : CTaskTablePanel
x_GetSelectedType() : CScoreMethodsDlg
x_GetSelectionRect() : CSelectionHelper
x_GetSelections() : CFeatureCheckPanel
x_GetSelfHitHspStream() : CTracebackSearchTestFixture
x_GetSelfLoc() : CCompareSeqRegions
x_GetSelfScores() : CDistances
x_GetSemPred() : CBlockingQueue< TRequest >
x_GetSeq() : CSeqDBIdxFile, CSeqDBIter
x_GetSeq_align() : CSeq_align_Handle
x_GetSeq_annot_Info() : CSeq_feat_Handle
x_GetSeq_annot_Lock() : CScope_Impl
x_GetSeq_annotCore() : CSeq_annot_Handle
x_GetSeq_data() : CSeqMap
x_GetSeq_entry_Lock() : CScope_Impl
x_GetSeq_feat() : CDeleteSeqFeatCommand
x_GetSeq_graph() : CSeq_graph_Handle
x_GetSeq_id_Info() : CScope_Impl
x_GetSeqalign() : CMultiAligner
x_GetSeqAlignIds() : CHitMatrixDataSource
x_GetSeqAnnot() : CBlastHitMatrixCGIApplication
x_GetSeqAnnotFromBlastResults() : CNetBlastLoadingJob
x_GetSeqBuffer() : CSeqDBImpl
x_GetSeqFromSeqData() : CSeqportUtil_implementation
x_GetSeqGI() : CSeqDBImpl
x_GetSeqHistCompList() : CCommonComponentScorer
x_GetSeqIdNoCheck() : CBioObjectId
x_GetSeqLeftSeg() : CAlnMap
x_GetSeqLength() : CSeqDBImpl, CCompartApp, CAlnTableDS
x_GetSeqMap() : CSeqMap_CI, CSeqMap_CI_SegmentInfo
x_GetSeqMatch() : CDataSource_ScopeInfo, CDataSource
x_GetSeqRangeSelection() : CMultiAlignView
x_GetSeqResidueOffset() : CSeqDBVol
x_GetSeqRightSeg() : CAlnMap
x_GetSeqsFromReply() : CBlastServices
x_GetSeqType() : CSeqDBVol, CSeqDBExtFile
x_GetSequence() : CSeqDBVol, CSequenceSearchJob, CCrossPanelIR
x_GetSequenceCoding() : oligofar::CSRead
x_GetSequenceLength() : oligofar::CSRead
x_GetSequenceOffset() : oligofar::CSRead
x_GetSequenceRowFromScrollLine() : CSeqTextPane
x_GetSequences() : CBlastServices
x_GetSeqVector() : CSparseAln, CAlnVec
x_GetServerContext() : CCgiContext
x_GetSessionIndexByID() : CSearchToolBase
x_GetSessionIndexByListener() : CSearchToolBase
x_GetSessionIndexByQuery() : CSearchToolBase
x_GetSetsCurrentStyleKey() : CThemeSet
x_GetShowDisplayLevel() : CFeaturePanel
x_GetSignalGraphH() : CTraceGraph
x_GetSingleSelectedItem() : CProjectTreePanel
x_GetSize() : CSeqVector_CI
x_GetSizeIndex() : CNCDBStat
x_GetSkipAfter() : CSeqMap_CI_SegmentInfo
x_GetSkipBefore() : CSeqMap_CI_SegmentInfo
x_GetSkipUnknownDefault() : CObjectIStream
x_GetSkipUnknownVariantsDefault() : CObjectIStream
x_GetSNP_annot_Info() : CSeq_feat_Handle, CSeq_annot_Info
x_GetSNP_Info() : CSeq_feat_Handle, CTSE_Info
x_GetSNP_InfoAny() : CSeq_feat_Handle
x_GetSNPFeatCount() : CSeq_annot_Info
x_GetSortName() : CESearch_Request
x_GetSourceFeatViaCDS() : CDeflineGenerator
x_GetSourceName() : CGFFFormatter
x_GetSourcePosForPortScrollValue() : CSeqTextWidget
x_GetSpanFigure() : CNCServerStat
x_GetSpecies() : CAltValidator
x_GetSplicedSeqTitle() : CFeatGlyph
x_GetSpliceScores() : CSplicedAligner32, CSplicedAligner16, CSplicedAligner
x_GetSQLType() : CStatementBase
x_GetStackTrace() : CException
x_GetStart() : CScoringJob
x_GetStartStop() : CAlnTableDS
x_GetState() : CNCMessageHandler, CRemoteBlast
x_GetStateByStatus() : CThreadPoolEngine
x_GetStatement() : CNCDBFile
x_GetStatus() : CCompressionStream
x_GetStatusNoLock() : CJobStatusTracker
x_GetStatusString() : CAppJobDispatcher
x_GetStop() : CScoringJob
x_GetStopFlag() : CWorkerNodeIdleThread
x_GetStrand() : CSequenceDataTester
x_GetStreamCount() : CLDS_IStreamCache
x_GetStrForPrimary() : CPrimaryItem
x_GetString() : CConfig, CCgiCookie
x_GetStringArray() : CSeriesBase
x_GetStringListQual() : CFeatureItem
x_GetStringQual() : CFeatureItem
x_GetStrm() : COStreamHelper
x_GetStyle() : CAsn2FlatApp, CAsn2FastaApp
x_GetStyleKey() : CSettingsSet
x_GetStyleName() : CSettingsSet
x_GetStyleSection() : CSettingsSet
x_GetStyleView() : CSettingsSet
x_GetSubjectSequence() : CPssmCreateTestFixture, CPsiBlastInputData
x_GetSubObject() : CEditObjectDlg
x_GetSubSeqMap() : CSeqMap
x_GetSubSourceLabel() : CAutoDefModifierCombo
x_GetSubstate() : CMinimapHandler
x_GetSybaseCmd() : CTL_RowResult, CTL_BCPInCmd, CTL_Cmd
x_GetSybaseConn() : CTL_Connection
x_GetSynonyms() : CScope_Impl
x_GetTag() : CPhrapReader
x_GetTaskProgressCallback() : CTaskProgressReporter
x_GetTaxDefline() : CSeqDBVol
x_GetTaxId() : CAlignGroup
x_GetTaxonomy() : CSeqDBVol
x_GetTaxonSpecies() : CAltValidator
x_GetTBHeight() : CLayoutTrack
x_GetTBRect() : CLayoutTrack, CFeaturePanel
x_GetTermHierarchy() : CEntrez2ClientApp
x_GetTermList() : CEntrez2ClientApp
x_GetTermPos() : CEntrez2ClientApp
x_GetText() : CFastaSeqHdrItem, CSeqMarkHandler, CObjClipboard
x_GetTextAreaSize() : CAppTaskServiceSlot
x_GetTextAreaWidth() : CMapItem
x_GetThreeColorScore() : CColumnScoringMethod
x_GetTicksLabelsSizeV() : CRuler
x_GetTitle() : CMatePairGlyph, CFastaTitleItem, CAlignSeqTableModel
x_GetTlsData() : CTlsBase
x_GetTo() : CAsn2FlatApp, CAsn2FastaApp
x_GetToken() : CNetServProtoParserBase
x_GetTool() : CSequenceSearchForm, COrfSearchForm, CFeatureSearchForm, CEntrezSearchForm, CCpgSearchForm, CComponentSearchForm, CNetBLAST_DMSearchForm, CSearchFormBase
x_GetTooltip() : CAlignedFeatureGraph
x_GetTooltipCITED() : CBinsGlyph
x_GetTooltipCLIN() : CBinsGlyph
x_GetTooltipGAP() : CBinsGlyph
x_GetTooltipGCAT() : CBinsGlyph
x_GetTooltipSequence() : CAlnVecRow
x_GetTop() : CSplitter
x_GetTopItems() : CAppExplorerService
x_GetTopOffset() : CSeqMap_CI, CSeqMap_CI_SegmentInfo
x_GetTotalLength() : CSeqDBImpl
x_GetTotalLengthStats() : CSeqDBImpl
x_GetTrackValues() : CReaderBase
x_GetTranscriptId() : CPromote
x_GetTranscriptID() : CGFFFormatter
x_GetTree() : CSeq_id_Mapper
x_GetTrimmedTestName() : CNcbiTestApplication
x_GetTSE_Info() : CTSE_Handle, CAnnot_Collector
x_GetTSE_Lock() : CScope_Impl
x_GetTSE_ScopeInfo() : CScopeInfo_Base
x_GetTSESetWithBioseqAnnots() : CScope_Impl
x_GetTSESetWithOrphanAnnots() : CScope_Impl
x_GetTwoColorScore() : CColumnScoringMethod
x_GetUids() : CEntrez2ClientApp
x_GetUndoManager() : CProjectView
x_GetUnnamedAnnotObjs() : CTSE_Info
x_GetUnnamedIdObjects() : CTSE_Info
x_GetUnsavedProjects() : CProjectTask
x_GetUpperDescriptors() : CCleanup_imp
x_GetUrl() : CDisplaySeqalign
x_GetUserCompList() : CCommonComponentScorer
x_GetValidInputData() : CMultiAlignView
x_GetValue() : CTL_BCPInCmd, CTlsBase
x_GetValueAt() : CClipboard
x_GetVar() : CDataTypeModule
x_GetVerifyData() : CSerialObject
x_GetVerifyDataDefault() : CObjectOStream, CObjectIStream
x_GetVersion() : CSeq_id_Textseq_Tree
x_GetView() : CAsn2FlatApp, CAsn2FastaApp
x_GetViewLabel() : CAppExplorerService
x_GetViewRegistryPath() : CViewManagerService
x_GetViews() : CGBDocument
x_GetVisRange() : CDataTrack
x_GetVolumeLength() : CSeqDBImpl
x_GetVolumeList() : CDirTest, CDbTest
x_GetVolumeName() : CNCBlobStorage
x_GetVolumeNames() : CSeqDBAliasNode
x_GetVPPosByWindowPos() : CAlnMultiPane
x_GetVScrollMax() : CSeqTextWidget
x_GetWidth() : CSplitter
x_GetWord() : CWig2tableApplication
x_GetWorkspaceLock() : CProjectService
x_GetWritable() : CGuiRegistry
x_GetWriter() : CWinMaskConfig, SegMaskerApplication, CDustMaskApplication, CConvert2BlastMaskApplication
x_GetWriterManager() : CGBDataLoader
x_GiToGeneId() : CGeneInfoFileReader
x_GiToOffset() : CGeneInfoFileReader
x_GoodSeg() : CHitMatrixDataSource
x_GPos : CConn_Streambuf, CRWStreambuf
x_Greater() : CPhyloTreeNode
x_GrowCell() : CSplitter
x_GuardedLock() : CSyncQueue< Type, Container >
x_GuardedUnlock() : CSyncQueue< Type, Container >
x_GuardProteinQuery() : CPssmCreateTestFixture, CPssmEngine
x_GuessFormat() : CFileLoader
x_HandleAccels() : CGlWidgetPane
x_HandleArgs() : CGBenchApplication
x_HandleError() : CGlCgiImageApplication
x_HandleKeyEvent() : CPhyloTreePane
x_HandlePanelCommand() : CWindowManager
x_HandleProcessError() : CWorkerNodeRequest
x_HandleRemote() : CGBenchApplication
x_Handlers_handle() : CGlWidgetPane
x_HandleRunJobError() : CGridThreadContext
x_HasAmbig() : CSeqConvert_imp
x_HasAmbigIupacna() : CSeqConvert_imp
x_HasAmbigNcbi4na() : CSeqConvert_imp
x_HasAmbigNcbi8na() : CSeqConvert_imp
x_HasEntry() : CCompoundRWRegistry, CTwoLayerRegistry, CCompoundRegistry, CMemoryRegistry, IRegistry, CEnvironmentRegistry
x_HasEvent() : CStatusBarService
x_HasIdObjects() : CTSE_Info
x_HasLimitTSE() : SSeqMapSelector
x_HasMatches() : CObjectIndex
x_HasNoThreads() : CThreadPool_Impl
x_HasOperon() : CBioseqContext
x_HasParts() : CBioseqContext
x_HasProject() : CProjectViewBase
x_HasQual() : CFeatureItem
x_HasResizableColumn() : CAlnMultiHeaderHandler
x_HasSNP_annot_Info() : CSeq_annot_Info
x_HasSourceFeats() : CDeflineGenerator
x_HasWorkspace() : CGBenchGUI
x_HaveGiList() : CSeqDBVol
x_HaveIdFilter() : CSeqDBVol
x_HaveMixedSeqTypes() : CSeq_align_Mapper_Base
x_HaveNegativeList() : CSeqDBVol
x_HaveSequence() : CWriteDB_Impl
x_HideNodes() : CDockLayoutTree
x_HidePopup() : CMessageSlot
x_HideShowInputs() : CBLASTSearchParamsPanel
x_HistoryComments() : CFlatGatherer
x_HitBoundary() : CCgiEntryReader
x_HitIconTest() : CLayoutTrack
x_HitRangeBorder() : CAlignMarkHandler
x_HitSelectedLine() : CAlignMarkHandler
x_HitTest() : CTTWindow, CSplitter, CDockContainer, CTextSelHandler, CLinearSelHandler, CAlnMultiHeaderHandler, CAlignMarkHandler
x_HitTestButton() : CAlnVecRow
x_HitTestItemBox() : CSurveyBrowser
x_HitTestSeparator() : CSplitter
x_HitTitleBar() : CLayoutTrack
x_HonorStandardSettings() : CNcbiApplication
x_HorzMoveSelectionBy() : CMapControl
x_Hour() : CTimeSpan
x_HTGSComments() : CFlatGatherer
x_HungerSemPred() : CBlockingQueue< TRequest >
x_IdComments() : CFlatGatherer
x_Identical() : CCleanup_imp
x_IdenticalModifierLists() : CCleanup_imp
x_IdentifyAlnMixSeq() : CAlnMixSequences
x_IdentifyPotentialAnchors() : CAlnStats< _TAlnIdVec >
x_IdentToOid() : CSeqDBIsam
x_Idle() : CThreadPool_ServiceThread, CThreadPool_ThreadImpl
x_IdsToBitSet() : CSeqDBOIDList
x_IdToStrKey() : CSeq_id_PDB_Tree
x_IdXrefsAreReciprocal() : CValidError_bioseq
x_IdXrefsNotReciprocal() : CValidError_bioseq
x_ImpFeatToCdRegion() : CCleanup_imp
x_ImportQuals() : CFeatureItem
x_Inapplicable_Method() : CVariant
x_IncludesMinus() : CHandleRange
x_IncludesPlus() : CHandleRange
x_IncSeg() : CSeqVector_CI
x_Indent() : CTextItem
x_IndentLine() : CDebugDumpFormatterText
x_IndexAnnotTSE() : CTSE_Info, CDataSource
x_IndexAnnotTSEs() : CDataSource
x_IndexBioseq() : CTSE_Info, CTSE_ScopeInfo
x_IndexBioseq_set() : CTSE_Info
x_IndexSeqTSE() : CTSE_Info, CDataSource
x_IndexTSE() : CDataSource_ScopeInfo, CDataSource
x_Info() : CDebugDumpViewer, CGFFReader, CGff3Reader
x_Init() : CThreadPool_Impl, CChangeSeqFeatCommand, CMemStore, oligofar::CColorTwoBase, oligofar::CNcbipnaBase, CCgiTunnel2Grid, CCgi2RCgiApp, CGuideTreeCalc, CGuideTree, CMassArray, CSequenceDataTester, CString2Args, CThreadPool_Task, CTar, CReferenceItem, CBioseqContext, CAlnMix, CAlnMap, CAnnotTypes_CI, CSeq_id, CSiteList, CBondList, CFeatList, CSeq_align_Mapper_Base, CwxTableListCtrl, CSplitter, CMapItem, CMapControl, CTaxTreeDS_ObjMgr, CFeatureTypesBrowser, CSimpleScoringMethod, CQualityScoringMethod, CAlignDataSource, CAnnotCompare_AlignDS, CAlnSpanVertModel, CAlignedFeatureGraph, CGlDisplayList, CSelectionEvent, CDataMiningPanel, CSQLITE_Blob, CTempString, CTimeSpan, CTime, CTlsBase, CNcbiRegistry, CFileLock, CException, CDll, CDiagCollectGuard, CSafeStaticRef< T >, CSafeStaticPtr< T >, CAutoInitRef< T >, CAutoInitPtr< T >, CStringOrBlobStorageReader, CStringOrBlobStorageWriter, CCgiRequest, CCgiUserAgent, CCgiException, CMultiAligner, SDataLoaderConfig, CBlastTracebackSearch, CRemoteBlast, CBlastPrelimSearch, CSearchResultSet, CBl2Seq, CCompartmentAccessor< THit >, CSplignFormatter
x_Init_wxApplication() : CNCBIwxApplication
x_InitAlign() : CSeq_loc_Mapper_Base
x_InitAlignDS() : CGuideTreeCalc
x_InitAligner() : CMultiAligner
x_InitAlignKeys() : CSeq_annot_Info
x_InitAlignList() : CSeq_annot_Info
x_InitAnnotKeys() : CSeq_annot_Info
x_InitAnnotList() : CwxAnnotConfigDlg, CSeq_annot_Info, CAnnotConfigDlg
x_InitAppData() : CBlastHitMatrixCGIApplication
x_InitAppJobDispatcher() : CDemoTableCtrlApp, CDemoApp, CDemoFeatTableApp, CDemoAlignTableApp, CFrameworkDemoApp, CGBenchApp, CwxNCBIApp
x_InitApplicationData() : CBlastDBCmdApp
x_InitBasic() : CElementaryMatching
x_InitBioseq_Info() : CScope_Impl
x_InitBitmaps() : CDockMarkerWindow
x_InitBlastDatabaseDataLoader() : TestUtil::CBlastOM, CBlastScopeSource
x_InitBlastDb() : CBlastDbMetadata
x_InitCDB() : CDB_Exception
x_InitColorspace() : oligofar::CQuery
x_InitColumn() : CMultiAligner
x_InitCommonParserVars() : CNcbiTestApplication
x_InitConnection() : CId2FetchApp, CId2Reader
x_InitCurrentWidget() : CSelectionPanel, CDataMiningPanel
x_InitData() : SDiagMessage
x_InitDatabases() : CNetBLASTUIDataSource
x_InitDataSourceTypes() : CUIDataSourceService
x_InitDBsInParams() : CBLASTToolManagerBase
x_InitDefaultDataSources() : CUIDataSourceService
x_InitDefline() : CShowBlastDefline
x_InitDeflineTable() : CShowBlastDefline
x_InitDeltaMap() : CAlignMarkHandler
x_InitErrCode() : CObjectException, CException
x_InitFeatDataInfo() : CSeqFeatData
x_InitFeatKeys() : CSeq_annot_Info
x_InitFeatList() : CSeq_annot_Info
x_InitFeatTable() : CSeq_annot_Info
x_InitFeatTableKeys() : CSeq_annot_Info
x_InitFeatTypes() : CFeatureCreateDialog
x_InitFeature_Recursive() : CGeneModelTrack
x_InitFilePools() : CNCBlobStorage
x_InitFilteringVector() : CElementaryMatching
x_InitFsaTable() : CTrans_table
x_InitFsaTransl() : CTrans_table
x_InitGBenchService() : CGBenchApplication
x_InitGenbankDataLoader() : TestUtil::CBlastOM, CBlastScopeSource
x_InitGeneticCodesCombo() : CBLASTSearchParamsPanel
x_InitGraphKeys() : CSeq_annot_Info
x_InitGraphList() : CSeq_annot_Info
x_InitGuiRegistry() : CGBenchFeedbackAgent, CGBenchApp, CwxNCBIApp
x_InitHTMLActiveArea() : CSeqGlyph
x_Initialize() : CNCMMCentral, CLoadLockBlob_ids, CSeq_entry_I, CSeq_entry_CI, CSeq_annot_CI, CTSE_Info, CAnnot_Collector, CBioseq_CI, CAnnot_CI, CScoreBuilder
x_Initialize0() : CAnnot_Collector
x_InitializeAlign() : CSeq_loc_Mapper_Base
x_InitializeAnnotTypesSet() : SAnnotSelector
x_InitializeBioseq() : CSeq_loc_Mapper
x_InitializeCache() : CSeqVector_CI
x_InitializeFeat() : CSeq_loc_Mapper_Base
x_InitializeLocs() : CSeq_loc_Mapper_Base
x_InitializeQueryInfo() : CPssmEngine
x_InitializeScoreBlock() : CPssmEngine
x_InitializeSeqMap() : CSeq_loc_Mapper
x_InitImplementation() : CFeature_table_reader, CGen_code_table
x_InitIndexTables() : CAnnotType_Index
x_InitInputReader() : CBlastFastaInputSource
x_InitInsertColumn() : CMultiAligner
x_InitInstance() : CNCMMReserve
x_InitItemProperties() : CMapControl
x_InitIterator() : CSparse_CI, CSparseIterator
x_InitLDS() : CSampleLdsApplication
x_InitLoadManagers() : CUIDataSourceService
x_InitLock() : CNCBlobLockHolder
x_InitLocsKeys() : CSeq_annot_Info
x_InitLocsList() : CSeq_annot_Info
x_InitMainFrame() : CWorkbench
x_InitMenuResources() : CSnpTableView, CFeatTableView, CAlignSpanView
x_InitMinitoringStage() : CBlastSearchTask
x_InitNcbi4naTables() : oligofar::CScoreTbl
x_InitNcbi8na() : oligofar::CQuery
x_InitNcbipna() : oligofar::CQuery
x_InitNcbiqna() : oligofar::CQuery
x_InitNucProtBitmaps() : CSeqIdAlignBitmap< TSeqAlignSeqIdVec >
x_InitObjectIndexList() : CTSE_Chunk_Info
x_InitObjectManager() : CBlastHitMatrix
x_InitOtherFeatList() : CFeaturePanel
x_InitPackages() : CGBenchApplication
x_InitParams() : CMultiAlignerOptions, CMultiAligner
x_InitParticipationVector() : CElementaryMatching
x_InitPattern() : CBoyerMooreMatcher
x_InitPort() : CBlastHitMatrix
x_InitPrefetch() : CPrefetchTokenOld_Impl
x_InitProbTbl() : oligofar::CScoreTbl
x_InitProc() : CReferenceItem
x_InitProjectParams() : CMergeAlignmentsToolManager, CGroupAlignmentsToolManager, CAlgoToolManagerBase
x_InitPubSeqConnection() : CId2FetchApp
x_InitQueries() : CRemoteBlast
x_InitRandomizer() : CSeqVector_CI, CSeqVector
x_InitScoreForPhrap() : oligofar::CScoreParam
x_InitScoretbl() : oligofar::CScoreTbl
x_InitSearch() : CSeqDBIsam
x_InitSeg() : CSeqVector_CI
x_InitSegment() : CSparse_CI, CSparseIterator
x_InitSeqDB() : CLocalDbAdapter
x_InitSequenceType() : CSeqVector
x_InitSession() : CCgiContext
x_InitSparse() : CSeq_loc_Mapper_Base
x_InitSpliced() : CSeq_loc_Mapper_Base
x_InitStaticTables() : oligofar::CPermutator8b
x_InitStorage() : CCgiSampleApplication
x_InitSubject() : CPsiBl2Seq
x_InitSubjIdentityTable() : oligofar::CScoreParam
x_InitTable() : CwxChooseSeqDlg
x_InitTexObj() : CGlTexture
x_InitTrackManager() : CFeaturePanel
x_InitTree() : CExtraFeaturePanel, CFeatureCheckPanel
x_InitTreeFeatures() : CGuideTreeCalc
x_InitTreeLabels() : CGuideTree
x_InitWidget() : CDotMatrixView, CAnnotCompareView, CAlignSpanView
x_InitWithDummyData() : CPhyloTreeCGIApplication
x_InitWithRealData() : CPhyloTreeCGIApplication
x_InNB() : CBaseTextOStream, CStyledTextOStream
x_InsertBlock() : CMemStore
x_InsertElement() : CCache< TKey, TValue, THandler, TLock, TSize >
x_InsertInUnnamedGroup() : CMenuItem
x_InsertItem() : CSelectionControl, CSelListModelImpl< Item >, CAlnMultiModel
x_InsertItems() : CSelectionControl
x_InsertPageBreak() : CDebugDumpFormatterText
x_InsertProjectHandle() : CWorkspacePrx
x_InsertSeg() : CSeq_align_Mapper_Base
x_Instance() : CBV_PoolBlockAlloc< BA, Lock >, CInitRegistrar
x_InstantiateNode() : CDockContainer
x_InstantiateNode_AddChildWindows() : CDockContainer
x_InternalUnlockTSE() : CTSE_ScopeInfo_Base
x_InterruptTask() : CTaskProgressReporter
x_Intersecting() : CTranslationGlyph
x_IntersectingStrands() : CHandleRange
x_Intersects() : CRangeCollection< Position >
x_IntersectWith() : CRangeCollection< Position >
x_InvalidateCache() : CSeq_loc
x_InvalidateRows() : CAlnMultiRenderer
x_InvalidateScores() : CSeq_align_Mapper_Base
x_InvertSingleItem() : CSelectionControl
x_IsActiveFin() : CValidError_bioseq
x_IsAllowedStrands() : CContigAssembly
x_IsAllowMismatch() : CSeqSearch
x_IsAmbig() : CFindRSites
x_IsAnyContentType() : CClassTypeStrings
x_IsArtificial() : CValidError_bioseq
x_IsAutoShutdownTime() : CWorkerNodeIdleThread
x_IsBetter() : CDataSource_ScopeInfo, CSeq_id_Mapper
x_IsBioSourceEmpty() : CCleanup_imp
x_IsBlobExistsInCache() : CNCBlobStorage
x_IsChanged() : CSeqMap
x_IsChromosome() : CFeaturePanel
x_IsCitSubPub() : CCleanup_imp
x_IsColoringEnabled() : CHitMatrixGraph
x_IsCommentLine() : CWiggleReader, CGff3Reader
x_IsDeltaLitOnly() : CValidError_bioseq, CBioseqContext
x_IsDescrSameForAllInPartsSet() : CCleanup_imp
x_IsDragging() : CSplitter, CDockManager
x_IsElastic() : CDockContainer
x_IsEmpty() : CNcbiResourceInfo
x_IsEndDesc() : CSeq_entry_Info, CBioseq_Base_Info
x_IsEndNextDesc() : CBioseq_Base_Info
x_IsExcluded() : CSeq_annot_ftable_I, CSeq_annot_ftable_CI
x_IsExpandPattern() : CSeqSearch
x_IsFeatureSuppressed() : CAutoDef
x_IsFilterSelected() : CSnpFilterListDialog
x_IsFiniteState() : CAppTask
x_IsFlagSet() : CNCMessageHandler
x_IsGeneInfoAvailable() : CDisplaySeqalign
x_IsGuarded() : CSyncQueue< Type, Container >
x_IsInGPS() : CBioseqContext
x_IsInNucProt() : CBioseqContext
x_IsInsert() : CSparse_CI, CSparseIterator
x_IsIsland() : CCpGIslands
x_IsItemSelected() : CSelListModelImpl< Item >, CAlnMultiModel
x_IsJobComplete() : CTrackCreatorUI
x_IsJobNeeded() : CDataTrack, CSnpTrack, CLDBlockTrack, CHapmapTrack, CGapTrack, CBinsTrack
x_IsJobRunning() : CScoreCache, CSparseMultiDataSource, CAlnVecMultiDataSource
x_IsJustTopStrand() : CSeqSearch
x_IsLinear() : CAlnMultiDSBuilder
x_IsLineUcscMetaInformation() : CGFFReader
x_IsMasterLineByWindowY() : CAlnMultiPane
x_IsMatch() : CElementaryMatching
x_IsMergeableBioSource() : CCleanup_imp
x_IsMicroRNA() : CValidError_bioseq
x_IsMinusStrand() : CSeq_point, CSeq_interval, CPacked_seqpnt
x_IsMonitored() : CNCBlobStorage, CNCMessageHandler
x_IsMultiArg() : CArgDescriptions
x_IsNewTaskAllowed() : CThreadPool_Impl
x_IsNucInput() : CBLASTToolManagerBase
x_IsNullType() : CClassTypeStrings, CChoiceTypeStrings
x_IsNullWithAttlist() : CClassTypeStrings, CChoiceTypeStrings
x_IsOrgModRequired() : CAutoDef
x_IsOverviewMode() : CSnpTrack, CLDBlockTrack, CHapmapTrack, CGapTrack, CBinsTrack
x_IsPart() : CBioseqContext
x_IsPatchNeeded() : CDataLoaderPatcher
x_IsPolyA() : CAlignGlyph
x_IsPopupShown() : CMessageSlot
x_IsProtein() : CSequenceDataTester
x_IsPseudo() : CAutoDefFeatureClause
x_IsPWAlign() : CAlignGlyph
x_IsQueryHalf() : CCrossAlnPane
x_IsRangeGap() : CValidError_bioseq
x_IsReallyInLRU() : CNCMMDBPage
x_IsRestrictionSet() : CNetSchedule_AccessList
x_IsRoot() : CPhyloTreeNodeGroupper
x_IsSameSeqAnnotDesc() : CValidError_bioseq
x_IsSavedName() : CDataType
x_IsScoringJobRunning() : CSGAlignmentDS
x_IsSeqLettersFit1() : CCrossPanelIR
x_IsSeqLettersFit2() : CCrossPanelIR
x_IsSet() : CSeqDBOIDList
x_IsSetDescr() : CBioseq_set_Info, CBioseq_Info, CBioseq_Base_Info
x_IsSetOldFormat() : SDiagMessage
x_IsSetProp() : CRequestContext
x_IsSpecial() : CRPCClient< TRequest, TReply >
x_IsSpliceSite() : CSeqTextDataSource
x_IsStdStatic() : CSafeStaticPtr_Base
x_IsStdXml() : CObjectOStreamXml, CObjectIStreamXml
x_IsStreamOk() : CNetCacheWriter
x_IsSubSrcRequired() : CAutoDef
x_IsSuitableForPartialFetching() : CBlastTracebackSearch
x_IsUnicodeClientAPI() : CTL_BCPInCmd
x_IsUnique() : CAlignFilter
x_IsUnknownRID() : CRemoteBlast
x_IsUpdatesLocked() : CMapControl
x_IsValid() : CGwasTrackLoadManager, CAnnot_CI, CSeq_loc_CI
x_IsValidChunk() : CAlnVecIterator
x_IsValidMolType() : CBioseq_CI
x_IterateExonParts() : CSeq_loc_Mapper_Base
x_IterateSeqAlignList() : CAppHitFilter
x_JobStopRequested() : CGridCgiApplication
x_Join() : CRegexpUtil
x_Journal() : CGenbankFormatter
x_KillNode() : CWNJobsWatcher
x_KindOfHuge() : IPhyloTreeRenderer
x_LastIntervalChangeBeforeEnd() : CAutoDefFeatureClause_Base
x_LaunchJob() : CSGGenBankDS
x_LaunchMultiThreadedSearch() : CBlastPrelimSearch
x_LaunchProjectLoadingTask() : CProjectTask
x_LaunchTask() : CProjectCmdHandler, CAppExplorerCmdHandler
x_LayerByPos() : CLayeredLayout
x_LayerBySize() : CLayeredLayout
x_Layout() : CPhyloSlantedCladogram, IPhyloTreeRenderer, CPhyloRectCladogram, CPhyloRadial, CPhyloTreePane, CPhyloForce, CAlignedFeatureGraph, CAlnMultiRenderer
x_LayoutColumns() : CAlnMultiRenderer
x_LayoutLabels() : CAxisRenderer
x_Left() : oligofar::CSpacialRanges
x_length() : CTempXStr< _TChar >
x_Less() : CTempString
x_Lim2Seq1() : CCrossPanelIR
x_Lim2Seq2() : CCrossPanelIR
x_LimitCollapsedSelection() : CExpandItem
x_LinkChildFolders() : CGBWorkspace, CGBProjectHandle
x_LinkedLayout() : CAlignedFeatureGraph
x_ListIncludesId() : CSeqDBVol
x_Load() : CTestConfigMediator, CLDBlockJob, CHapmapJob, CGapJob, CBinsJob, CNSJobInfo, CTextPanel, CThemeMediator, CMetaRegistry, CCgiSession
x_LoadAGP() : CFileLoader
x_LoadAlignedSeqFeats() : CAlignmentTrack
x_LoadAlignmentFeats() : CSGAlignmentJob
x_LoadAlignments() : CSGAlignmentJob
x_LoadAlignmentSettings() : CAlignmentTrack
x_LoadAlignSmearSettings() : CAlignmentTrack
x_LoadAnnot() : CTSE_Split_Info, CTSE_Chunk_Info
x_LoadASN() : CTextPanel
x_LoadAsnBinary() : CFileLoader
x_LoadAsnTextOrXml() : CFileLoader
x_LoadAssembly() : CTSE_Split_Info, CTSE_Chunk_Info
x_LoadBioseq() : CTSE_Split_Info, CTSE_Chunk_Info
x_LoadBlastDbDataLoaderConfig() : SDataLoaderConfig
x_LoadBlockBoundaries() : CMultiAligner
x_LoadCHPA() : CGapJob
x_LoadChunk() : CTSE_Split_Info, CTSE_Info_Object, CTSE_Info
x_LoadChunks() : CTSE_Split_Info, CTSE_Info_Object, CTSE_Info
x_LoadConstraints() : CAppHitFilter
x_LoadData() : CSplitDataLoader, CBlastDbDataLoader, CProjectPrx
x_LoadDataLoadersConfig() : SDataLoaderConfig
x_LoadDescr() : CTSE_Split_Info, CTSE_Chunk_Info
x_LoadFasta() : CFileLoader
x_LoadFastA() : CTextPanel
x_LoadFastXML() : CTextPanel
x_LoadFeatProducts() : CSGFeatureJob
x_LoadFeatSettings() : CSeqGraphicConfig
x_LoadFeatures() : CSelectFeatureDlg, CGeneModelFeatJob, CSGFeatureJob
x_LoadFeatureTypes() : CSeqTextJob
x_LoadFile() : CFileLoader
x_LoadFilter() : CSnpFilterUI
x_LoadFirst() : CThemeMediator
x_LoadFlatFile() : CTextPanel
x_LoadFrameContainer() : CDockManager
x_LoadFromRegistry() : CSnpFilterUI
x_LoadFtable() : CLDBlockJob
x_LoadGeneralData() : CGBProjectTool
x_LoadGFF() : CGffLoadTask
x_LoadGff() : CFileLoader
x_LoadGffData() : CGBProjectTool
x_LoadGWAS() : CGapJob
x_LoadHistSettings() : CSeqGraphicConfig
x_LoadIDs() : CAppHitFilter
x_LoadItem() : CODBC_RowResult
x_LoadJobDescriptors() : CNetBLASTUIDataSource
x_LoadLenFa() : CAgpValidateApplication
x_LoadLong() : CWigBufferedLineReader, CBufferedLineReader
x_LoadMatePairSettings() : CAlignmentTrack
x_LoadMessages() : CDiagConsolePanel
x_LoadMPPWAlignSettings() : CAlignmentTrack
x_LoadMultiAlignSettings() : CAlignmentTrack
x_LoadObject() : CSeqMap
x_LoadPackage() : CPkgManager
x_LoadPage() : CSeqDBIsam
x_LoadPkgList() : CAppPackagesDlg
x_LoadProfile_Recursive() : CFeaturePanel
x_LoadProjects() : CProjectTask
x_LoadPWAlignSettings() : CAlignmentTrack
x_LoadRemapData() : CElementaryMatching
x_LoadRepeatMasker() : CFileLoader
x_LoadSeq_entry() : CTSE_Split_Info, CTSE_Chunk_Info
x_LoadSeq_idBlob_idsSet() : CId2ReaderBase
x_LoadSeqIds() : oligofar::CBatch
x_LoadSeqLoc() : CLocationPanel
x_LoadSequence() : CTSE_Split_Info, CTSE_Chunk_Info, CSplign
x_LoadSettings() : CwxSeqTextViewOptions, CSequenceSearchForm, COrfSearchForm, CFeatureSearchForm, CEntrezSearchForm, CCpgSearchForm, CDialog, CSixFramesTransTrack, CSequenceTrack, CSegmentMapTrack, CLayoutTrack, CGraphTrack, CGeneModelTrack, CFeatureTrack, CFeaturePanel, CEpigenomicsTrack, CAlignmentTrack, CwxChooseSeqDlg, CSnpTrack, CHapmapTrack, CGapTrack, CBinsTrack, CNetBLAST_DMSearchForm, CSearchFormBase, CRunToolDlg, CProjectSelectorDlg, COpenViewDlg
x_LoadTemplate() : CHTMLPage
x_LoadTemplateLib() : CHTMLPage
x_LoadTemplateTool() : CUIToolRegistry
x_LoadTempTrackRecursive() : CFeaturePanel
x_LoadTools() : CScoreMethodsDlg
x_LoadTrackSettingsRecursive() : CFeaturePanel
x_LoadTSE() : CLDS_DataLoader
x_LoadUnloadProject() : CProjectTreePanel, CProjectCmdHandler
x_LoadViewSettings() : CViewManagerService
x_LoadWidgetValues() : CwxAnnotConfigDlg, CAnnotConfigDlg
x_LoadWindowLayout() : CGBenchGUI
x_LoadWorkspace() : CProjectService
x_Local2World() : CSeqGlyph
x_Lock() : CSyncQueue< Type, Container >, CTSE_Lock
x_lock : BlastHSPStream
x_LockAndValidate() : CNCBlobLockHolder
x_LockAndWait() : CSyncQueue< Type, Container >
x_LockAndWaitWhileEmpty() : CSyncQueue< Type, Container >
x_LockAndWaitWhileFull() : CSyncQueue< Type, Container >
x_LockInstanceGuard() : CNCBlobStorage
x_LockMatchSet() : CScope_Impl
x_LockTSE() : CTSE_ScopeInfo_Base, CDataSource
x_Locs_AddFeatSubtype() : CAnnotObject_Info
x_Log() : CSQLITE3_Statement, CPipeProcessWatcher
x_LogCompartmentStatus() : CSplignApp
x_LogIfError() : CConn_Streambuf
x_LogTask() : CAppTaskService
x_LookAtArgs() : CCgiSampleApplication
x_LookupFile() : CSeqDBAtlas
x_MainLoop() : oligofar::CSeqScanner
x_MakeAlias() : CWriteDB_Impl
x_MakeAliasName() : CWriteDB_Impl
x_MakeChanges() : CEditAppJob, CAutodefJob
x_MakeChromId() : CWig2tableApplication
x_MakeClusterResidueFrequencies() : CMultiAligner
x_MakeContentMask() : CGBDataLoader
x_MakeFileName() : CWriteDB_File
x_MakeFilenames() : CSeqDBIsam
x_MakeFillerBlocks() : CMultiAligner
x_MakeFreeTDSVersion() : CODBC_Connection
x_MakeFromString() : CDB_Numeric
x_MakeGetAnswer() : CNetScheduleHandler
x_MakeHandle() : CTSE_Handle
x_MakeHandles() : CTSE_Handle
x_MakeItem() : CODBC_RowResult
x_MakeLocalQueryData() : IQueryFactory, CObjMgrFree_QueryFactory, CObjMgr_QueryFactory
x_MakeLogMessage() : CNetScheduleHandler
x_MakeMolinfoDesc() : CPromote
x_MakeNewBioseq() : CPromote
x_MakeNewProtein() : CPromote
x_MakeNewRna() : CPromote
x_MakeObjName() : CDBL_ITDescriptor
x_MakePortMatchScrollValue() : CSeqTextWidget
x_MakeRemoteQueryData() : IQueryFactory, CObjMgrFree_QueryFactory, CObjMgr_QueryFactory
x_MakeStream() : CTracebackTestFixture
x_MakeString() : CWString
x_MakeUniqueItemName() : CProjectPrx
x_MakeUniqueStyleKey() : CSettingsSet
x_MakeUniqueStyleName() : CSettingsSet
x_MakeUTF8String() : CWString
x_MakeVisible() : CSelectionControl, CMapControl
x_MakeVisibleHorz() : CAlnMultiWidget
x_ManageCmdPipeline() : CNCMessageHandler
x_Map() : CSeq_annot_Info, CDataSource
x_Map_PackedInt_Element() : CSeq_loc_Mapper_Base
x_Map_PackedPnt_Element() : CSeq_loc_Mapper_Base
x_MapAnnotObject() : CTSE_Info, CSeq_annot_Info
x_MapChunkByFeatId() : CTSE_Info
x_MapChunkByFeatType() : CTSE_Info
x_MapDataPage() : CSeqDBIsam
x_MapFeatByGene() : CSeq_annot_Info
x_MapFeatById() : CTSE_Info, CSeq_annot_Info
x_MapFeatByLocus() : CTSE_Info
x_MapFeatIds() : CSeq_annot_Info
x_MapInterval() : CSeq_loc_Mapper_Base
x_MaplocComments() : CFlatGatherer
x_MapMask() : CFastaOstream
x_MapMemFiles() : CGeneInfoFileReader
x_MapNextRange() : CSeq_loc_Mapper_Base
x_MapPairToParam() : CDB_ODBC_ConnParams
x_MapSeq_align() : CSeq_loc_Mapper_Base
x_MapSeq_loc() : CSeq_loc_Mapper_Base
x_MapSNP_Table() : CTSE_Info
x_MarkChainFree() : CNCMMReserve
x_MarkCollapsedQueryNode() : CGuideTree
x_MarkItemForErase() : CSelListModelImpl< Item >, CAlnMultiModel
x_MarkListIfEmpty() : CNCMMReserve
x_MarkState() : CAlignMarkHandler
x_Mask() : oligofar::CBitHacks
x_MaskSequence() : CWriteDB_Impl
x_Match() : CSequenceSearchJob, CFeatureSearchJob, CDiagStrErrCodeMatcher, CSeq_id_Mapper, CFeatureSearchJob, CAlignFilter
x_Matches() : CReferenceItem
x_MatchGene() : CAutoDefFeatureClause
x_MatchLimitObject() : CAnnot_Collector
x_MatchLocIndex() : CAnnot_Collector
x_MatchRange() : CAnnot_Collector
x_MaxValueAndCount() : CAnalysisFileLoader
x_MayAcquireForReading() : CRWLock
x_MeasureItem() : CMinPanelContainer
x_MeasureTree() : CPhyloTreeDataSource
x_Medline() : CGenbankFormatter
x_MeetAltSpliceRules() : CAutoDefFeatureClause_Base
x_MeetsEvalueRequirements() : CSeqAlignCmp
x_Merge() : CCleanup_imp, CAlnMixMerger
x_MergeAdjacentAnnots() : CCleanup_imp
x_MergeAlignments() : CMergeAligner
x_MergeAndMovePubs() : CCleanup_imp
x_MergeAttributes() : CGFFReader
x_MergeCandidates() : CMergeVolumes
x_MergeChain() : CNCMMReserve
x_MergeChainIfValid() : CNCMMReserve
x_MergeCitSubs() : CCleanup_imp
x_MergeDifferentSeq() : CAlnGraphic
x_MergeDuplicateBioSources() : CCleanup_imp
x_MergeDuplicatePubs() : CCleanup_imp
x_MergeEqualBioSources() : CFlatGatherer
x_MergeInclusiveSeqalign() : CVecscreen
x_MergeItems() : CMenuItem
x_MergeLowerRankSeqalign() : CVecscreen
x_MergeMultipleDates() : CCleanup_imp
x_MergeObjects() : CViewGraphic, CFeatTableView, CSeqTextView, CMultiAlignView
x_MergeRecords() : CGFFReader
x_MergeSameSeq() : CAlnGraphic
x_MergeSeqalign() : CVecscreen
x_MergeSeqSegments() : CSGSegmentMapJob
x_MergeSite() : CGuiRegistry
x_MergeVolume() : CMergeVolumes
x_MinimizeGaps() : CAlnMixSegments
x_MinimizePub() : CCleanup_imp
x_Minute() : CTimeSpan
x_MkFlags() : oligofar::CReaderFactory
x_Modified() : CCompoundRWRegistry, CTwoLayerRegistry, CCompoundRegistry, CMemoryRegistry, IRegistry, CEnvironmentRegistry
x_ModifyItems() : CProjectServiceTestJob
x_ModifyState() : CwxTreeCtrlEx
x_ModToOrgMod() : CCleanup_imp
x_MonitorError() : CNCBlobStorage
x_MonitorJob() : CNetScheduleHandler
x_MonitorPost() : CNCBlobStorage, CNCMessageHandler
x_MouseInRightMargin() : CTextSelHandler
x_MouseToSeqPos() : CTextSelHandler, CLinearSelHandler, CAlignMarkHandler
x_Move() : CSeqMap_CI_SegmentInfo, CLayoutTrackHandler
x_MoveBlobInCache() : CNCBlobStorage
x_MoveCodingRegionsToNucProtSets() : CCleanup_imp
x_MoveColumn() : CAlnMultiHeaderHandler
x_MoveColumnSeparator() : CAlnMultiHeaderHandler
x_MoveDbxrefs() : CCleanup_imp
x_MoveDescriptor() : CCleanup_imp
x_MoveDragFrame() : CDockManager
x_MoveFeaturesOnPartsToCorrectSeqAnnots() : CCleanup_imp
x_MoveGeneQuals() : CCleanup_imp
x_MoveIdenticalPartDescriptorsToSegSet() : CCleanup_imp
x_MoveMapQualsToGeneMaploc() : CCleanup_imp
x_MoveProjectFolder() : CAppExplorerService
x_MoveSelectionBy() : CSelectionControl, CSelListController< Item >
x_MoveSelLineByPage() : CSelListController< Item >
x_MoveSeparator() : CSplitter
x_MoveToFloatingFrame() : CDockManager
x_MoveTrackDownRecursive() : CLayoutTrackHandler
x_MoveTrackUpRecursive() : CLayoutTrackHandler
x_mRNA_CDS_ToBePlaced() : CAlignedFeatureGraph
x_MultiAlignClusters() : CMultiAligner
x_NameComments() : CFlatGatherer
x_NameHasBadChars() : CLocusItem
x_Ncbipna2Ncbi4na : oligofar::CQueryHash
x_Ncbiqna2Ncbi4na : oligofar::CQueryHash
x_NeedAdjustTime() : CTime
x_NeedModule() : CDiagCompileInfo
x_NeedSNPs() : CAnnot_Collector
x_NeedsTrans() : CBlastQueryFilteredFrames
x_NeedToRefreshCachedDBs() : CNetBLASTUIDataSource
x_NeedToShow() : CTrackContainer
x_NeedUpdate() : CTSE_Info_Object
x_NewConnection() : CId2Reader, CId1Reader
x_NewEmptySet() : CNCMMSizePool
x_NewRecord() : CGFFReader
x_NewSplit() : CSplitter
x_NewWorkspace() : CProjectTask
x_NewWrite() : SDiagMessage
x_Next() : CSeqdesc_CI, CSeqMap_CI, CSeq_descr_CI, CGBUserTypeParent_CI
x_NextBaseCallAtPosition() : oligofar::fourplanes::CHashIterator
x_NextCacheSeg() : CSeqVector_CI
x_NextChunk() : SCigarAlignment
x_NextDesc() : CSeqdesc_CI
x_NextEntry() : CBioseq_CI
x_NextMappingRange() : CSeq_loc_Mapper_Base
x_NextSubTask() : CBlastSearchTask, CCompositeAppTask, CProjectLoadingTask
x_NextTempPriority() : CGuiRegistry
x_NextVisibleColumn() : CAlnMultiHeaderHandler
x_NextVolume() : CBDB_SplitCursor< BDB_SplitStore, BDB_Vol >
x_NodeSize() : IPhyloTreeRenderer
x_NoMoreObjects() : CAnnot_Collector
x_Normalize() : CSeqDB_BitSet, CPhyloRadial, CPhyloForce, CGlDrawScale, CTimeSpan
x_NormalizeMolInfo() : CCleanup_imp
x_NormalizeType() : CAsnElementItem
x_NormalizeTypeName() : CObjectConverter
x_NormToPixels() : CMouseZoomHandler
x_NormToScale() : CMouseZoomHandler, CMinimapHandler
x_NotGreater() : CPhyloTreeNode
x_NotifyChange() : CEditAppJob
x_NotifyDataSource() : CNetBlastJobDescriptor
x_NotifyFolderChange() : CEditAppJob
x_NotifyJobWatcher() : CGridWorkerNode
x_NotifyObservers() : CAppJobEventTranslator, CObservable
x_NotifyObserversNow() : CObservable
x_NotifyWidgetRangeChanged() : CSeqGraphicPane, CAlnSpanWidget
x_NotifyWidgetSelChanged() : CSeqGraphicPane, CAlnSpanWidget
x_npos() : CTempXStr< _TChar >
x_NumericSearch() : CSeqDBIsam
x_Object() : CXmlRetrieveJob
x_OccupyChain() : CNCMMReserve
x_OffsetToInfo() : CGeneInfoFileReader
x_OidOrder() : CSeqDBMapStrategy
x_OkToConsolidate() : CAutoDefFeatureClause_Base
x_OkToConvertToDescriptor() : CCleanup_imp
x_OkToMerge() : CCleanup_imp
x_OldWrite() : SDiagMessage
x_OnAddFilenames() : CMultiFileInput
x_OnAddLevels() : CTableSortMultiChoice
x_OnAllJobsFinished() : CTrackContainer, CAllOtherFeaturesTrack
x_OnAnnotClick() : CAnnotConfigDlg
x_OnAppJobNotification() : CAnnotCompareDS
x_OnBeginDrag() : CWindowManager
x_OnBrowse() : CPrintOptionsDlg, CSaveImageDlg, CPrintDlg
x_OnBrowserChange() : CSnpFilterUI, CSnpFilterListDialog
x_OnBtnAdd() : CSnpFilterUI
x_OnBtnCopy() : CSnpFilterUI
x_OnBtnDelete() : CSnpFilterUI
x_OnBtnDone() : CSnpFilterUI
x_OnBtnExport() : CSnpFilterUI
x_OnBtnImport() : CSnpFilterUI
x_OnBtnRename() : CSnpFilterUI
x_OnBtnSave() : CSnpFilterUI
x_OnCancel() : CTrackCreatorUI, CSeqTextDlg, CSeqMarkerSetDlg, CHairlineOptionsDlg, CAnnotConfigDlg, CFeatureTypesDlg, CPhyloTreeFilterDlg, CMouseZoomHandler
x_OnCancelFiltering() : CFilterDialog
x_OnChangePan() : CMouseZoomHandler, CMinimapHandler
x_OnChangeScale() : CMouseZoomHandler
x_OnChangeSelRange() : CTextSelHandler, CLinearSelHandler, CAlignMarkHandler
x_OnChangeZoomRectPan() : CMouseZoomHandler, CMinimapHandler
x_OnCheckAll() : CFeatureTypesDlg
x_OnChoice() : CTrackCreatorUI
x_OnChooseFeatTypes() : CAnnotCompareFilterDlg
x_OnClearAll() : CFeatureTypesDlg
x_OnClicked() : CFeatureTypesBrowser
x_OnClickExpandBtn() : CAlnVecRow
x_OnClose() : CConn_Streambuf
x_OnColorIconClicked() : CFeaturePanel
x_OnContentIconClicked() : CGeneModelTrack, CAlignmentTrack
x_OnContextAction() : CFeatTableWidget
x_OnCopy() : CwxTableListCtrl, CSeqTextPane, CObjectListWidget, IClipboardHandler
x_OnCustomSize() : CSaveImageDlg
x_OnDatabaseSelected() : CBLAST_DB_Dialog
x_OnDataSourceUpdated() : CAnnotCompareWidget
x_OnDecoratePopupMenu() : CProjectView
x_OnDecorationIconClicked() : CFeaturePanel
x_OnDeselectAll() : CTrackContainerEvtHandler
x_OnDoubleClick() : CAnnotCompareWidget
x_OnDrag() : CWindowManager
x_OnEdit() : CTrackCreatorUI, CSnpFilterListDialog
x_OnEndAction() : CSeqMarkHandler
x_OnEndDrag() : CWindowManager, CDockManager
x_OnEndMinimap() : CMinimapHandler
x_OnEndPan() : CSeqGraphicPane, CMouseZoomHandler
x_OnEndRectSelect() : CSeqGraphicPane
x_OnEndScale() : CMouseZoomHandler
x_OnEndSelRange() : CTextSelHandler, CLinearSelHandler, CAlignMarkHandler
x_OnEndZoomRect() : CMouseZoomHandler
x_OnEvent() : CCgiApplication
x_OnExit() : CThreadInPool< TRequest >
x_OnFileExit() : CSplineDemoUI, CGl3dDemoUI
x_OnFolderChanged() : CProjectPrx
x_OnGraphContentChanged() : CAlnVecRow
x_OnGraphSizeChanged() : CAlnVecRow
x_OnIconClicked() : CTrackContainer, CSixFramesTransTrack, CSegmentMapTrack, CLayoutTrack, CGraphTrack, CGeneModelTrack, CFeatureTrack, CFeaturePanel, CEpigenomicsTrack, CAlignmentTrack, CSnpTrack, CLDBlockTrack, CHapmapTrack, CGapTrack, CBinsTrack
x_OnIdle() : CFrameworkDemoApp, CGBenchApp, CwxNCBIApp
x_OnInputTypeChanged() : CBLASTSearchOptionsPanel
x_OnItemChanged() : CProjectPrx
x_OnJobCanceled() : CScoreCache, CSearchToolBase
x_OnJobCompleted() : CTrackContainer, CSixFramesTransTrack, CSegmentMapTrack, CGraphTrack, CGeneModelTrack, CFeatureTrack, CEpigenomicsTrack, CDataTrack, CAlignmentTrack, CScoreCache, CFeatureGraph, CSnpTrack, CLDBlockTrack, CHapmapTrack, CGapTrack, CBinsTrack, CSearchToolBase
x_OnJobDescrChanged() : CNetBLASTUIDataSource
x_OnJobFailed() : CDataTrack, CScoreCache, CFeatureGraph, CSnpTrack, CLDBlockTrack, CHapmapTrack, CGapTrack, CBinsTrack, CSearchToolBase
x_OnJobNotification() : CFeatTableDS
x_OnJobProgress() : CScoreCache, CSparseMultiDataSource, CAlnVecMultiDataSource
x_OnJobProgressNotify() : CAppJobDispatcher
x_OnJobStarted() : CAppJobDispatcher
x_OnJobStateChanged() : CAppJobDispatcher
x_OnJobStateChangedEvent() : CAppJobDispatcher
x_OnJobStateChangedNotify() : CAppJobDispatcher
x_OnJobStatusChange() : CSchedulerEngine
x_OnKeyDown() : IPhyloTreeRenderer, CSelListController< Item >
x_OnKeyUp() : IPhyloTreeRenderer
x_OnLabelIconClicked() : CFeaturePanel
x_OnLayoutChanged() : CSeqGlyph, CLayoutTrack
x_OnLayoutIconClicked() : CGeneModelTrack, CFeatureTrack, CFeaturePanel, CAlignmentTrack
x_OnLayoutPolicyChanged() : CFeatureTrack, CAlignmentTrack
x_OnLeftDown() : CSelListController< Item >
x_OnLeftUp() : CSelListController< Item >
x_OnLockAcquired() : CRWLockHolder
x_OnLockReleased() : CRWLockHolder
x_OnLockValidated() : CNCBlobLockHolder
x_OnMotion() : CSelListController< Item >
x_OnMouseDrag() : IPhyloTreeRenderer
x_OnMouseMove() : CTextSelHandler, IPhyloTreeRenderer
x_OnMousePush() : IPhyloTreeRenderer
x_OnMouseRelease() : IPhyloTreeRenderer
x_OnNBEnd() : CDrawTextOStream, CStyledTextOStream, CCalcTextPosOStream
x_OnNBStart() : CStyledTextOStream, CCalcTextPosOStream
x_OnNewItem() : CDiagConsoleList
x_OnNoProduct() : CFilterDialog
x_OnOK() : CPrintOptionsDlg, CTrackCreatorUI, CSeqTextDlg, CHairlineOptionsDlg, CAnnotConfigDlg, CFeatureTypesDlg, CPhyloTreeFilterDlg, CSaveImageDlg, CPrintDlg
x_OnOpChange() : CTextSelHandler, CLinearSelHandler
x_OnOptions() : CPrintDlg
x_OnPan() : CSeqGraphicPane
x_OnPaste() : CSeqTextPane, IClipboardHandler
x_OnProjectChanged() : CWorkspaceConstPrx, CProjectService, CProjectPrx, CGBDocument
x_OnProjectFolderProperties() : CAppExplorerService
x_OnProjectItemProperties() : CAppExplorerService
x_OnProjectProperties() : CAppExplorerService
x_OnRequestStatusChange() : CThreadPoolEngine
x_OnResetAll() : CTextSelHandler, CLinearSelHandler, CAlignMarkHandler
x_OnResize() : CAlnMultiWidget
x_OnRevertSelection() : CTrackContainerEvtHandler
x_OnRowMouseEvent() : CAlnMultiPane
x_OnRowSelect() : CAnnotCompareWidget
x_OnScoreIconClicked() : CAlignmentTrack
x_OnScrollX() : CSeqTextWidget, CGlWidgetBase
x_OnScrollY() : CSeqTextWidget, CGlWidgetBase
x_OnSelectAll() : CTrackContainerEvtHandler
x_OnSelectCursor() : CTextSelHandler, IPhyloTreeRenderer, CHitMatrixGraph, CMouseZoomHandler, CMinimapHandler, CLinearSelHandler, CAlnMultiHeaderHandler, CAlignMarkHandler
x_OnSelectFile() : CPrintDlg
x_OnSelectFormat() : CPrintDlg
x_OnSelectionChanged() : CwxChooseSeqDlg
x_OnSelectItem() : CGroupMapWidget
x_OnSelectPaper() : CPrintOptionsDlg
x_OnSelectPrint() : CPrintDlg
x_OnSet() : CSeqMarkerSetDlg
x_OnSetSelection() : CSnpTableView, CViewGraphic, CFeatTableView, CTextView, CSeqTextView, CPhyTreeView, CMultiAlignView, CMPCrossAlignView, CDotMatrixView, CCrossAlignView, CAnnotCompareView, CAlignSpanView, CProjectView
x_OnSettingsIconClicked() : CGraphTrack, CEpigenomicsTrack
x_OnShowPopup() : CSeqTextPane, CPhyloTreePane
x_OnShowPopupMenu() : CProjectView
x_OnSignal_OnThread() : CSchedulerEngine
x_OnSizeIconClicked() : CFeaturePanel
x_OnStartSel() : CTextSelHandler, CLinearSelHandler, CAlignMarkHandler
x_OnStatusUpdate() : CAppTaskService
x_OnStep() : CPhyloTreeNodeGroupper, IPhyloTreeFilter, CPhyloTreeSorter, CPhyloTreeRectCalculator, CPhyloTreeCalculator, IPhyloTreeVisitor
x_OnStepDown() : CPhyloTreeNodeGroupper, CPhyloTreeCalculator, IPhyloTreeVisitor
x_OnStepLeft() : CPhyloTreeNodeGroupper, CPhyloTreeCalculator, IPhyloTreeVisitor
x_OnStepRight() : CPhyloTreeNodeGroupper, CPhyloTreeCalculator, IPhyloTreeVisitor
x_OnSubjInputTypeChanged() : CBLASTSearchOptionsPanel
x_OnTaskCanceled() : CAppTaskService
x_OnToggleControlPoints() : CSplineDemoUI
x_OnToggleGroup() : CGroupMapWidget
x_OnToggleLines() : CSplineDemoUI
x_OnTogglePoints() : CSplineDemoUI
x_OnToggleTrack() : CTrackContainerEvtHandler
x_OnToolSelected() : CRunToolDlg
x_OnTopObjectFound() : CAsnLoadJob
x_OnUpdate() : CPhyloTreeFilterDlg
x_OnUpdateEvent() : CObservable
x_OnWakeUp() : CAppJobTask
x_OnWakeUpSignal() : CAppTaskService
x_OnWidgetGotFocus() : CTextView
x_OnWidgetLostFocus() : CTextView
x_OnWidgetPositionChanged() : CTextView
x_OnWidgetRangeChanged() : CProjectView
x_OnWidgetSelChanged() : CProjectView
x_OnWorkspaceChanged() : CWorkspacePrx, CProjectService
x_OnWorkspaceFolderChanged() : CWorkspacePrx
x_OnWorkspaceFolderProperties() : CAppExplorerService
x_OnWorkspaceProperties() : CAppExplorerService
x_OnXRotChanged() : CGl3dDemoUI
x_OnYRotChanged() : CGl3dDemoUI
x_OnZoom() : CMouseZoomHandler
x_OnZRotChanged() : CGl3dDemoUI
x_Open() : SourceFile, CSeqDBGiMask, CArg_OutputFile, CArg_InputFile, CTar, CBDB_RawFile, CBDB_Env, CMemoryFileMap
x_Open_SetViewport() : CGlPane
x_OpenAllColumns() : CSeqDBVol
x_OpenBlob() : CSQLITE_Blob
x_OpenDataSources() : CUIDataSourceService
x_OpenDataStream() : CProcessor_ID2
x_OpenDB() : CLDS_Manager
x_OpenDefaultView() : CProjectService
x_OpenIndexDB() : CNCBlobStorage
x_OpenIStream() : CCleanupApp, CAsn2FlatApp, CAsn2FastaApp, CAnnotWriterApp
x_OpenMask() : CMaskFromFasta, CFastaReader
x_OpenOrtho() : CGlPane
x_OpenPixels() : CGlPane
x_OpenProjects() : CProjectTask
x_OpenWorkspace() : CProjectTask
x_OptimizeSeq_loc() : CSeq_loc_Mapper_Base
x_OptimizeStatusMatrix() : CQueueDataBase
x_Organelle() : CEmblFormatter
x_OrganelleName() : CDeflineGenerator
x_OrganisClassification() : CEmblFormatter
x_OrganismSource() : CEmblFormatter
x_OrgModToSubtype() : CCleanup_imp
x_OrientAlign() : CContigAssembly
x_OutOfBounds() : CSeqDBIsam
x_OutputSeq() : CDisplaySeqalign
x_Overhead() : CWriteDB_IndexFile
x_Pack() : CSeqConvert_imp
x_PackElementIndex() : CCache< TKey, TValue, THandler, TLock, TSize >
x_PackName() : CTar
x_PackNewAmbig() : CAmbigDataBuilder
x_PackOldAmbig() : CAmbigDataBuilder
x_Pad() : CFlatItemFormatter
x_PairedReads() : oligofar::CFastqFileReader, oligofar::CSolexaFileReader
x_Pan() : CGl3dWindow, CSplineWindow, CGl3dWindow
x_ParamMatrix() : CCurveBezier
x_Parent2Local() : CSeqGlyph
x_ParentAttach() : CSeq_annot_SNP_Info, CSeq_entry_Info, CSeq_annot_Info, CBioseq_set_Info, CBioseq_Info, CBioseq_Base_Info
x_ParentDetach() : CSeq_annot_SNP_Info, CSeq_entry_Info, CSeq_annot_Info, CBioseq_set_Info, CBioseq_Info, CBioseq_Base_Info
x_Parse() : CDiagStrErrCodeMatcher, CCgiUserAgent
x_ParseAlignRecord() : CGFFReader
x_ParseAndPlace() : CGFFReader
x_ParseBlobKey() : CNetCacheKey
x_ParseBrowserLine() : CReaderBase
x_ParseBrowserLineToSeqEntry() : CGff3Reader
x_ParseCodeBreak() : CCleanup_imp
x_ParseConfigLine() : CSplitQueryTestFixture
x_ParseDateComment() : CGFFReader
x_ParseExtraArgs() : SDiagMessage
x_ParseFeatRecord() : CGFFReader
x_ParseFeature() : CMicroArrayReader
x_ParseFeatureInterval() : CGFFReader
x_ParseFeatureTableLine() : CFeature_table_reader_imp
x_ParseFilteringAlgorithmSpec() : CMaskingFmtSpecHelper
x_ParseGraphData() : CWiggleReader
x_ParseHeader() : oligofar::CGuideSamFile
x_ParseLocation() : CSplitParser
x_ParseOptionsString() : CBlastArgs
x_ParsePAXHeader() : CTar
x_ParseStructuredComment() : CGFFReader
x_ParseTags() : CNetScheduleHandler, CJob
x_ParseTimestampParam() : CNCBlobStorage
x_ParseToken() : CCgiUserAgent
x_ParseTrackData() : CWiggleReader
x_ParseTrackLine() : CReaderBase, CMicroArrayReader
x_ParseTrackLineToSeqEntry() : CGff3Reader
x_ParseTrnaString() : CFeature_table_reader_imp
x_ParseTypeComment() : CGFFReader
x_ParseV2Attributes() : CGFFReader
x_ParseV3Attributes() : CGFFReader
x_PartialDeserialize() : CBlastTabular
x_PartialSerialize() : CBlastTabular, CAlignShadow
x_Paste() : CAppExplorerService
x_PasteItem() : CAppExplorerService
x_PasteProjectFolder() : CAppExplorerService
x_PasteProjectItem() : CAppExplorerService
x_PatchLock() : CDataLoaderPatcher
x_PatchLockSet() : CDataLoaderPatcher
x_PerformCheckPointNoLock() : CBDB_Cache
x_Pick() : CSeqDBMapStrategy
x_PidLock() : CBDB_Cache
x_PlaceAlignment() : CGFFReader
x_PlaceCluster() : CAlignedFeatureGraph
x_PlaceFeature() : CGFFReader, CAlignedFeatureGraph
x_PlaceSeq() : CGFFReader
x_PollEngines() : CAppJobDispatcher
x_PollUntilDone() : CRemoteBlast
x_Pop() : CSeqMap_CI
x_Pop_NonBlocking() : CSyncQueue< Type, Container >
x_PopEntry() : CBioseq_CI
x_PopEvtHandler() : CGBenchGUI
x_PopStackPath() : CObjectStack
x_PopulateBioseq_HandleSet() : CScope_Impl
x_PopulateRows() : CAlnSpanVertModel
x_PopulateTree() : CTaxTreeBrowser
x_PostAttachToProject() : CDotMatrixView, CCrossAlignView, CAnnotCompareView, CAlignSpanView, CProjectView
x_PostCheck() : CArgDescriptions
x_PostProcess() : CPhyloTreeCGIApplication, CGlCgiImageApplication
x_PostUpdateEvent() : CObservable
x_PPos : CConn_Streambuf, CRWStreambuf
x_PreAttachToProject() : CDotMatrixView, CCrossAlignView, CAnnotCompareView, CAlignSpanView, CProjectView
x_PreCheck() : CArgDescriptions
x_PreCreateSparseDataSource() : CAlnMultiDSBuilder
x_PredictAGSites : CAntigenic
x_PredictRegions() : CCoiledCoil
x_PredictSignalSeq : CSignalSeq
x_PreferredDescrHeight() : CMapItem
x_PreferredLabelHeight() : CMapItem
x_PreferredSeparatorHeight() : CMapItem, CGroupMapWidget::CGroupItem
x_PrefetchDesc() : CBioseq_Base_Info
x_Prepare() : CSQLITE_Statement
x_PrepareBlastQueryStructures() : CSplitQueryTestFixture
x_PrepareMenu() : CSnpTableWidget
x_PrepareProjectItem() : CBLASTSeqToolJob, CNetBlastLoadingJob, CDataLoadingAppJob
x_PrepareSearch() : CSearchJobBase
x_PrepareSockStream() : CNCMessageHandler
x_PrepFilePoolsToDelete() : CNCBlobStorage
x_PreProcess() : CPhyloTreeCGIApplication, CAlnMultiCGIApplication, CCgiFontTestApp, CBlastHitMatrix, CGlCgiImageApplication
x_PreprocessValues() : CWig2tableApplication
x_PreserveDestinationLocs() : CSeq_loc_Mapper_Base
x_PreserveNormalSize() : CSplitter
x_Prev() : CSeqMap_CI
x_PrevCacheSeg() : CSeqVector_CI
x_Primitive() : CXmlRetrieveJob
x_Print() : CSeqDB_FilterTree, CDiagStrErrCodeMatcher
x_PrintAliasesAsXml() : CArgDescriptions
x_PrintAlignmentLength() : CBlastTabularInfo
x_PrintBegin() : CHTMLOpenElement
x_PrintBitScore() : CBlastTabularInfo
x_PrintBlastDatabaseInformation() : CBlastDBCmdApp
x_PrintClustal() : CMultiAlnPrinter
x_PrintComment() : CArgDescriptions
x_PrintDefLine() : CDisplaySeqalign
x_PrintDynamicFeatures() : CDisplaySeqalign
x_PrintEvalue() : CBlastTabularInfo
x_PrintFastaPlusGaps() : CMultiAlnPrinter
x_PrintFeatures() : CDisplaySeqalign
x_PrintField() : CBlastTabularInfo
x_PrintFieldNames() : CBlastTabularInfo
x_PrintFrames() : CBlastTabularInfo
x_PrintGapOpenings() : CBlastTabularInfo
x_PrintGaps() : CBlastTabularInfo
x_PrintItems() : CProjectServiceTestJob
x_PrintJobStat() : CQueue
x_PrintLine() : CPdf
x_PrintMatrix() : oligofar::TAligner_SW< CQuery, CSubject >
x_PrintMessage() : CDiagContext
x_PrintMismatches() : CBlastTabularInfo
x_PrintNewickTree() : CGuideTree
x_PrintNexus() : CMultiAlnPrinter
x_PrintNumIdentical() : CBlastTabularInfo
x_PrintNumPositives() : CBlastTabularInfo
x_PrintOneQueryFooter() : CBlastFormat
x_PrintPatterns() : CAgpValidateReader
x_PrintPercentIdentical() : CBlastTabularInfo
x_PrintPercentPositives() : CBlastTabularInfo
x_PrintPhylipInterleaved() : CMultiAlnPrinter
x_PrintPhylipSequential() : CMultiAlnPrinter
x_PrintPolygon() : CPdf
x_PrintQueryAccession() : CBlastTabularInfo
x_PrintQueryAccessionVersion() : CBlastTabularInfo
x_PrintQueryEnd() : CBlastTabularInfo
x_PrintQueryFrame() : CBlastTabularInfo
x_PrintQueryGi() : CBlastTabularInfo
x_PrintQuerySeq() : CBlastTabularInfo
x_PrintQuerySeqId() : CBlastTabularInfo
x_PrintQueryStart() : CBlastTabularInfo
x_PrintScore() : CBlastTabularInfo
x_PrintServerStats() : CNetCacheServer
x_PrintShortJobStat() : CQueue
x_PrintStructuredReport() : CBlastFormat
x_PrintSubjectAccession() : CBlastTabularInfo
x_PrintSubjectAccessionVersion() : CBlastTabularInfo
x_PrintSubjectAllAccessions() : CBlastTabularInfo
x_PrintSubjectAllGis() : CBlastTabularInfo
x_PrintSubjectAllSeqIds() : CBlastTabularInfo
x_PrintSubjectEnd() : CBlastTabularInfo
x_PrintSubjectFrame() : CBlastTabularInfo
x_PrintSubjectGi() : CBlastTabularInfo
x_PrintSubjectSeq() : CBlastTabularInfo
x_PrintSubjectSeqId() : CBlastTabularInfo
x_PrintSubjectStart() : CBlastTabularInfo
x_PrintTabularReport() : CBlastFormat
x_PrintTemplate() : CHTMLPage
x_PrintText() : CPageHandler, CPdf
x_PrintTo() : CPdfObject
x_PrintTop() : CAlnGraphic
x_PrintTotals() : CAgpValidateReader
x_PrivateFunc() : CMyClass
x_ProcessAlign() : CAnnotObject_Info
x_ProcessAuth() : CWNCTConnectionHandler
x_ProcessComparison() : CXcompareAnnotsApplication
x_ProcessData() : CId2FetchApp
x_ProcessDenseg() : CPsiBlastInputData
x_ProcessDownstream() : CwxTreeCtrlEx
x_ProcessEntry() : CTar
x_ProcessFeat() : CAnnotObject_Info
x_ProcessGetBlob() : CId2ReaderBase
x_ProcessGetBlobId() : CId2ReaderBase
x_ProcessGetBlobSeqIds() : CId2ReaderBase
x_ProcessGetChunk() : CId2ReaderBase
x_ProcessGetSeqId() : CId2ReaderBase
x_ProcessGetSeqIdSeqId() : CId2ReaderBase
x_ProcessGetSplitInfo() : CId2ReaderBase
x_ProcessGetStringSeqId() : CId2ReaderBase
x_ProcessGraph() : CAnnotObject_Info
x_ProcessInputData() : CMakeBlastDBApp
x_ProcessInputStream() : CCgiRequest
x_ProcessLandMarkFeatures() : CGeneModelFeatJob
x_ProcessLocation() : CHandleRangeMap, CSeq_loc_CI
x_ProcessMappingRange() : CXcompareAnnotsApplication
x_ProcessMappingRanges() : CXcompareAnnotsApplication
x_ProcessMaskData() : CMakeBlastDBApp
x_ProcessOneOption() : CRemoteBlast, CBlastOptionsBuilder
x_ProcessOptions() : CRemoteBlast, CBlastOptionsBuilder
x_ProcessPacket() : CId2ReaderBase
x_ProcessPair() : CSplignApp, CCompartApp
x_ProcessQueryString() : CCgiRequest
x_ProcessQueue() : CWNCTConnectionHandler
x_ProcessReply() : CId2ReaderBase
x_ProcessRequest() : CId2FetchApp, CId2ReaderBase, CWNCTConnectionHandler
x_ProcessResponse() : CRADispatcherClient
x_ProcessResult() : CTextDataSource
x_ProcessResultInternal() : CTL_Connection
x_ProcessSearchRequest() : CBlastDBCmdApp
x_ProcessSeqAlignSetFromFile() : CXcompareAnnotsApplication
x_ProcessSingleQuery() : CBlastDBCmdApp
x_ProcessSoapRequest() : CSoapServerApplication
x_ProcessTermSegm() : CSplign
x_ProcessTypeNamespace() : CObjectOStreamXml
x_ProcessUpstream() : CwxTreeCtrlEx
x_ProcessWsdlRequest() : CSoapServerApplication
x_ProjectNotSaved() : CProjectTask
x_PromoteCdregion() : CPromote
x_PromoteFeatures() : CPromote
x_PromoteMergeableSource() : CCleanup_imp
x_PromotePub() : CPromote
x_PromoteRna() : CPromote
x_PropagateCommonState() : CPhyloTreeDataSource
x_PSIMatrix2Asn1() : CPssmEngine
x_Publish() : CWriteDB_Impl
x_Pubmed() : CGenbankFormatter
x_PurgeRowListMap() : CAlnMultiRenderer
x_PurgeUnconditional() : CQueueDataBase
x_Push() : CSeqMap_CI, CSeq_annot_CI
x_Push_NonBlocking() : CSyncQueue< Type, Container >
x_Pushback() : CStreamUtils
x_PushEntry() : CBioseq_CI
x_PushEvtHandler() : CGBenchGUI
x_PushExonPart() : CSeq_align_Mapper_Base
x_PushLocToDstMix() : CSeq_loc_Mapper_Base
x_PushMappedRange() : CSeq_loc_Mapper_Base
x_PushRangesToDstMix() : CSeq_loc_Mapper_Base
x_PushSeg() : CSeq_align_Mapper_Base
x_PushSourceRange() : CSeq_loc_Mapper_Base
x_PushStackPath() : CObjectStack
x_Put() : CBDB_LobFile, CNcbiDiag
x_PutChain() : CNCMMChainsPool
x_PutChunk() : CNCMMChunksPool
x_PutIntoFilter() : CDiagSyntaxParser
x_PutSemPred() : CBlockingQueue< TRequest >
x_Query_Op() : CAlignFilter
x_Query_Range() : CAlignFilter
x_QueryBioseqToSSeqLoc() : CBlastFormatterApp
x_QueryMaskingLocationsToNetwork() : CRemoteBlast
x_Random() : CAmbigDataBuilder
x_RangeMapIsEmpty() : SIdAnnotObjs
x_RangemapLoop() : oligofar::CSeqScanner
x_RangeToSeq_loc() : CSeq_loc_Mapper_Base
x_RankAndStore() : CCompartApp
x_Read() : CResultZBtSrcX, CNlmZipReader, CSeq_annot_SNP_Info_Reader, CNcbiRegistry, CCompoundRWRegistry, IRWRegistry
x_ReadAffIdx_NoLock() : CQueue
x_ReadAliasFile() : CSeqDBAliasNode
x_ReadAliasSetFile() : CSeqDBAliasSets
x_ReadAndProcess() : CTar
x_ReadAndProcessFile() : CGeneFileWriter
x_ReadAnnotDesc() : CBinsJob
x_ReadArchive() : CTar
x_ReadAsciiMsa() : CPsiBlastInputClustalW
x_ReadAuthMessage() : CNCMessageHandler
x_ReadBlobChunk() : CNCMessageHandler
x_ReadBlobChunkLength() : CNCMessageHandler
x_ReadBlobCoordsFromCache() : CNCBlobStorage
x_ReadBlobKeyFromCache() : CNCBlobStorage
x_ReadBlobSignature() : CNCMessageHandler
x_ReadBuffer() : CWigBufferedLineReader, CBufferedLineReader
x_ReadBytes() : CSeqDBExtFile
x_ReadCache() : CBDB_ExtBlobStore< TBV >
x_ReadCachedDBs() : CNetBLASTUIDataSource
x_ReadCacheFile() : CMRUCache
x_ReadColumnHeaders() : CAnalysisFile
x_ReadCommand() : CNCMessageHandler
x_ReadConfiguration() : CNcbiTestApplication
x_ReadContig() : CPhrapReader
x_ReadCRLF() : CBufferedSockReaderWriter
x_ReadData() : CAnalysisFileLoader, CProcessor_ID2
x_ReadDataLine() : CAnalysisFile
x_ReadEntryInfo() : CTar
x_ReadExtraGis() : CSeqAlignFilter
x_ReadFastaFile() : CAppNWA
x_ReadFastaSequences() : CGFFReader
x_ReadFastaSetId() : CSplignApp
x_ReadFieldInfo() : CQueue
x_ReadFields() : CSeqDBGiMask, CSeqDBColumn
x_ReadFromFile() : CRpsAuxFile
x_ReadInputHits() : CAppHitFilter
x_ReadIntFixed() : CBlastDbBlob
x_ReadLastBlobCoords() : CNCBlobStorage
x_ReadLine() : CImageIOGif, CSeqDBAliasNode, CWiggleReader, CGff3Reader
x_ReadMetaData() : CSeqDBColumn
x_ReadMultipartHeaders() : CCgiEntryReaderContext
x_ReadOldFormatData() : CPhrapReader
x_ReadOldSequence() : CPhrapReader
x_ReadPssmFromFile() : CPsiBlastTestFixture, CPsiBl2SeqTestFixture
x_ReadQueryBoundsPerChunk() : CSplitQueryTestFixture
x_ReadRaw() : CBlastDbBlob
x_ReadRead() : CPhrapReader
x_ReadRegistryInfo() : CAnalysisFile
x_ReadRepeated() : CTransmissionReader
x_ReadReply() : CId2FetchApp
x_ReadResponseId() : CRADispatcherClient
x_ReadSegSet() : CFastaReader
x_ReadSeqEntriesFromFile() : CPsiBlastTestFixture, CPsiBl2SeqTestFixture
x_ReadSeqLens() : CCompartApp
x_ReadSeqsToAlign() : CFastaReader
x_ReadSplitQueryInfoForTest() : CSplitQueryTestFixture
x_ReadStart() : CTransmissionReader
x_ReadStorageParams() : CNCBlobStorage
x_ReadString() : CBlastDbBlob
x_ReadSwapped() : CSeqDBExtFile
x_ReadTag() : CPhrapReader
x_ReadToolInfo() : CUIToolRegistry
x_ReadURLEncodedEntry() : CCgiEntryReaderContext
x_ReadValues() : CSeqDBAliasNode
x_ReadVarInt() : CBlastDbBlob
x_ReadVectorOfVectorsForTest() : CSplitQueryTestFixture
x_ReadWA() : CPhrapReader
x_ReadZipHeader() : CNlmZipReader
x_RealAdd() : CSeq_annot_EditHandle
x_RealAddId() : CBioseq_EditHandle
x_RealAddSeq_descr() : CSeq_entry_EditHandle, CBioseq_set_EditHandle, CBioseq_EditHandle
x_RealAddSeqdesc() : CSeq_entry_EditHandle, CBioseq_set_EditHandle, CBioseq_EditHandle
x_RealignBlocks() : CMultiAligner
x_RealignSequences() : CMultiAligner
x_reallocate_if_necessary() : CSeqDB::TSequenceRanges
x_RealRemove() : CSeq_graph_Handle, CSeq_feat_EditHandle, CSeq_align_Handle
x_RealRemoveId() : CBioseq_EditHandle
x_RealRemoveSeqdesc() : CSeq_entry_EditHandle, CBioseq_set_EditHandle, CBioseq_EditHandle
x_RealReplace() : CSeq_graph_Handle, CSeq_feat_EditHandle, CSeq_align_Handle
x_RealResetClass() : CBioseq_set_EditHandle
x_RealResetColl() : CBioseq_set_EditHandle
x_RealResetDate() : CBioseq_set_EditHandle
x_RealResetDescr() : CSeq_entry_EditHandle, CBioseq_set_EditHandle, CBioseq_EditHandle
x_RealResetId() : CBioseq_set_EditHandle, CBioseq_EditHandle
x_RealResetInst() : CBioseq_EditHandle
x_RealResetInst_Ext() : CBioseq_EditHandle
x_RealResetInst_Fuzz() : CBioseq_EditHandle
x_RealResetInst_Hist() : CBioseq_EditHandle
x_RealResetInst_Length() : CBioseq_EditHandle
x_RealResetInst_Mol() : CBioseq_EditHandle
x_RealResetInst_Repr() : CBioseq_EditHandle
x_RealResetInst_Seq_data() : CBioseq_EditHandle
x_RealResetInst_Strand() : CBioseq_EditHandle
x_RealResetInst_Topology() : CBioseq_EditHandle
x_RealResetLevel() : CBioseq_set_EditHandle
x_RealResetRelease() : CBioseq_set_EditHandle
x_RealSetClass() : CBioseq_set_EditHandle
x_RealSetColl() : CBioseq_set_EditHandle
x_RealSetDate() : CBioseq_set_EditHandle
x_RealSetDescr() : CSeq_entry_EditHandle, CBioseq_set_EditHandle, CBioseq_EditHandle
x_RealSetId() : CBioseq_set_EditHandle
x_RealSetInst() : CBioseq_EditHandle
x_RealSetInst_Ext() : CBioseq_EditHandle
x_RealSetInst_Fuzz() : CBioseq_EditHandle
x_RealSetInst_Hist() : CBioseq_EditHandle
x_RealSetInst_Length() : CBioseq_EditHandle
x_RealSetInst_Mol() : CBioseq_EditHandle
x_RealSetInst_Repr() : CBioseq_EditHandle
x_RealSetInst_Seq_data() : CBioseq_EditHandle
x_RealSetInst_Strand() : CBioseq_EditHandle
x_RealSetInst_Topology() : CBioseq_EditHandle
x_RealSetLevel() : CBioseq_set_EditHandle
x_RealSetRelease() : CBioseq_set_EditHandle
x_RebuildObjectIndex() : CSnpTableView, CFeatTableView, CMultiAlignView
x_RecalculateOffsets() : CSeqTextPane
x_ReceiveMainBlob() : CId1Reader
x_ReceiveReply() : CId2ReaderBase, CId2Reader, CId1Reader
x_RecurseDescriptorsForMerge() : CCleanup_imp
x_RecurseForDescriptors() : CCleanup_imp
x_RecurseForSeqAnnots() : CCleanup_imp
x_Recycle() : impl::CDriverContext
x_RedrawControls() : CGlWidgetBase, CAlnMultiWidget
x_ReduceStreamCountTo() : CLDS_IStreamCache
x_RefCounterError() : CPackString
x_Reference() : CGenbankFormatter
x_RefillPool() : CNCMMChunksPool
x_Refresh() : CTaxTreeBrowser
x_RefSeqComments() : CFlatGatherer
x_RefTSEMatch() : CSeqMap_CI
x_RegionComments() : CFlatGatherer
x_Register() : CObjFingerprint
x_RegisterAccelerators() : CGBenchGUI, CFrameworkDemoGUI
x_RegisterAliases() : CwxMainFrame
x_RegisterBioObject() : CTSE_Info
x_RegisterClient() : CWindowManager
x_RegisterCommands() : CSnpPackage, CSeqEditPackage, CSeqPackage, CAlignPackage, CGBenchGUI, CFrameworkDemoGUI
x_RegisterExtensionFactories() : CViewManagerService
x_RegisterHandler() : CGlWidgetPane
x_RegisterIcon() : CLayoutTrack
x_RegisterImageAliases() : CFrameworkDemoGUI
x_RegisterImageHandlers() : CwxNCBIApp
x_RegisterLoader() : CObjectManager
x_RegisterStdTracks() : CFeaturePanel
x_RegisterUserTypes() : CGBenchGUI
x_RegReadBool() : CNetCacheServer
x_RegReadInt() : CNetCacheServer
x_RegReadString() : CNetCacheServer
x_RegUnregClient() : SNetScheduleExecuterImpl
x_Rehash() : oligofar::CBatch
x_ReinitFeatureTrack() : CAllOtherFeaturesTrack
x_ReinitSubtracks() : CTrackContainer, CAllOtherFeaturesTrack
x_ReinitTrack() : CTrackContainer
x_Release() : CInitGuard, AutoArray< X, Del >, AutoPtr< X, Del >, CDiagContext_Extra
x_ReleaseAll() : CAnnot_Collector
x_ReleaseAllChains() : CNCMMChainsPool
x_ReleaseAllChunks() : CNCMMChunksPool
x_ReleaseConnection() : CReader
x_ReleaseLastLoadLock() : CDataSource
x_ReleaseLastLock() : CDataSource
x_ReleaseLastTSELock() : CDataSource
x_ReleaseLock() : CNCBlobLockHolder, CYieldingRWLock
x_ReleaseMouse() : CMouseZoomHandler
x_Reload() : CMetaRegistry
x_ReloadIDLists() : CwxChooseSeqDlg
x_ReloadMessages() : CDiagConsoleList
x_Relock() : CTSE_Lock
x_RemapAnnotObject() : CSeq_annot_Info
x_RemapGeneRefs() : CGFFReader
x_Remark() : CGenbankFormatter
x_RemoteBlast() : CRemotePssmSearch, CRemoteSeqSearch
x_Remove() : CDeleteSeqFeatCommand, CObjectIndex
x_RemoveAnnotObjs() : CTSE_Info
x_RemoveAsn2ffGeneratedComments() : CCleanup_imp
x_RemoveChild() : CSplitter
x_RemoveChildren() : CProjectFolderPrx
x_RemoveClient() : CWindowManager
x_RemoveConnection() : CReader
x_RemoveConnectionSlot() : CReader, CId2Reader, CId1Reader, CCacheReader
x_RemoveDescrByType() : CCleanup_imp
x_RemoveDescrForAllInSet() : CCleanup_imp
x_RemoveDuplicatePubsFromBioseqsInSet() : CCleanup_imp
x_RemoveEmptyFeatureAnnots() : CCleanup_imp
x_RemoveEmptyFeatures() : CCleanup_imp
x_RemoveEmptyGenbankDesc() : CCleanup_imp
x_RemoveEmptyPubs() : CCleanup_imp
x_RemoveEmptyTitles() : CCleanup_imp
x_RemoveExtraGis() : CSeqAlignFilter
x_RemoveFileFromList() : CNCFileSystem
x_RemoveFilter() : CSnpFilterUI
x_RemoveFromFolder() : CWorkspacePrx
x_RemoveFromHistory() : CScope_Impl
x_RemoveFromIdMap() : CObjectIndex
x_RemoveFromLRUImpl() : CNCMMDBPage
x_RemoveFromReadGroup() : CQueue
x_RemoveFromRegistry() : CODBCContext, CDBLibContext, CTLibContext
x_RemoveFromSelection() : CTextSelHandler, CLinearSelHandler
x_RemoveGeneXref() : CCleanup_imp
x_RemoveImpSourceFeatures() : CCleanup_imp
x_RemoveIter() : CSyncQueue_ConstAccessGuard< Type, Container >
x_RemoveJob() : CTextDataSource
x_RemoveJobRecord() : CAppJobDispatcher
x_RemoveLastInfoLock() : CScopeInfo_Base
x_RemoveLastLock() : CSeq_id_Info
x_RemoveMarkedGeneXref() : CCleanup_imp
x_RemoveMarkedGeneXrefs() : CCleanup_imp
x_RemoveMultipleTitles() : CCleanup_imp
x_RemoveNucProtSetTitle() : CCleanup_imp
x_RemoveOldestStream() : CLDS_IStreamCache
x_RemoveOptionalFeatures() : CAutoDef
x_RemovePIDXrefs() : CCleanup_imp
x_RemovePosition() : CCpGIslands
x_RemoveProjectFolder() : CAppExplorerService
x_RemoveProjectItem() : CAppExplorerService
x_RemoveProjects() : CProjectTask
x_RemovePseudoProducts() : CCleanup_imp
x_RemovePubMatch() : CCleanup_imp
x_RemoveQuals() : CFeatureItem
x_RemoveSetFromList() : CNCMMSizePool
x_RemoveSiteRefImpFeats() : CCleanup_imp
x_RemoveTags() : CQueue
x_RemoveTaskFromQueue() : CThreadPool_Impl
x_RemoveTaskImpl() : CScheduler_MT
x_RemoveToken() : CAffinityDict
x_RemoveTransaction() : CBDB_RawFile
x_RemoveUnnecessaryGeneXrefs() : CCleanup_imp
x_RemoveView() : CProjectService
x_RemoveWDir() : IRemoteAppRequest_Impl
x_RemoveWorkspaceFolder() : CAppExplorerService
x_Render() : CSeqGraphicPane, CRulerDemoPanel, CGlPaneWidgetChildDemo, CGlInfoWindow, CGl3dWindow, CFontWindow, CCrossAlnPane, CGlInfoWindow, CGuideTree, CBlastHitMatrix, CGLTestWMClient, CGLCanvas, CSeqTextPane, CPhyloSlantedCladogram, IPhyloTreeRenderer, CPhyloRectCladogram, CPhyloRadial, CPhyloTreePane, CPhyloForce, CHitMatrixPane, CAlnMultiRenderer, CAlnMultiPane
x_RenderAdaptiveMargins() : IPhyloTreeRenderer
x_RenderAlign() : CAlnVecRow
x_RenderAlignScores() : CAlnVecRow
x_RenderAlignSegments() : CAlnVecRow
x_RenderAllPosLabels() : CRuler
x_RenderAlnPos() : CAlnVecRow
x_RenderAveragableScores() : CAlignGlyph, CAlnVecRow
x_RenderAxisAndGrid() : CHitMatrixRenderer, CHitMatrixPane
x_RenderBackground() : CRuler
x_RenderBarChart() : CComboChart
x_RenderBottomRuler() : CSeqTextPane
x_RenderBox() : CAlnMultiHeader
x_RenderCodons() : CSeqTextPane
x_RenderCodonTick() : CSeqTextPane
x_RenderConfGraph() : CTraceGraph
x_RenderContainers() : CHitMatrixRenderer, CHitMatrixPane
x_RenderContent() : CSeqTextPane, CSequenceTrack, CLayoutTrack, CGlyphContainer, CPhyloTreePane, CHitMatrixPane, CLDBlockLine
x_RenderContour() : CTraceGraph
x_RenderCurveSegment() : CTraceGraph
x_RenderDescr() : CAlnVecRow
x_RenderEmptyBox() : CAlnVecRow
x_RenderEndPos() : CAlnVecRow
x_RenderEventHandler() : CHitMatrixGraph
x_RenderFeature() : CAlignedFeatureGraph
x_RenderFeatureExtras() : CSeqTextPane
x_RenderFirstRow() : CTTWindow
x_RenderFoundLocations() : CSeqTextPane
x_RenderFrame() : CLayoutTrack
x_RenderGraph() : CAlnVecRow
x_RenderGraphs() : CAlnMultiRenderer
x_RenderHairLineSelections() : CFeaturePanel
x_RenderHeader() : CAlnMultiRenderer
x_RenderHeaderHandler() : CAlnMultiPane
x_RenderHistogram() : CHistogramGraph
x_RenderHits() : CHitMatrixGraph
x_RenderHorzPosLabel() : CRuler
x_RenderIcon() : CLayoutTrack
x_RenderIconExpand() : CAlnVecRow
x_RenderIcons() : CAlnVecRow
x_RenderIconStrand() : CAlnVecRow
x_RenderImage() : CPhyloTreeCGIApplication, CGuideTree, CBlastHitMatrix
x_RenderImageFromCache() : CPhyloTreeCGIApplication
x_RenderInserts() : CAlnVecRow
x_RenderIntensityGraphs() : CTraceGraph
x_RenderItem() : CLegend
x_RenderItems() : CAlnMultiRenderer, CLegend
x_RenderItemsRange() : CAlnMultiRenderer
x_RenderLeftRuler() : CSeqTextPane
x_RenderLine() : IPhyloTreeRenderer
x_RenderLinePlot() : CComboChart
x_RenderMark() : CAlnMultiPane
x_RenderMasterRow() : CAlnMultiRenderer
x_RenderMinimap() : CMinimapHandler
x_RenderMouseZoomHandler() : CPhyloTreePane, CHitMatrixPane
x_RenderMoveMode() : CAlnMultiHeaderHandler
x_RenderNode() : IPhyloTreeRenderer
x_RenderNonAveragableScores() : CAlignGlyph, CAlnVecRow
x_RenderOpSymbol() : CTextSelHandler
x_RenderOriginAndMetric() : CRuler
x_RenderPage() : CPhyloTreeCGIApplication
x_RenderPan() : CMouseZoomHandler
x_RenderPath() : CHitMatrixGraph
x_RenderPercentBarChart() : CComboChart
x_RenderPosLabel() : CRuler
x_RenderProgressBar() : CLayoutTrack
x_RenderProgressPanel() : CAlnMultiPane
x_RenderRange() : CTextSelHandler, CRuler
x_RenderRectSelHandler() : CSeqGraphicPane
x_RenderResizeMode() : CAlnMultiHeaderHandler
x_RenderRow() : CAlnMultiRenderer
x_RenderRuler() : CRulerDemoPanel, CAlnMultiRenderer
x_RenderScale() : CRuler, CMouseZoomHandler
x_RenderSecondRow() : CTTWindow
x_RenderSelectedFeatures() : CTextSelHandler
x_RenderSelection() : IPhyloTreeRenderer, CHitMatrixGraph, CAlnMultiPane
x_RenderSelHandler() : CGlPaneWidgetChildDemo, CSeqTextPane, CPhyloTreePane, CHitMatrixPane
x_RenderSeqEnd() : CAlnVecRow
x_RenderSeqLength() : CAlnVecRow
x_RenderSeqStart() : CAlnVecRow
x_RenderSequence() : CSequenceTextGraph, CSequenceTrack, CAlnVecRow
x_RenderSignalGraph() : CTraceGraph
x_RenderSpline() : IPhyloTreeRenderer
x_RenderStackedBarChart() : CComboChart
x_RenderStartPos() : CAlnVecRow
x_RenderStatusText() : CFeatureGraph
x_RenderStream() : CNSInfoRenderer
x_RenderString() : CNSInfoRenderer
x_RenderText() : CFlatFileHeader, CTextItem, CPlainTextItem, CXmlBaseItem, CInfoItem, CFlatFileTextItem, CFlatFileSeqBlockCollapsed, CFlatFileFeatureCollapsed, CFastaTitleItem, CFastaSeqHdrItem, CFastaSeqBlockItem, CAsnHeaderPrimitive, CAsnHeaderItem, CAsnElementItem, CAsnBlockEndItem, CTraceGraph
x_RenderTextCell() : CAlnVecRow
x_RenderThirdRow() : CTTWindow
x_RenderTitleBar() : CLayoutTrack, CFeaturePanel
x_RenderUnaligned() : CAlnVecRow
x_RenderVertPosLabel() : CRuler
x_RenderView() : CCgiTunnel2Grid, CCgi2RCgiApp
x_RenderXml() : CXmlVersionItem, CXmlValueItem, CXmlOpenTagItem, CXmlDoctypeItem, CXmlCloseTagItem, CXmlClosedBlock, CXmlBaseItem
x_RenderZoomHandler() : CAlnMultiPane
x_RenderZoomRect() : CMouseZoomHandler
x_Replacer() : CSeqFormatter, CBlastDbFormatter
x_ReportAppInfo() : CGBenchApplication
x_ReportConError() : CODBCContext
x_ReportDuplicatePubLabels() : CValidError_bioseq
x_ReportDupOverlapFeaturePair() : CValidError_bioseq
x_ReportError() : CAppJobTask
x_ReportErrors() : CBlastSearchTask
x_ReportException() : CNCMessageHandler
x_ReportInvalidInputData() : CProjectViewBase
x_ReportNewDataConflict() : CScope_Impl
x_ReportTaskFailure() : CAppTaskService
x_ReportToDebugger() : CException
x_ReportUnresolvedIds() : CBuildDatabase
x_ReportVersion() : CGBenchApplication
x_RequestedType() : CSeqdesc_CI
x_RequestToCancel() : CThreadPool_Task
x_RequestUpdate() : CSplitter
x_RerootTree() : CTree
x_Reserve() : CBlastDbBlob
x_Reset() : oligofar::TAligner_SW< CQuery, CSubject >, CGFFReader, CAlnMix, CAlnMixMerger, CSeq_annot_ftable_I, CSeq_annot_ftable_CI, CTlsBase
x_reset_all() : CSeqDB::TSequenceRanges
x_ResetBackup() : CSeqVector_CI
x_ResetBioseq_setId() : CTSE_Info
x_ResetBioseqId() : CTSE_Info
x_ResetCache() : CSeqVector_CI
x_ResetDescr() : CBioseq_set_Info, CBioseq_Info, CBioseq_Base_Info
x_ResetDirtyAnnotIndex() : CTSE_Info_Object, CDataSource
x_ResetDirtyAnnotIndexNoParent() : CTSE_Info_Object, CTSE_Info
x_ResetFields() : CBlastTabularInfo
x_ResetFilterTab() : CSnpFilterUI
x_ResetFlags() : CAlignRangeCollection< TAlnRange >
x_ResetHandler() : CFileDiagHandler
x_ResetLock() : CScopeInfo_Base
x_ResetMenuBar() : CWindowManager
x_ResetMinKey() : CMergeVolumes
x_ResetObjAnnot() : CBioseq_set_Info, CBioseq_Info, CBioseq_Base_Info
x_ResetObjectWidget() : CSelectionPanel
x_ResetOwner() : CThreadPool_Task
x_ResetPosition() : oligofar::fourplanes::CHashIterator
x_ResetQueryDs() : CBl2Seq
x_ResetRowListMap() : CAlnMultiRenderer
x_ResetSelObjects() : CSelectionPanel
x_ResetSeqMap() : CBioseq_Info
x_ResetSequenceData() : CWriteDB_Impl
x_ResetState() : CAppJob, CEditAppJob, CNetBlastMonitoringJob, CNetBlastSubmittingJob, CDataLoadingAppJob
x_ResetSubjectDs() : CBl2Seq
x_ResetTargetChoice() : CSelectionPanel
x_ResetTSE_Lock() : CTSE_ScopeInfo
x_ResetValue() : CBlastOptionsRemote
x_Resize() : CSeqDBBitVector, CSplitter
x_ResizeAllCells() : CSplitter
x_ResizeCache() : CSeqVector_CI
x_ResizeToCell() : CSplitter
x_Resolve() : CSeqMap_CI
x_ResolveFromSource() : CBuildDatabase
x_ResolveGis() : CBuildDatabase
x_ResolveId() : CId1Reader
x_ResolveID() : CGFFReader
x_ResolveLoc() : CGFFReader
x_ResolveNames() : CSeqDBAliasNode
x_ResolveNewID() : CGFFReader
x_ResolveNewSeqName() : CGFFReader
x_ResolveRemoteId() : CBuildDatabase
x_ResolveSegmentLength() : CSeqMap
x_ResolveSegmentPosition() : CSeqMap
x_ResolveSeq_id() : CScope_Impl
x_ResolveSeqName() : CGFFReader
x_RestartSearch() : CDataMiningPanel
x_RestoreAdded() : CTSE_ScopeInfo
x_RestoreAttrs() : CTar
x_RestoreOutputExceptions() : CCgiResponse
x_RestoreViews() : CProjectService
x_Result() : CSocketReaderWriter
x_Results() : CDBL_Connection
x_Results2SeqAlign() : CBl2Seq
x_RetakeCreateLock() : CNCBlobLockHolder
x_RetRegionNonRecent() : CSeqDBAtlas
x_RetrieveBlobAttributes() : CBDB_Cache
x_RetrieveSessionId() : CCgiRequest
x_RetrieveTimeStamp() : CDBAPI_Cache
x_RetSeq() : CSeqDBIter
x_RetSeqBuffer() : CSeqDBImpl
x_ReturnJob() : CGridWorkerNode
x_Reverse() : oligofar::TAligner_SW< CQuery, CSubject >
x_ReverseFuzzLim() : CMappingRange
x_ReverseRangeOrder() : CSeq_loc_Mapper_Base
x_RevokeDataLoader() : CObjectManager
x_Right() : oligofar::CSpacialRanges
x_Rotate() : CGl3dWindow, CSplineWindow, CGl3dWindow
x_RotateDBParts() : CNCBlobStorage
x_Roundup() : CRegionMap
x_Run() : CUIDataSourceTask, CNamedPipeProcessTask, CGBenchApplication, CNCBIwxApplication, CXmlRetrieveJob, CTextRetrieveJob, CFlatFileRetrieveJob, CFlatFeatureRetrieveJob, CFastaRetrieveJob, CAsnRetrieveJob, CEditAppJob, CNetBlastMonitoringJob, CNetBlastSubmittingJob, CAppTask, CProjectTask, CProjectServiceTestTask, CDataLoadingAppJob, CExportDlgTask, COpenViewlDlgTask, CRunToolDlgTask, COpenDlgTask, CMultiAligner, CSplign, CNWAligner, CMMAligner
x_RunAligner() : CInstancedAligner
x_RunBanded() : CSimpleBandedAligner
x_RunBandedGlobal() : CSimpleBandedAligner
x_RunBtm() : CMMAligner
x_RunCleanup() : CInstancedAligner
x_RunCurrentSubTask() : CBlastSearchTask, CCompositeAppTask, CProjectLoadingTask
x_RunFastCGI() : CCgiApplication
x_RunMMGlobal() : CInstancedAligner
x_RunNewJob() : CRemoteAppDispatcher
x_RunOnCompartment() : CSplign
x_RunOnPair() : CAppNWA
x_RunSplign() : CSplignApp
x_RunTerm() : CMMAligner
x_RunTop() : CMMAligner
x_SafeToFinalize() : CDBLibContext, CTLibContext
x_SameTSE() : CTSE_ScopeInfo
x_Save() : CProjectTask
x_SaveAlignmentSettings() : CAlignmentTrack
x_SaveAlignSmearSettings() : CAlignmentTrack
x_SaveBlob() : CDBAPI_CacheIWriter
x_SaveConfig() : CGBenchApplication
x_SaveConfiguration() : CSequenceTrack, CSegmentMapTrack, CGeneModelTrack, CAlignmentTrack
x_SaveContextData() : SDiagMessage
x_SaveDataObject() : CId2FetchApp
x_SaveDefaultScoringMethod() : CSeqGraphicWidget
x_SaveDefaultWindowLayout() : CGBenchGUI
x_SaveFeatSettings() : CSeqGraphicConfig
x_SaveGuiRegistry() : CGBenchFeedbackAgent, CGBenchApp, CwxNCBIApp
x_SaveHistSettings() : CSeqGraphicConfig
x_SaveJobDescriptors() : CNetBLASTUIDataSource
x_SaveMatePairSettings() : CAlignmentTrack
x_SaveMultiAlignSettings() : CAlignmentTrack
x_SaveObjectOffset() : CPdfObjectWriter
x_SaveProfile_Recursive() : CFeaturePanel
x_SavePWAlignSettings() : CAlignmentTrack
x_SaveRemoved() : CTSE_ScopeInfo
x_SaveSettings() : CwxSeqTextViewOptions, CSequenceSearchForm, COrfSearchForm, CFeatureSearchForm, CEntrezSearchForm, CCpgSearchForm, CDialog, CSixFramesTransTrack, CSequenceTrack, CSegmentMapTrack, CLayoutTrack, CGraphTrack, CGeneModelTrack, CFeatureTrack, CFeaturePanel, CEpigenomicsTrack, CAlignmentTrack, CwxChooseSeqDlg, CNetBLAST_DMSearchForm, CSearchFormBase, CRunToolDlg, CProjectSelectorDlg, COpenViewDlg
x_SaveSplitterLayout() : CDockContainer
x_SaveStates() : CSeqGraphicWidget, CGlWidgetBase
x_SaveTrackSettingsRecursive() : CFeaturePanel
x_SaveViewSettings() : CViewManagerService
x_SaveWidgetValues() : CwxAnnotConfigDlg, CAnnotConfigDlg
x_ScaleToFitLimits() : CGlPane
x_ScaleToNorm() : CMouseZoomHandler, CMinimapHandler
x_ScanTotals() : CSeqDBImpl
x_SchedQueueChanged() : CScheduler_MT
x_ScheduleTask_OnThread() : CSchedulerEngine
x_Scope() : CPromote
x_Search() : CElementaryMatching
x_SearchAll() : CAnnot_Collector
x_SearchComponents() : CFeatureSearchJob
x_SearchDataNumeric() : CSeqDBIsam
x_SearchDataNumericMulti() : CSeqDBIsam
x_SearchErrors() : CRemoteBlast
x_SearchFeatures() : CFeatureSearchJob
x_SearchFirstAmbiguousPosition() : oligofar::fourplanes::CHashIterator
x_SearchIndexNumeric() : CSeqDBIsam
x_SearchIndexNumericMulti() : CSeqDBIsam
x_SearchInProgress() : CDataMiningPanel
x_SearchLoc() : CAnnot_Collector
x_SearchMapped() : CAnnot_Collector
x_SearchMaster() : CAnnot_Collector
x_SearchNegativeMulti() : CSeqDBIsam
x_SearchObjects() : CAnnot_Collector
x_SearchRange() : CAnnot_Collector
x_SearchSegments() : CAnnot_Collector
x_SearchSequence() : CSequenceSearchJob
x_SearchTSE() : CAnnot_Collector
x_SearchTSE2() : CAnnot_Collector
x_Second() : CTimeSpan
x_SecondRowFits() : CAlnMixMerger
x_SeekCURR() : CMemStore
x_SeekHEAD() : CMemStore
x_SeekTAIL() : CMemStore
x_Select() : CSeqMap_CI, CSeq_entry_Info
x_SelectAll() : CSelectionControl
x_SelectBaseStep() : CCrossPanelIR
x_SelectBestTaxid() : CTaxIdSet
x_SelectByPoint() : IPhyloTreeRenderer, CHitMatrixGraph
x_SelectByRect() : CSeqGraphicPane, IPhyloTreeRenderer, CHitMatrixGraph
x_SelectClients() : CWindowsDlg
x_SelectCompatibleInputObjects() : CCreateNeedlemanWunschToolManager, CAutodefToolManager, CWindowMaskerTool, CCleanupTool, CTreeBuilderTool, CSplignTool, CMergeAlignmentsToolManager, CGroupAlignmentsToolManager, CFindOverlapTool, CCreateGeneModelToolManager, CCleanupAlignmentsToolManager, CBLASTToolManagerBase
x_SelectFocusedItem() : CSelectionControl, CSelListController< Item >
x_SelectGraph() : CwxHistogramDlg
x_SelectionUpdated() : CFilterDialog
x_SelectItem() : CSelectionControl, CSelListModelImpl< Item >, CAlnMultiModel
x_SelectItems() : CSelectionControl
x_SelectManager() : COpenDlg
x_SelectPaper() : CPrintOptionsDlg
x_SelectProjectByParams() : CProjectSelectorPanel
x_SelectRows() : CMultiAlignView
x_SelectSeq() : CScope_Impl
x_SelectSet() : CScope_Impl
x_SelectSingleItem() : CSelectionControl
x_SelectTo() : CSelectionControl, CSelListController< Item >
x_SelfCleanup() : CSafeStaticRef< T >, CSafeStaticPtr< T >, CAutoInitRef< T >, CAutoInitPtr< T >
x_Send() : CStatement
x_SendCommand() : CSeqTextPane, CPhyloTreePane, CAlnMultiPane
x_SendData() : CODBC_Connection, CDBL_Connection, CTL_CmdBase, CTL_Connection
x_SendDataChangedEvent() : CEditCommand
x_SendJobCmdWaitResponse() : SNetScheduleAPIImpl
x_SendPacket() : CId2ReaderBase, CId2Reader
x_SendRequest() : CId1Reader, CRemoteBlast
x_SendRequestPacket() : CId2FetchApp
x_SendSelectionEvent() : CSelectionControl, CMapControl
x_SeparateByTaxId() : CAlignGroup
x_SeparateObjects() : CLayeredLayout
x_Seq2Lim1() : CCrossPanelIR
x_Seq2Lim2() : CCrossPanelIR
x_SeqDescMatch() : CCleanup_imp
x_SeqDragPos() : CSeqMarkHandler
x_SeqIdToGiNumber() : CValidError_feat, CCleanupApp, CAsn2FlatApp, CAsn2FastaApp
x_SeqLoc_To_DeltaExt() : CBioseq
x_SeqToProduct() : CCdsGlyph
x_Serialize() : CFeatureCheckDialog
x_SerializeBitVector() : CNetScheduleHandler, CBDB_BvSplitDictStore< Key, Dictionary, BvStore, BV >
x_Set() : CMaskedRangeSet, CDonorAcceptorMatrix, CSeq_annot_Handle, CScopeTransaction, CwxClipboardHelper< wxBitmap >, CwxClipboardHelper< wxString >, CwxClipboardHelper< T >, CCompoundRWRegistry, CTwoLayerRegistry, CMemoryRegistry, IRWRegistry, CEnvironmentRegistry
x_SetActiveClient() : CWindowManager
x_SetAlgoOpts() : CRemoteBlast
x_SetAnnot() : CBioseq_Base_Info
x_SetAnnotObjs() : CTSE_Info
x_SetArgs() : CUrl
x_SetBaseName() : CMasterContext
x_SetBiomol() : CLocusItem, CAutoDefFeatureClause
x_SetBioseq_setId() : CTSE_Info
x_SetBioseqChunkId() : CTSE_Split_Info, CSeq_entry_Info
x_SetBioseqId() : CTSE_Info
x_SetBioseqIds() : CTSE_Info
x_SetBioSrc() : CDeflineGenerator
x_SetBit() : CSeqDBBitVector
x_SetBlobRequest() : CId1Reader
x_SetBounds() : CSeqDBMapStrategy
x_SetBrowserRegion() : CReaderBase
x_SetByteSwapped() : CBDB_File, CBDB_RawFile
x_SetChanged() : CSeqMap
x_SetChangedSeqMap() : CBioseq_Info
x_SetChars() : CAlnVecPrinter
x_SetChoice() : CSeqdesc_CI
x_SetChoices() : CSeqdesc_CI
x_SetChunk() : CSeqMap
x_SetClearStatusNoLock() : CJobStatusTracker
x_SetClient() : CDockPanel
x_SetClientIpProperty() : CCgiRequest
x_SetComment() : CCommentItem, CCompoundRWRegistry, CTwoLayerRegistry, CMemoryRegistry, IRWRegistry, CEnvironmentRegistry
x_SetCommentWithURLlinks() : CCommentItem
x_SetConnAttributesBefore() : CODBC_Connection
x_SetContainedId() : CTSE_Split_Info
x_SetContext() : CFlatItem
x_SetContextData() : CId2ReaderBase
x_SetCurrentEntry() : CSeq_entry_I, CSeq_entry_CI
x_SetCurrentFormat() : CFileLoadOptionPanel
x_SetCurrentPanel() : CRunToolDlg, COpenViewDlg, COpenDlg
x_SetCurrHandler() : CGlWidgetPane
x_SetCursor() : CTextSelHandler, CLinearSelHandler
x_SetDatabase() : CRemoteBlast
x_SetDataBases() : CNetBLASTUIDataSource
x_SetDataHandle() : CProjectView
x_SetDate() : CLocusItem, CStartItem
x_SetDBLoadJobId() : CNetBLASTUIDataSource
x_SetDeflinesFromBinary() : CWriteDB_Impl
x_SetDescr() : CBioseq_set_Info, CBioseq_Info, CBioseq_Base_Info
x_SetDetails() : CId2ReaderBase
x_SetDimensions() : CMedia
x_SetDirtyAnnotIndex() : CTSE_Info_Object, CDataSource
x_SetDirtyAnnotIndexNoParent() : CTSE_Info_Object, CTSE_Info
x_SetDivision() : CLocusItem
x_SetEntries() : CSelListModelImpl< Item >, CAlnMultiModel
x_SetEntry() : CSeqdesc_CI, CSeq_annot_CI
x_SetExclude_blobs() : CId2ReaderBase
x_SetFeatureDisplayData() : CMicroArrayReader
x_SetFeatureInfo() : CDisplaySeqalign
x_SetFeatureLocation() : CMicroArrayReader
x_SetFieldDelimiter() : CBlastTabularInfo
x_SetFieldsToShow() : CBlastTabularInfo
x_SetFileType() : CSeqDBExtFile
x_SetFinishStatus() : CLayoutTrack
x_SetFlag() : CNCMessageHandler
x_SetFlags() : CAlignRangeCollection< TAlnRange >, CDeflineGenerator
x_SetFont() : CFontDemoUI
x_SetFormat() : SDiagMessage
x_SetFragment() : CUrl
x_Setg() : CCgiIbuffer
x_SetGi() : CSeq_annot_SNP_Info
x_SetGraphs() : CHitMatrixRenderer
x_SetHandler() : CFileDiagHandler
x_SetHaveSequence() : CWriteDB_Impl
x_SetHost() : CUrl
x_SetHoverPos() : CTextSelHandler
x_SetHttpMethod() : CEUtilsApp
x_SetId() : CBioseqContext
x_SetIdleState() : CThreadPool_ThreadImpl
x_SetIdObjects() : CTSE_Info
x_SetIndexString() : CCgiArgs_Parser
x_SetItemData() : CThemeConfigPanelBase
x_SetItems() : CSelectionControl
x_SetJobKey() : CGridJobStatus
x_SetLastTruncated() : CSeq_loc_Mapper_Base
x_SetLayoutLevel() : CFeaturePanel
x_SetLength() : CLocusItem
x_SetLinkAndMbit() : CBuildDatabase
x_SetLoadedState() : CThemeDlg
x_SetLoadLock() : CDataSource
x_SetLocation() : CBioseqContext
x_SetLock() : CScopeInfo_Base, CDataSource
x_SetMapper() : CBioseqContext
x_SetMaskingLocationsForQueries() : CRemoteBlast
x_SetMatch() : CDataSource_ScopeInfo
x_SetMate() : oligofar::CSRead
x_SetMinusStrand() : IBlastSeqVector, CBlastSeqVectorOM, CBlastSeqVectorFromCSeq_data
x_SetModifiedFlag() : CCompoundRWRegistry, CTwoLayerRegistry, CCompoundRegistry, CMemoryRegistry, IRegistry, CEnvironmentRegistry
x_SetMolInfoTechForConflictCDS() : CCleanup_imp
x_SetMsg() : CAlignmentTrack
x_SetMultiMode() : CMultiFileInput
x_SetName() : CLocusItem, CNamedPipe
x_SetNamedScore() : CSeq_align
x_SetNeedUpdate() : CTSE_Info_Object
x_SetNeedUpdateContents() : CSeq_entry_Info
x_SetNeedUpdateParent() : CTSE_Info_Object, CBioseq_Base_Info
x_SetNoComma() : CAsnRetrieveJob
x_SetNon_locking() : CPrefetchTokenOld_Impl
x_SetNoParent() : CFeatTree
x_SetNotCachedPartId() : CNCBlobStorage
x_SetNumParts() : CMasterContext
x_SetObjAnnot() : CBioseq_set_Info, CBioseq_Info, CBioseq_Base_Info
x_SetObject() : CFlatItem, CSeqMap, CSeq_entry_Info, CSeq_annot_Info, CBioseq_set_Info, CBioseq_Info, CAnnotObject_Info
x_SetObjectPos() : CLayeredLayout, CColumnLayout
x_SetOneParam() : CBlastOptionsRemote, CRemoteBlast
x_SetOwner() : CThreadPool_Task
x_SetPageHitId() : CCgiRequest
x_SetParam() : CBlastOptionsRemote
x_SetParams() : CId1Reader
x_SetParent() : CFeatTree
x_SetParentDirtyAnnotIndex() : CTSE_Info_Object
x_SetPassword() : CUrl
x_SetPath() : CUrl
x_SetPathHooks() : CObjectOStream, CObjectIStream, CObjectStack
x_SetPattern() : CSplign
x_SetPlusStrand() : IBlastSeqVector, CBlastSeqVectorOM, CBlastSeqVectorFromCSeq_data
x_SetPort() : CUrl
x_SetPortLimits() : CGlWidgetDemo, CSeqTextWidget, CSeqGraphicWidget, CPhyloTreeWidget, CHitMatrixWidget, CGlWidgetBase, CAlnMultiWidget, CCrossAlnWidget
x_SetPos() : CSeqVector_CI
x_SetPrefix() : CDeflineGenerator
x_SetProducts() : CGFFReader
x_SetProjectFilename() : CWorkspacePrx
x_SetProp() : CRequestContext
x_SetQuoteFlags() : CBDB_FileDumper
x_SetRawSegType() : CAlnMap
x_SetRawSegTypes() : CAlnMap
x_SetRegion() : CSeqDBMemLease
x_SetRegistry() : CGuiRegistry, CODBCContext, CDBLibContext, CTLibContext
x_SetResolve() : CId2ReaderBase
x_SetRootWindow() : CDockContainer
x_SetRulerText() : CSeqTextPane, CHitMatrixRenderer
x_SetScheme() : CUrl
x_SetScoreMatrix() : CMultiAligner
x_SetScoringMethod() : CAlnMultiWidget
x_SetScrollPosition() : CSeqTextWidget
x_SetSearchPath() : CMetaRegistry
x_SetSegment() : CSeqMap
x_SetSegmentData() : CSeqMap
x_SetSegmentGap() : CSeqMap
x_SetSegmentRef() : CSeqMap
x_SetSelectedIds() : CwxChooseSeqDlg
x_SetSelectedTasks() : CTaskTablePanel
x_SetSelections() : CFeatureCheckPanel, CProjectTreePanel
x_SetSeq_data() : CSeqMap
x_SetSeqFeatProduct() : CPromote
x_SetSeqFrame() : CAlnMixMerger
x_SetSession() : CCgiResponse, CCgiRequest
x_SetSetsCurrentStyleKey() : CThemeSet
x_SetShowDisplayLevel() : CFeaturePanel
x_SetSingleMode() : CMultiFileInput
x_SetSkip() : CFlatItem, CCommentItem
x_SetSNP_annot_Info() : CSeq_annot_Info
x_SetSource() : CSourceItem
x_SetStartStatus() : CLayoutTrack
x_SetState() : CNCMessageHandler, CwxTreeCtrlEx, CMenuItem
x_SetStates() : CThemeDlg
x_SetStatus() : CBlockingQueue< TRequest >::CQueueItem, CQueueItemBase, CThreadPool_Task, CLayoutTrack
x_SetStatusText() : CAppJob, CNetBlastMonitoringJob, CNetBlastSubmittingJob
x_SetStrand() : CBlastSeqVectorOM, CLocusItem
x_SetStream() : CRPCClient< TRequest, TReply >
x_SetSubjectRangesForPartialFetching() : CBlastTracebackSearch
x_SetSubSeqMap() : CSeqMap
x_SetSuffix() : CDeflineGenerator
x_SetTaskCompleted() : CTaskProgressReporter
x_SetTaskName() : CTaskProgressReporter
x_SetTaskTotal() : CTaskProgressReporter
x_SetText() : CMessageSlot
x_SetTime() : CTime
x_SetTimeMTSafe() : CTime
x_SetTimestamp() : CSQLITE3_Cache
x_Settle() : CSeqdesc_CI, CSeq_annot_ftable_I, CSeq_annot_ftable_CI, CSeq_descr_CI, CSeq_annot_CI, CBioseq_CI
x_SettleNext() : CSeqMap_CI
x_SettlePrev() : CSeqMap_CI
x_SetTopology() : CLocusItem
x_SetTotalLoc() : CWig2tableApplication
x_SetTrackData() : CWiggleReader, CReaderBase, CMicroArrayReader
x_SetTrackDataToSeqEntry() : CGff3Reader
x_SetTransaction() : CBDB_RawFile
x_SetTSE_Lock() : CTSE_ScopeInfo
x_Setup() : CSeqDBOIDList, CPhyloTreeFilterDlg
x_SetupArgDescriptions() : CGBenchFeedbackAgentApp, CGBenchApplication, CNCBIwxApplication
x_SetupArgs() : CCgiSampleApplication, CGridCgiSampleApplication, CCgiSampleApplication, CCgiTunnel2Grid, CCgi2RCgiApp
x_SetupAxes() : CPhyloTreePane, CHitMatrixRenderer
x_SetupBlastOptions() : CSplignApp
x_SetupBoostReporters() : CNcbiTestApplication
x_SetupColumns() : CSequenceSearchJob, COrfSearchJob, CFeatureSearchJob, CCpgSearchJob, CComponentSearchJob, CSearchJobBase
x_SetupContext() : CAlnMultiHeaderHandler
x_SetupErrorReporter() : CODBC_Connection
x_SetupGapAlign() : CTracebackTestFixture
x_SetupGLContext() : CGLCanvas
x_SetupGraphTypes() : CHitMatrixRenderer
x_SetupHSPList() : CPhiblastTestFixture
x_SetupMain() : CTracebackTestFixture
x_SetupModelLimits() : CCrossAlnRenderer, CSeqGraphicRenderer
x_SetupPatternInfo() : CPhiblastTestFixture
x_SetupResults() : CPhiblastTestFixture
x_SetupScene() : CGl3dWindow
x_SetupSeqFeat() : CFeature_table_reader_imp
x_SetupSequenceBlk() : CPhiblastTestFixture
x_SetupStatusBar() : CGBenchGUI, CwxMainFrame
x_SetupStdio() : CNcbiApplication
x_SetupTabs() : CSnpFilterUI
x_SetupViewPorts() : CCrossAlnRenderer, CSeqGraphicRenderer
x_SetUser() : CUrl
x_SetValue() : CTlsBase
x_SetValues() : oligofar::CHit
x_SetVector() : CSeqVector_CI
x_SetVisibleRange() : CSnpTableView, CFeatTableView
x_ShiftToFitLimits() : CGlPane
x_ShouldRetry() : CRPCClient< TRequest, TReply >
x_ShowConfigFile() : CCgiSessionSampleApplication
x_ShowContextMenu() : CDockPanel
x_ShowDecoratedPopupMenu() : CGlWidgetBase
x_ShowIcon() : CLayoutTrack
x_ShowPopup() : CMessageSlot
x_ShowSingletonView() : CGBenchGUI, CFrameworkDemoGUI
x_ShowTitle() : CLayoutTrack
x_ShowToolBar() : CWindowManagerService
x_ShowTrack() : CTrackContainer
x_ShowTypewordFirst() : CAutoDefFeatureClause
x_ShrinkCell() : CSplitter
x_Shutdown() : CNetCacheWriter
x_ShutDownServices() : CWorkbench
x_ShutDownToolBars() : CWindowManagerService
x_SimpleLayout() : CAlignedFeatureGraph
x_SimpleMatch() : CSelectionEvent
x_SimpleSort() : CPointerPot
x_SimplifyTSeqLocVector() : CBl2Seq
x_Size() : IBlastSeqVector, CBlastSeqVectorOM, CBlastSeqVectorFromCSeq_data
x_SizesToSplitPositions() : CSplitter
x_SkeletalTestResult() : CSeqTest
x_Skip() : CTar
x_SkipClass() : CBioseq_CI
x_SkipFeature() : CFlatGatherer
x_SkipTag() : CPhrapReader
x_SkipType() : CAlnMap
x_SkipWS() : CWig2tableApplication
x_SlideToHit() : CCpGIslands
x_SmearBtnClicked() : CAnnotConfigDlg
x_SoftUpdate() : CPhyloTreeWidget
x_Sort() : CAnnot_Collector
x_SortAndUnique() : CSeqDBIdSet
x_SortChunkPtrs() : CNCMMReserve
x_SortDescriptions() : CAutoDefSourceGroup
x_SortModifierListByRank() : CAutoDef
x_SortRows() : CAlnMultiModel
x_SortSegs() : CSeq_align_Mapper_Base
x_SparseStringToOids() : CSeqDBIsam
x_Split() : CSplitter
x_SplitAligns() : CSplitDataLoader
x_SplitAnnot() : CSplitDataLoader
x_SplitAttach() : CTSE_Chunk_Info
x_SplitDescr() : CSplitDataLoader
x_SplitFeats() : CSplitDataLoader
x_SplitGraphs() : CSplitDataLoader
x_SplitKeyValuePair() : CGFFReader
x_SplitPositionsToSizes() : CSplitter
x_SplitQualifyingHits() : CSplign
x_SplitSeq() : CSplitDataLoader
x_SplitSeqAlign() : CBlastFormat
x_SplitSeqData() : CSplitDataLoader
x_SplitSet() : CSplitDataLoader
x_StartCommand() : CNCMessageHandler
x_StartDecompressor() : CNlmZipReader
x_StartDrag() : CSplitter
x_StartEditing() : CSeqMap
x_StartFilterJob() : CSnpTableModel
x_StartJob() : CFeatureGraph, CAppJobDispatcher
x_StartLoadJob() : CSnpTableModel
x_StartMonitor() : CGBenchApplication
x_StartMoving() : CLayoutTrackHandler
x_StartOfWhat() : CDB_Exception
x_StartPlain() : CNlmZipReader
x_StartRead() : CBDB_File
x_StartReadingBlob() : CNCMessageHandler
x_StartRequest() : CDiagContext
x_StartRetrivingTask() : CNetBlastMonitoringJob
x_StartTask() : CNetBLASTUIDataSource
x_StartWriteGBSet() : CGBSeqFormatter
x_StartWritingBlob() : CNCMessageHandler
x_State() : CFastaAlignmentBuilder
x_StatisticsNew() : CNetScheduleHandler
x_StatusText() : CAppTaskServiceSlot
x_Step() : CSeq_annot_ftable_I, CSeq_annot_ftable_CI, CSeq_descr_CI
x_StopMonitor() : CGBenchApplication
x_StopMoving() : CLayoutTrackHandler
x_Store() : CBDB_Cache
x_StoreMerger() : CMergeVolumes
x_StorePattern() : CSeqSearch
x_StringIsJustQuotes() : CFeature_table_reader_imp
x_StringSearch() : CSeqDBIsam
x_StringToUTF8() : CWString
x_StripProtXrefs() : CCleanup_imp
x_StrOStreamToTextOStream() : CGBSeqFormatter
x_StrToPtr() : CDebugDumpViewer
x_SubmitSearch() : CRemoteBlast
x_Subtract() : CRangeCollection< Position >
x_SubtractFromFocus() : CFlatGatherer
x_SubtypeCleanup() : CCleanup_imp
x_SummarizeBooleanOp() : CSeqDBIdSet
x_SwapBits() : oligofar::CBitHacks
x_SwapCache() : CSeqVector_CI
x_SwitchCurrentDBPart() : CNCBlobStorage
x_SwitchToActiveState() : CMouseZoomHandler
x_SwitchToIdleState() : CAlnMultiHeaderHandler
x_SwitchToMoveMode() : CAlnMultiHeaderHandler
x_SwitchToReadyState() : CMouseZoomHandler, CMinimapHandler
x_SwitchToResizeMode() : CAlnMultiHeaderHandler
x_SwithToActiveState() : CMinimapHandler
x_SyncRegistryAndEnvironment() : CGBenchApplication
x_SyncSettings() : CFeaturePanel
x_SyncTableSettings() : CDataMiningPanel
x_SyncWithDir() : CLDS_File
x_TagCleanup() : CCleanup_imp
x_TaskFinished() : CThreadPool_ThreadImpl
x_TerminateEventMode() : CStatusBarService
x_TerminateHintMode() : CStatusBarService
x_TermValue() : CAlignFilter
x_TestAlignments() : CHitMatrixDSBuilder, CAlnMultiDSBuilder
x_TestAllCdregions() : CSeqTest
x_TestAndSelectAlign() : CHitMatrixDataSource
x_TestAndSelectAligns() : CHitMatrixDataSource
x_TestCContextTranslator() : CSplitQueryTestFixture
x_TestFormat() : CFormatGuess
x_TestForNode() : IPhyloTreeRenderer
x_TestGuiRegistry() : CGBenchApplication
x_TestHits() : CPhyloTreeCGIApplication
x_TestInput() : CFormatGuess
x_TestLocalStrand() : CSequenceDataTester
x_TestLowerCaseMaskWith() : CBlastFilterTest
x_TestNumericSample() : CSeqDBIsam
x_TestRangeList() : CVecscreenTest
x_TestSeqalign() : CVecscreenTest
x_TestSingleNucleotide_Local() : CSequenceDataTester
x_TestSingleNucleotide_Remote() : CSequenceDataTester
x_TestSingleProtein_Local() : CSequenceDataTester
x_TestSingleProtein_Remote() : CSequenceDataTester
x_TestSingleSequence_Local() : CSequenceDataTester
x_TestSingleSequence_Remote() : CSequenceDataTester
x_TestSingleTranslatedNucl_Local() : CSequenceDataTester
x_TextAlongAxis() : CRuler
x_TextPosChanged() : CTextItemPanel
x_Throw() : CSQLITE3_Statement
x_ThrowException() : CDll
x_ThrowExceptionOnLogicError() : CPsiBlastIterationState
x_ThrowNotValid() : CSeq_loc_CI
x_ThrowOutOfRange() : CSeqVector_CI
x_ThrowSanityCheck() : CException
x_ThrowUnsetValue() : CTableFieldHandle_Base, CSeqTableColumnInfo
x_Throwx() : CBlastOptionsRemote, CBlastOptions
x_TimeLineSlot() : CTimeLine< BV >
x_Title() : CGenbankFormatter
x_TitleFromBioSrc() : CDeflineGenerator
x_TitleFromNC() : CDeflineGenerator
x_TitleFromNM() : CDeflineGenerator
x_TitleFromNR() : CDeflineGenerator
x_TitleFromPatent() : CDeflineGenerator
x_TitleFromPDB() : CDeflineGenerator
x_TitleFromProtein() : CDeflineGenerator
x_TitleFromSegSeq() : CDeflineGenerator
x_TitleFromWGS() : CDeflineGenerator
x_ToArchiveName() : CTar
x_ToCString() : CString2Args
x_ToDisplay() : CRuler
x_ToFilesystemPath() : CTar
x_Tokenize() : CSeqDBAliasNode
x_TokenizeCmdLine() : CString2Args
x_TokenizeFilteringArgs() : CFilteringArgs
x_ToLower() : CWriteDB_IsamIndex
x_ToModel() : CRuler
x_TopBlank() : CSeqTextPane
x_TopNext() : CSeqMap_CI
x_TopPrev() : CSeqMap_CI
x_ToSphere() : CGlArcBall
x_ToUserObject() : CDockContainer, CBLASTParams
x_Traceback() : CTracebackSearchTestFixture
x_TransferFlags() : CMergeAlignmentsParamsPanel
x_TransferResults() : CScoreCache, CSearchJobBase
x_Transform() : CSeqFormatter
x_Translate() : CSFTranslationJob, CAnalysisFileLoader
x_TranslateFacility() : CSysLog
x_TranslateFlags() : CSysLog
x_TranslateFromUserList() : CSeqDBGiListSet
x_TranslateGisFromUserList() : CSeqDBGiListSet
x_TranslateOffsets() : CSubjectRangesSet
x_TranslateTisFromUserList() : CSeqDBGiListSet
x_Trim() : CGBUserTypeParent_CI
x_TrimMatrix() : CGuideTreeCalc
x_tRNAClauseFromNote() : CAutoDef
x_Truncate() : CGlBitmapFont
x_TruncateDB() : CDBAPI_Cache, CBDB_Cache
x_TruncateOverlaps() : CMergedPairwiseAln
x_TryGetDouble() : CWig2tableApplication
x_TryGetDoubleSimple() : CWig2tableApplication
x_TryGetPos() : CWig2tableApplication
x_TryInit() : CNcbiApplication
x_TryMain() : CNcbiApplication
x_TryPlaceCDSFeature() : CAlignedFeatureGraph
x_TSEAttach() : CTSE_Split_Info, CTSE_Info_Object, CTSE_Chunk_Info
x_TSEAttachContents() : CTSE_Info_Object, CSeq_entry_Info, CSeq_annot_Info, CBioseq_set_Info, CBioseq_Info, CBioseq_Base_Info
x_TSEDetach() : CTSE_Split_Info, CTSE_Info_Object
x_TSEDetachContents() : CTSE_Info_Object, CSeq_entry_Info, CSeq_annot_Info, CBioseq_set_Info, CBioseq_Info, CBioseq_Base_Info
x_Tuneup() : CFastLocalTime
x_Type() : ASNParser, DTDParser
x_Uncache() : CSettingsSet
x_UncacheAll() : CSettingsSet
x_UnderlineInterval() : CSeqTextPane
x_UngetLine() : CWig2tableApplication
x_UngetTag() : CPhrapReader
x_UnhideFullContainer() : CDockContainer
x_Unindex() : CSeq_id_PDB_Tree, CSeq_id_Patent_Tree, CSeq_id_Giim_Tree, CSeq_id_General_Tree, CSeq_id_Local_Tree, CSeq_id_Textseq_Tree, CSeq_id_Gi_Tree, CSeq_id_int_Tree, CSeq_id_not_set_Tree, CSeq_id_Which_Tree
x_UnindexAnnotTSE() : CTSE_Info, CDataSource
x_UnindexAnnotTSEs() : CDataSource
x_UnindexBioseq() : CTSE_ScopeInfo
x_UnindexSeqTSE() : CTSE_Info, CDataSource
x_UnindexTSE() : CDataSource_ScopeInfo, CDataSource
x_Unlink() : CNCMMReserve
x_UnloadData() : CProjectPrx
x_UnLoadProjects() : CProjectTask
x_Unlock() : CSyncQueue< Type, Container >, CTSE_Lock
x_UnlockInstanceGuard() : CNCBlobStorage
x_Unmap() : CDataSource
x_UnmapAnnotObject() : CTSE_Info, CSeq_annot_Info
x_UnmapAnnotObjects() : CTSE_Info, CSeq_annot_SNP_Info, CSeq_annot_Info
x_UnmapFeatByGene() : CSeq_annot_Info
x_UnmapFeatById() : CTSE_Info, CSeq_annot_Info
x_UnmapFeatByLocus() : CTSE_Info
x_UnmapFeatIds() : CSeq_annot_Info
x_UnmapMemFiles() : CGeneInfoFileReader
x_UnmapSNP_Table() : CTSE_Info
x_UnpackData() : CImageIOGif
x_UnregisterBioObject() : CTSE_Info
x_UnRegisterClient() : CWindowManager
x_UnregisterHandler() : CGlWidgetPane
x_UnRegisterTools() : CDataMiningService
x_UnsetChars() : CAlnVecPrinter
x_UnsetFlag() : CNCMessageHandler
x_UnsetProp() : CRequestContext
x_Update() : CPageHandler, CAppTaskServiceSlot, CChecksum, CTSE_Info_Object, CClockPanelWMClient, CSnpTableData, CSeqTextWidget, CSeqGraphicWidget, CPhyloTreeWidget, CHitMatrixWidget, CGlWidgetBase, CCrossAlnWidget, CSnpTableView, CSnpTableModel, CFeatTableView, CAlignSpanView
x_UpdateAccessTime() : CDBAPI_Cache, CBDB_Cache
x_UpdateActiveClient() : CWindowManager
x_UpdateAddBtn() : CObjectListWidgetSel
x_UpdateAnnotIndex() : CTSE_Split_Info, CTSE_Info_Object, CTSE_Chunk_Info
x_UpdateAnnotIndexContents() : CTSE_Info_Object, CTSE_Info, CTSE_Chunk_Info, CSeq_annot_SNP_Info, CSeq_entry_Info, CSeq_annot_Info, CBioseq_set_Info, CBioseq_Base_Info
x_UpdateBlob() : CDBAPI_Cache
x_UpdateBoundingBox() : CDummyTrack, CDummyGlyph, CVisRangeGlyph, CTranslationGlyph, CSwitchPointGlyph, CSequenceTrack, CSegmentGlyph, CSeqGlyph, CMatePairGlyph, CLayoutTrack, CLayoutGroup, CHistogramGlyph, CGlyphContainer, CRnaCdsGroup, CFeatGlyph, CCommentGlyph, CClonePlacementGlyph, CCdsGlyph, CAlignSmearGlyph, CAlignGlyph, CLDBlockGlyph, CGwasGlyph, CBinsGlyph
x_UpdateBrowser() : CSnpFilterListDialog
x_UpdateBuffer() : CScoringJob
x_UpdateButtons() : CWindowsDlg, CRunToolDlg, COpenViewDlg, COpenDlg
x_UpdateCacheDown() : CSeqVector_CI
x_UpdateCacheUp() : CSeqVector_CI
x_UpdateChoices() : CTrackCreatorUI
x_UpdateCollapsedState() : CBLAST_DB_Dialog
x_UpdateCombo() : CAdvancedFileInput
x_UpdateComplete() : CTSE_Info_Object
x_UpdateConfig() : CwxSettingsDlg
x_UpdateContentLabel() : CProjectViewBase
x_UpdateCore() : CTSE_Split_Info, CTSE_Info_Object
x_UpdateData() : CAnnotCompareFilterDlg, CTrackContainer, CSixFramesTransTrack, CSegmentMapTrack, CGraphTrack, CGeneModelTrack, CFeatureTrack, CEpigenomicsTrack, CDataTrack, CAlignmentTrack, CSnpTrack, CLDBlockTrack, CHapmapTrack, CGapTrack, CBinsTrack
x_UpdateDataSourceTree() : CAppExplorerService
x_UpdateDB_GetJobNoLock() : CQueue
x_UpdateDB_PutResultNoLock() : CQueue
x_UpdateDelta() : CAlignMarkHandler
x_UpdateDescription() : CScoreMethodsDlg, CScoringMethodsDlg
x_UpdateElement() : CCache< TKey, TValue, THandler, TLock, TSize >
x_UpdateFileList() : CSequenceSearchForm
x_UpdateFilterStatusText() : CBLAST_DB_Dialog
x_UpdateGiInSeqalign() : CSeqAlignFilter
x_UpdateGraphColor() : CHitMatrixRenderer
x_UpdateHandleSeq_id() : CScope_Impl
x_UpdateId() : CSeq_loc
x_UpdateIds() : CGffLoadTask
x_UpdateItems() : CSelectionControl, CMapControl, CAppExplorerService
x_UpdateItemsRange() : CSelectionControl, CMapControl
x_UpdateItemToIndex() : CSelectionControl
x_UpdateKozak() : COrfSearchForm
x_UpdateLayout() : CDockMarkerWindow, CDataTrack, CSnpTrack, CLDBlockTrack, CHapmapTrack, CGapTrack, CBinsTrack
x_UpdateListBox() : CSnpFilterListDialog
x_UpdateListener() : CWindowManager
x_UpdateLoadedSet() : CId2ReaderBase
x_UpdateLocation() : CDataMiningView
x_UpdateMappingByPane() : CRuler
x_UpdateMapWidget() : CItemSelectionPanel
x_UpdateMarks() : CAlignMarkHandler
x_UpdateMessageField() : CStatusBarService
x_UpdateMinScale() : CAlnMultiModel
x_UpdateMsg() : CTrackContainer
x_UpdateName() : CSeq_annot_Info
x_UpdateNBRect() : CBaseTextOStream
x_UpdateNcbipnaScore() : oligofar::CQueryHash
x_UpdateNcbiqnaScore() : oligofar::CQueryHash
x_UpdateObjectKeys() : CSeq_annot_Info
x_UpdateObserversNow() : CObservable
x_UpdateOnCoordsChanged() : CAlnMultiModel
x_UpdateOnDataChanged() : CAlnMultiWidget, CAlnMultiModel
x_UpdateOnRowHChanged() : CAlnMultiWidget
x_UpdateOnStylesChanged() : CAlnMultiWidget
x_UpdateOnSwitchMaster() : CAlnMultiWidget
x_UpdateOnVisibilityChanged() : CAlnMultiModel
x_UpdateOnZoom() : CCrossAlnPane, CGlWidgetBase, CAlnMultiWidget
x_UpdateOptions() : CPrintOptionsDlg, CSaveImageDlg, CPrintDlg
x_UpdateOwnerStatOnDelete() : CBDB_Cache
x_UpdatePageTreeRoot() : CPageHandler
x_UpdatePane() : CSeqTextWidget, CSeqGraphicWidget, CPhyloTreeWidget, CHitMatrixWidget, CCrossAlnWidget
x_UpdatePanelFont() : CTextPanel
x_UpdatePos() : CBaseTextOStream
x_UpdatePosLabelsStep() : CRuler
x_UpdatePreferredHeights() : CMapItem
x_UpdateProgress() : CTrackCreatorUI
x_UpdateProject() : CAppExplorerService
x_UpdateProject_Views() : CAppExplorerService
x_UpdateProjectFolder() : CAppExplorerService
x_UpdateProjectFolder_Folders() : CAppExplorerService
x_UpdateProjectFolder_Items() : CAppExplorerService
x_UpdateProjectItem() : CAppExplorerService
x_UpdateProjectMatrices() : CGlPane
x_UpdateProjectWindowsFolder() : CAppExplorerService
x_UpdateQualifiers() : CFeatureCreateDialog
x_UpdateReadAccessTime() : CBDB_Cache
x_UpdateRegion() : CSplitter
x_UpdateRowHeight() : CAlnVecRow
x_UpdateScoreMap() : CHitMatrixDataSource
x_UpdateScrollbars() : CSeqTextWidget, CGlWidgetBase
x_UpdateSeg() : CSeqVector_CI
x_UpdateSelectedRow() : CwxPhyloEditDlg
x_UpdateSelection() : CAlignMarkHandler
x_UpdateSelectionScope() : CDataMiningView
x_UpdateSeq_feat() : SSNP_Info
x_UpdateSeq_featData() : SSNP_Info
x_UpdateSeq_inst() : CSeqMap
x_UpdateSetBtns() : CEditStylesDlg
x_UpdateState() : CAlignMarkHandler
x_UpdateStatusMessage() : CFeatTableView, CAlignSpanView
x_UpdateStyleColumns() : CAlnMultiWidget
x_UpdateTable() : CWindowsDlg
x_UpdateThemeOptions() : CwxSettingsDlg
x_UpdateThemes() : CwxSettingsDlg
x_UpdateTitle() : COpenDlg
x_UpdateToolbar() : CTextPanel
x_UpdateToolCombo() : CDataMiningView
x_UpdateTotalRange() : CSeq_loc
x_UpdateTypeHash() : CFeatTableDS
x_UpdateUI() : CObjectListWidgetSel, CDiagConsolePanel
x_UpdateViewPanel() : COpenViewDlg
x_UpdateViewType() : CTextPanel
x_UpdateVisRangeLayout() : CViewGraphic
x_UpdateWidget() : CDataMiningPanel
x_UpdateWidgetAndTool() : CDataMiningPanel
x_UpdateWiggleSet() : CWiggleReader
x_UpdateWindowsMenu() : CWindowManager
x_UpdateWindowsTree() : CAppExplorerService
x_UpdateWithoutStudies() : CSnpTableData
x_UpdateWithStudies() : CSnpTableData
x_UpdateWorkspaceFolder() : CAppExplorerService
x_UpdateWorkspaceFolder_Folders() : CAppExplorerService
x_UpdateWorkspaceFolder_Projects() : CAppExplorerService
x_UpdateWorkspaceTree() : CAppExplorerService
x_Upper() : CSeqDBIsam
x_UseOID() : CSeqDBDemo_ChunkIteration
x_UserFieldToColor() : CSGConfigUtils
x_UserUnlockTSE() : CTSE_ScopeInfo_Base
x_UsingAutoSort() : CAlnMultiModel
x_UTF8ToString() : CWString
x_Valid() : CSeqdesc_CI
x_Validate() : CPsiBlastImpl, CStaticArraySearchBase< KeyValueGetter, KeyCompare >, CwxChooseSeqDlg, CStringUTF8
x_ValidateAbuttingRNA() : CValidError_bioseq
x_ValidateAbuttingUTR() : CValidError_bioseq
x_ValidateAlignPercentIdentity() : CValidError_align
x_ValidateBarcode() : CValidError_bioseq
x_ValidateCall() : CWorkspaceConstPrx, CProjectConstPrx
x_ValidateCdregionCodebreak() : CValidError_feat
x_ValidateCDSmRNAmatch() : CValidError_bioseq
x_ValidateChunkBounds() : CSplitQueryTestFixture
x_ValidateCodeBreakNotOnCodon() : CValidError_feat
x_ValidateCompletness() : CValidError_bioseq
x_ValidateContextOffsetsPerChunkAssignment() : CSplitQueryTestFixture
x_ValidateDendiag() : CValidError_align
x_ValidateDenseg() : CValidError_align
x_ValidateDim() : CValidError_align
x_ValidateFastaLike() : CValidError_align
x_ValidateFile() : CAgpValidateApplication
x_ValidateFilteringAlgorithm() : CMaskingFmtSpecHelper
x_ValidateFlags() : CAlignRangeCollection< TAlnRange >
x_ValidateIndex() : ILocalQueryData
x_ValidateInput() : CGenBankLoadOptionPanel, CNetBLASTLoadOptionPanel, CSaveDlg
x_ValidateLocalQueryData() : CSplitQueryTestFixture
x_ValidateLock() : CNCBlobLockHolder
x_ValidateLocusTagGeneralMatch() : CValidError_bioseq
x_ValidateMoleculeType() : CBlastInputReader
x_ValidateMultiplePubs() : CValidError_bioseq
x_ValidateOptions() : CBLASTToolManagerBase, CBLASTSeqToolManager, CBLASTSearchToolManager
x_ValidatePackage() : CPkgManager
x_ValidatePacked() : CValidError_align
x_ValidatePages() : CValidError_imp
x_ValidateParams() : CSequenceSearchJob, COrfSearchJob, CFeatureSearchJob, CEntrezSearchJob, CCpgSearchJob, CComponentSearchJob, CCreateNeedlemanWunschToolManager, CAutodefToolManager, CWindowMaskerTool, CCleanupTool, CTreeBuilderTool, CSplignTool, CNetBLAST_DMSearchJob, CMergeAlignmentsToolManager, CGroupAlignmentsToolManager, CFindOverlapTool, CCreateGeneModelToolManager, CCleanupAlignmentsToolManager, CBLASTToolManagerBase, CFeatureSearchJob, CSearchJobBase, CAlgoToolManagerBase
x_ValidatePssmVsGi129295() : CPsiBl2SeqTestFixture
x_ValidatePssmVsGi40456275() : CPsiBl2SeqTestFixture
x_ValidatePssmVsGi7450545() : CPsiBl2SeqTestFixture
x_ValidatePubFeatures() : CValidError_bioseq
x_ValidateQueries() : CMultiAligner
x_ValidateQueriesPerChunkAssignment() : CSplitQueryTestFixture
x_ValidateQueryContextsPerChunkAssignment() : CSplitQueryTestFixture
x_ValidateQueryInfoForChunk() : CSplitQueryTestFixture
x_ValidateQueryInMsa() : CPsiBlastInputClustalW
x_ValidateQuerySeqLocsPerChunk() : CSplitQueryTestFixture
x_ValidateSegmentGap() : CValidError_align
x_ValidateSeqFeatLoc() : CValidError_feat
x_ValidateSeqId() : CValidError_align
x_ValidateSeqLength() : CValidError_align
x_ValidateSourceFeatures() : CValidError_bioseq
x_ValidateState() : CwxTreeCtrlEx
x_ValidateStd() : CValidError_align
x_ValidateStrand() : CValidError_align
x_ValidateTitle() : CValidError_bioseq
x_ValidateUserHits() : CMultiAligner
x_ValidateUsingFiles() : CAgpValidateApplication
x_ValidDesc() : CSeqdesc_CI
x_ValidNeighboursOnFirstDim() : CMergedPairwiseAln
x_ValidNeighboursOnSecondDim() : CMergedPairwiseAln
x_Value() : ASNParser, DTDParser
x_Verify() : oligofar::CScoring, CMemoryFile, CMemoryFileSegment
x_Verify_AssignType() : CVariant
x_VerifyFaultObj() : CSoapMessage
x_VerifyFrame() : CBlastQueryFilteredFrames
x_VerifyFrameEnded() : CDebugDumpContext
x_VerifyFrameStarted() : CDebugDumpContext
x_VerifyProgressNotNull() : CAppJobDispatcher
x_VerifySettings() : CSeqGraphicConfig
x_ViewsUpdateItemRange() : CSelListModelImpl< Item >
x_ViewsUpdateItems() : CSelListModelImpl< Item >
x_Visible_AddChildToContainer() : CDockContainer
x_Visible_RemoveNode() : CDockContainer
x_Visible_ReplaceChildWithContainer() : CDockContainer
x_Visible_ReplaceContainerWithChild() : CDockContainer
x_Visible_V() : CSeqGlyph
x_WaitForBlobLock() : CNCMessageHandler
x_WaitForDBLoadJob() : CNetBLASTUIDataSource
x_WaitForPoolStop() : CThreadPool_ServiceThread
x_WaitForPredicate() : CThreadPool_Impl, CBlockingQueue< TRequest >
x_Warn() : CGFFReader, CGff3Reader
x_WGSComment() : CFlatGatherer
x_WindowAvgScores() : CScoringJob
x_WorkOnThread() : CSchedulerEngine
x_World2Local() : CSeqGlyph
x_WrapAlignmentInSeqAnnot() : CBlastFormat
x_WrapDescription() : CSaveDlg
x_WrapOutputLine() : CAlignFormatUtil
x_Write() : CSeq_annot_SNP_Info_Reader, CBDB_File, SDiagMessage
x_WriteArchive() : CTar
x_WriteBlobData() : CNCMessageHandler
x_WriteCacheFile() : CMRUCache
x_WriteClassNamespace() : CObjectOStreamXml
x_WriteCloseTag() : CXmlTagWriter, CTextTagWriter, ITagWriter
x_WriteEntryInfo() : CTar
x_WriteErrorToMonitor() : CNetScheduleHandler
x_WriteExtraGis() : CSeqAlignFilter
x_WriteFile() : CProjectFileWriter
x_WriteFileHeader() : CGBSeqFormatter
x_WriteGBSeq() : CGBSeqFormatter
x_WriteGtf() : CProjectFileWriter
x_WriteHeader() : CWriteDB_IsamIndex
x_WriteIndent() : CXmlTagWriter
x_WriteIndexFile() : CElementaryMatching
x_WriteIntFixed() : CBlastDbBlob
x_WriteIntFixed_LE() : CBlastDbBlob
x_WriteObject() : CProjectFileWriter
x_WriteOctetString() : CXmlValueItem
x_WriteOverflow() : CBDB_CacheIWriter
x_WritePacket() : CTransmissionWriter
x_WriteRaw() : CBlastDbBlob
x_WriteSeqIds() : CFastaOstream
x_WriteSeqTitle() : CFastaOstream
x_WriteSequence() : CFastaOstream
x_WriteStream() : CXmlTagWriter, CTextTagWriter, ITagWriter
x_WriteString() : CObjectOStreamJson, CBlastDbBlob, CXmlValueItem
x_WriteTag() : CXmlTagWriter, CTextTagWriter, ITagWriter
x_WriteText() : CXmlTagWriter, CTextTagWriter, ITagWriter
x_WriteToStream() : CStringOrBlobStorageWriter
x_WriteVarInt() : CBlastDbBlob
x_XrefInGeneXref() : CFlatXrefQVal
x_Zoom() : CGl3dWindow, CSplineWindow, CGl3dWindow
x_ZoomAll() : CGlWidgetBase
x_ZoomIn() : CPhyloTreeWidget, CGlWidgetBase
x_ZoomOut() : CPhyloTreeWidget, CGlWidgetBase
x_ZoomToHits() : CHitMatrixWidget
x_ZoomToRange() : CAlnMultiWidget
xCancel() : CODBC_SendDataCmd
xCheck4MoreResults() : CODBC_RPCCmd, CODBC_LangCmd
xCMSPeak() : CMSPeak
xfer_init : DB_BCPINFO, _cs_blkdesc
xflags : gz_header_s
xGetBlobOStream() : CResultSet
xGetData() : CODBC_RowResult
xLangCmd() : CODBC_Connection, CTL_Connection
xmlattr_ : xml::impl::ait_impl
xmlchar_helper() : xml::impl::xmlchar_helper
XMLDataGenerator() : CMsvcTools
XmlEncode() : NStr
XmlMemberSeparator() : CChoiceDataType, CDataContainerType, CDataMemberContainerType
xmlnode_ : xml::impl::node_impl, xml::attributes::pimpl, xml::impl::ait_impl
XmlTagName() : CDataType
Xor() : mu::ParserInt
xorig : BitmapCharRec
xpath_expression() : xml::xpath_expression
xpos : GlZoomSpec::PixelDim
xratio : GlZoomSpec
xRepulsion : CPhyloForce::calc_two_forces
XSDEntityLexer() : XSDEntityLexer
XSDLexer() : XSDLexer
XSDParser() : XSDParser
xsgetn() : CCompressionStreambuf, CIndentingStreambuf, CPushback_Streambuf, CConn_Streambuf, CRWStreambuf
xslt::stylesheet : xml::document
xslt_result_ : xml::impl::doc_impl
xSpring : CPhyloForce::calc_two_forces
xsputn() : CCompressionStreambuf, CPushback_Streambuf, CConn_Streambuf, CRWStreambuf
xsum : LinkHSPStruct, BlastHSPLink
xWrite() : CMSPeak
xx_unused_CCoreException() : CCoreException
xx_unused_CDB_ClientEx() : CDB_ClientEx
xx_unused_CDB_DeadlockEx() : CDB_DeadlockEx
xx_unused_CDB_DSEx() : CDB_DSEx
xx_unused_CDB_MultiEx() : CDB_MultiEx
xx_unused_CDB_RPCEx() : CDB_RPCEx
xx_unused_CDB_SQLEx() : CDB_SQLEx
xx_unused_CDB_TimeoutEx() : CDB_TimeoutEx
xx_unused_CDB_TruncateEx() : CDB_TruncateEx
XY() : IPhyGraphicsNode

Generated on Wed Dec 9 07:48:56 2009 for NCBI C++ ToolKit by

1.4.6

Modified on Wed Dec 09 08:18:44 2009 by modify_doxy.py rev. 173732