Here is a list of all class members with links to the classes they belong to:

- p -

• p : BLAST_LetterProb, tds_align_struct, _Rnd_Smp
• P : CSymDustMasker, CSymDustMasker::triplets
• p2 : _Cxl_Los, _Fld_Mtf
• p_fraction_tolerance : ncbi::boost_fp_impl::close_at_tolerance< FPT >
• p_strong_or_weak : ncbi::boost_fp_impl::close_at_tolerance< FPT >
• Pack() : CSeqConvert_imp, CSeqportUtil_implementation, CSeq_id_General_Str_Info, CSeq_id_General_Id_Info, CSeq_id_Textseq_Info, CSeqConvert, CPackString, CSeqportUtil, CBDB_BufferManager
• PackAsDeltaSeq() : CBioseq
• packet_size : _hcattr
• PackKeys() : SAnnotObjectsIndex
• PackToDouble() : mu::ParserComplex
• PackWord() : oligofar::CBitHacks
• Pad() : CFlatItemFormatter, CEmblFormatter
• pad : SHostInfoTag, SSERV_DnsInfo, SHINFO_Params
• PageChanged() : CPager
• pair : CSRSearch::SResultData
• pair_base_member() : pair_base_member< Base, Member >
• pairBlock : ExtendInfo
• PairwiseAlignmentList : AlignmentManager
• palpha : SSequence
• Parallel() : CVect4< T >, CVect3< T >, CVect2< T >
• paralog : ConnectsParalogs
• param1 : SJS_Request
• param2 : SJS_Request
• param3 : SJS_Request
• param_by_value : _cs_param
• param_count : _hstmt
• param_data_called : _hstmt
• param_info : tds_socket
• param_list : _DBREMOTE_PROC, _cs_dynamic, _csremote_proc
• param_num : _hstmt
• param_type : xslt::stylesheet
• paramC : Blast_KarlinBlk
• Parameters : CCursor
• ParamList : CStatement
• params : SCSVExportDlgModel, SServiceConnectorTag, CHMMParameters::SDetails, BlastHSPCullingData, BlastHSPCollectorData, BlastHSPBestHitData, _hstmt, tds_dynamic, SNSProtoParsedCmd< Extra >, BlastHSPPipeInfo, BlastHSPWriterInfo
• Parent() : CTreeContNodeBase
• parent : xml::node, tree< T, tree_node_allocator >, SSequence, CGFFReader::SRecord, _hdesc, tds_socket, tds_context, tree_node_< T >
• parent_ : xml::impl::epimpl, xml::node_set::const_iterator, xml::node_set::iterator, tree< T, tree_node_allocator >::sibling_iterator
• parent_id : CLDS_FindSeqIdFunc::SCandidate
• parent_object_id : SLDS_ObjectDB, SLDS_AnnotDB
• parent_offset : CLDS_CoreObjectsReader::SObjectDetails
• parent_type : multiset< Key, Compare >, set< Key, Compare >
• parentAlignment : Block
• parentEdge : meNode
• parentIndexes : ShowHideInfo
• Parentize() : CSeq_entry
• ParentizeOneLevel() : CSeq_entry
• parentScan : CMsHdf5::MSMapEntry
• parentSet : StructureBase
• parentTaxid : TaxonomyTreeNode
• Parse() : CSeq_id_General_Str_Info, CSeq_id_General_Id_Info, CDiagSyntaxParser, CDiagLexParser, CGetOpt, pcrecpp::Arg, pcrecpp::_RE_MatchObject< T >, CQueryParseTree, CSplitParser, CSeq_annot_SNP_Info_Reader, COpenGLPrintBuffer, CStringPairs< TContainer >, CExprParser
• parse_char() : pcrecpp::Arg
• parse_chunk() : xml::event_parser
• parse_double() : pcrecpp::Arg
• parse_file() : xml::event_parser
• parse_finish() : xml::event_parser
• parse_float() : pcrecpp::Arg
• parse_http_hdr : SHttpConnector
• parse_int() : pcrecpp::Arg
• parse_int_cradix() : pcrecpp::Arg
• parse_int_hex() : pcrecpp::Arg
• parse_int_octal() : pcrecpp::Arg
• parse_int_radix() : pcrecpp::Arg
• parse_long() : pcrecpp::Arg
• parse_long_cradix() : pcrecpp::Arg
• parse_long_hex() : pcrecpp::Arg
• parse_long_octal() : pcrecpp::Arg
• parse_long_radix() : pcrecpp::Arg
• parse_longlong() : pcrecpp::Arg
• parse_longlong_cradix() : pcrecpp::Arg
• parse_longlong_hex() : pcrecpp::Arg
• parse_longlong_octal() : pcrecpp::Arg
• parse_longlong_radix() : pcrecpp::Arg
• parse_null() : pcrecpp::Arg
• parse_pkl() : CPkl2hdf5Application
• parse_seqids_ : CMaskFastaReader
• parse_short() : pcrecpp::Arg
• parse_short_cradix() : pcrecpp::Arg
• parse_short_hex() : pcrecpp::Arg
• parse_short_octal() : pcrecpp::Arg
• parse_short_radix() : pcrecpp::Arg
• parse_stream() : xml::event_parser
• parse_string() : pcrecpp::Arg
• parse_stringpiece() : pcrecpp::Arg
• parse_uchar() : pcrecpp::Arg
• parse_uint() : pcrecpp::Arg
• parse_uint_cradix() : pcrecpp::Arg
• parse_uint_hex() : pcrecpp::Arg
• parse_uint_octal() : pcrecpp::Arg
• parse_uint_radix() : pcrecpp::Arg
• parse_ulong() : pcrecpp::Arg
• parse_ulong_cradix() : pcrecpp::Arg
• parse_ulong_hex() : pcrecpp::Arg
• parse_ulong_octal() : pcrecpp::Arg
• parse_ulong_radix() : pcrecpp::Arg
• parse_ulonglong() : pcrecpp::Arg
• parse_ulonglong_cradix() : pcrecpp::Arg
• parse_ulonglong_hex() : pcrecpp::Arg
• parse_ulonglong_octal() : pcrecpp::Arg
• parse_ulonglong_radix() : pcrecpp::Arg
• parse_ushort() : pcrecpp::Arg
• parse_ushort_cradix() : pcrecpp::Arg
• parse_ushort_hex() : pcrecpp::Arg
• parse_ushort_octal() : pcrecpp::Arg
• parse_ushort_radix() : pcrecpp::Arg
• ParseAcc() : CSeq_id_Textseq_Info
• ParseAccNumber() : CSeq_id_Textseq_Info
• ParseAddress() : WSDLParser
• ParseAnnot() : CSeq_annot_SNP_Info_Reader
• ParseAnnotation() : XSDParser
• ParseAny() : XSDParser
• ParseAppInfo() : XSDParser
• ParseArg() : oligofar::COligoFarApp, oligofar::CFaDiceApp, oligofar::CApp, oligofar::CAlignTest
• ParseArgs() : oligofar::CApp
• ParseArguments() : CProjBulderApp, CNetServProtoParserBase
• ParseAttribute() : XSDParser
• ParseAttributeContent() : XSDParser
• ParseAttributeGroup() : XSDParser
• ParseAttributeGroupRef() : XSDParser
• ParseAttributesContent() : DTDParser
• ParseBinding() : WSDLParser
• ParseBody() : WSDLParser
• ParseCmdCode() : mu::ParserBase
• ParseCommand() : CNetServProtoParser< Extra >, CNetServProtoParserBase
• ParseComplexType() : XSDParser
• ParseComponentCols() : CAgpRow
• ParseConfig() : oligofar::COligoFarApp, oligofar::CAlignerBase
• ParseConfigFile() : CBDB_ConfigStructureParser
• ParseContainer() : XSDParser
• ParseContent() : XSDParser, WSDLParser
• ParseCurrFunctName() : CDiagCompileInfo
• ParseDataBed() : CWiggleRecord
• ParseDataFixedstep() : CWiggleRecord
• ParseDataLine() : CMaskFromFasta, CFastaReader
• ParseDataVarstep() : CWiggleRecord
• ParseDeclarationFixedstep() : CWiggleRecord
• ParseDeclarationVarstep() : CWiggleRecord
• ParseDefaults() : CSeqTableLocColumns
• ParseDefLine() : CFastaMapper, CFastaReader
• ParseDiagStream() : SDiagMessage
• ParseDocumentation() : XSDParser
• ParseElementContent() : XSDParser, DTDParser
• ParseEntityContent() : DTDParser
• ParseEntries() : CCgiRequest
• ParseEnumeratedList() : DTDParser
• ParseEnumeration() : XSDParser
• ParseError() : AbstractParser
• ParseEscapes() : NStr
• ParseExtension() : XSDParser
• ParseFastaIds() : CSeq_id
• ParseFunction : mu::ParserBase
• ParseGapCols() : CAgpRow
• ParseGroup() : XSDParser
• ParseGroupRef() : XSDParser
• ParseHeader() : XSDParser, WSDLParser
• ParseIDs() : CFastaReader
• ParseImport() : XSDParser
• ParseInclude() : XSDParser
• ParseIndexes() : CCgiRequest
• ParseIni() : CGetOpt
• ParseInput() : WSDLParser
• ParseList() : XSDParser
• ParseMaxOccurs() : XSDParser
• ParseMessage() : WSDLParser, SDiagMessage
• ParseMinOccurs() : XSDParser
• ParseOperation() : WSDLParser
• ParseOutput() : WSDLParser
• ParseParamPairs() : CDBUriConnParams
• ParsePart() : WSDLParser
• ParsePlainTextFile() : CNcbiResourceInfoFile
• ParsePort() : WSDLParser
• ParsePortType() : WSDLParser
• ParseProfileString() : CSGConfigUtils
• Parser : mu::Parser, pcrecpp::Arg
• parser_ : pcrecpp::Arg
• parser_context_ : xml::impl::epimpl
• parser_status_ : xml::impl::epimpl
• ParseRange() : oligofar::COligoFarApp, CFastaReader
• ParserBase() : mu::ParserBase
• ParserByteCode() : mu::ParserByteCode
• ParserCallback() : mu::ParserCallback
• ParserComplex() : mu::ParserComplex
• ParseRecord() : CRmOutReader
• ParseRemainingContent() : CCgiRequest
• ParserError() : mu::ParserError
• ParserErrorMsg() : mu::ParserErrorMsg
• ParseRestriction() : XSDParser
• ParserInt() : mu::ParserInt
• ParserStack() : mu::ParserStack< TValueType >
• ParserTester() : mu::Test::ParserTester
• ParserToken() : mu::ParserToken< TBase, TString >
• ParserTokenReader : mu::ParserTokenReader, mu::ParserBase
• ParseSamLine() : oligofar::CSamSource
• ParseSeq_feat() : SSNP_Info
• ParseSeqId() : oligofar::CSnpDbBase
• ParseServer() : CDBUriConnParams
• ParseService() : WSDLParser
• ParseSettings() : STrackSettings
• ParseSignature() : CObjFingerprint
• ParseSimpleContent() : XSDParser
• ParseSlash() : CDBUriConnParams
• ParseString() : mu::ParserBase
• ParseStrNumber() : CSeq_id_General_Str_Info
• ParseStructuredVoucher() : COrgMod
• ParseStructureLine() : CBDB_ConfigStructureParser
• ParseTitle() : CFastaMapper, CFastaReader
• ParseTrackDefinition() : CWiggleRecord
• ParseTypeDefinition() : XSDParser
• ParseTypes() : WSDLParser
• ParseUnion() : XSDParser
• ParseValue() : mu::ParserBase
• part_id : SNCDBPartInfo, SNCBlobCoords
• part_number : CAgpRow
• partial : match_data, SBlastTargetTranslation
• partially_matched : CCompareSeq_locs::ResultCounts
• PartialMatch() : pcrecpp::RE
• PartialModelStepBack() : CGnomonEngine
• pass : SFTPConnector, SConnNetInfo
• PassAll() : IProjectFilter, CProjectsLstFileFilter
• PassAllTests() : SimpleBoundaryShrinker, SimpleBoundaryExtender
• passedFilters() : CDUpdater
• Passes() : SSnpFilter, CFilterRegEx, CFilterNull< T >, CFilterDefault< T >, CFilterT< T >
• Passivate() : CServer_Listener, IServer_ConnectionBase
• password : impl::SLoginData, tds_connection, tds_login
• Password() : CDB_Connection, I_Connection, impl::CConnection
• Paste() : CPhyloTreeDataSource
• PasteFromClipboard() : CAppExplorerService
• pat_info : BlastHSP
• patch : CGBenchVersionInfo, SHINFO_Params
• Path() : CParse
• path : gz_stream, SFTPConnector, CWindowMaskerPanel::SMaskerInfo, SSERV_HttpInfo, SConnNetInfo
• path_next : CMultiAligner::SGraphNode
• path_score : BlastGapSW
• path_stop_i : BlastGapSW
• path_stop_j : BlastGapSW
• Pattern() : CWinMaskConfig
• pattern : pcrecpp::RE, CWinMaskConfig, CSeqMaskerWindowPattern, CSeqMasker, SPHIPatternSearchBlk, SPHIQueryInfo
• pattern_ : pcrecpp::RE
• pattern_info : BlastQueryInfo
• pattern_position : pcre_callout_block
• PatternDialog() : PatternDialog
• patternProbability : SPHIPatternSearchBlk
• payload : NaLookupBackboneCell, CompressedLookupBackboneCell, AaLookupSmallboneCell, AaLookupBackboneCell
• pb : _pbcb
• pbackfail() : CIndentingStreambuf, CPushback_Streambuf
• pcomment : CAgpRow
• pct_identity : CContigAssembly::SAlignStats
• pdbChain : MoleculeIdentifier
• pdbID : StructureObject, MoleculeIdentifier
• PE : CSRSearch
• Peak : _MassPeak
• PeakLists : CMSPeak
• Peaks2Spectrum() : CSpectrumSet
• PeakSet : CMSPeakSet
• PeekAnyTagFirstByte() : CObjectIStreamAsnBinary
• PeekChar() : CIStreamBuffer, CBufferedLineReader, CMemoryLineReader, CStreamLineReader, ILineReader, CObjectIStreamAsn
• PeekCharNoEOF() : CIStreamBuffer
• PeekClassTag() : CObjectIStreamAsnBinary
• PeekFindChar() : CIStreamBuffer
• PeekIndefiniteLength() : CObjectIStreamAsnBinary
• PeekLRUForDestroy() : CNCMMDBPage
• PeekNextTypeName() : CObjectIStreamXml, CObjectIStream
• PeekTag() : CObjectIStreamAsnBinary
• PeekTagByte() : CObjectIStreamAsnBinary
• pels : MATR< el >
• Penalty() : oligofar::IScore
• penalty : BlastScoreBlk, BlastScoringParameters, BlastScoringOptions
• pending : internal_state, SOCK_tag, LSOCK_tag, TRIGGER_tag
• PENDING_ALIGNMENT : CCdCore
• pending_buf : internal_state
• pending_buf_size : internal_state
• pending_out : internal_state
• pendingCommands : FileMessenger
• PendingCount() : CTarReader, CxBlobReader, CDBAPI_CacheIReader, CBDB_CacheIReader, CNetCacheReader, CCGIStreamReader, CDB_Result_Reader, CTransmissionReader, CNlmZipReader, CBlobReader, CBDB_BLobStream, CBDB_BlobReaderWriter, CStringReader, CStreamReader, IReader, CFileReaderWriter, CFileReader, CStringOrBlobStorageReader, CSocketReaderWriter, CCgiEntryReader
• PendingIntersect() : CJobStatusTracker
• PendingStructureAlignments : UpdateViewer
• pendingStructureAlignments : UpdateViewer
• pendingStructures : UpdateViewer
• PepCharge() : CSearch< LEGACY, NHITS >
• PeptidesExamined : CMSPeak
• Peptol : _MassPeak
• Perc() : CProSplignOutputOptionsExt
• perc_del : CMaskData
• perc_div : CMaskData
• perc_ins : CMaskData
• percent_identity : MatrixData, BlastHitSavingOptions
• percent_tolerance_t() : ncbi::boost_fp_impl::percent_tolerance_t< FPT >
• PercentAtOrOverThresholdColumnScorer() : PercentAtOrOverThresholdColumnScorer
• PercentBelow() : CMSPeak
• percentile : LeaveOneOutParams
• PercentOfWeightOverThresholdColumnScorer() : PercentOfWeightOverThresholdColumnScorer
• perfect() : CSymDustMasker::perfect
• perfect_list_type : CSymDustMasker
• period : CScheduler_QueueEvent, SegParameters
• PeriodicTableClass() : PeriodicTableClass
• perm : DState
• PersistEntry() : CGridCgiContext
• person_id : SPhoneBookZipIDX, SPhoneBookDB
• persons : STableRowHook_Ctx
• pFactory : SFactoryList< Type >
• PFindByName() : PFindByName< T >
• PFindDesc() : CThemeConfigPanelBase::PFindDesc
• PFindModByType() : PFindModByType
• PFindType() : CThemeConfigPanelBase::PFindType
• pgsize : SHINFO_Params
• pguidEvent : tagODBC_VS_ARGS
• phase : SGFFrec
• Phase() : CIntron, CExon
• PhaseName() : CBMARefinerPhase
• phaseOrderCombo : BMARefinerOptionsDialog
• PhaseSkipped() : CBMARefinerBlockEditPhase, CBMARefinerLOOPhase, CBMARefinerPhase
• PhaseType() : CBMARefinerBlockEditPhase, CBMARefinerLOOPhase, CBMARefinerPhase
• phi_offsets : BlastOffsetPair
• phi_pattern : LookupTableOptions
• phone : SPerson, SPhoneBookDB
• pi() : xml::node::pi
• pickBioseq() : CDUpdater
• PictureQueryStrand() : oligofar::CAlignerBase
• PictureSubjectStrand() : oligofar::CAlignerBase
• pident : hitStr
• PigToBioseq() : CSeqDB
• PigToGi() : CSeqDB
• PigToOid() : CSeqDBVol, CSeqDBIsam, CSeqDBImpl, CSeqDB
• pimpl() : xslt::stylesheet::pimpl, xml::attributes::pimpl
• pimpl_ : xml::tree_parser, xslt::stylesheet, xml::node_set, xml::node, xml::node::const_iterator, xml::node::iterator, xml::event_parser, xml::document, xml::attributes, xml::attributes::const_iterator, xml::attributes::iterator
• Ping() : mu::Test::ParserTester
• PinPage() : CNCMMDBCache
• PInterProcessLock() : PInterProcessLock
• pipe : SPipeConnector, SNamedPipeConnector
• pipebufsize : SNamedPipeConnector
• pipename : SNamedPipeConnector
• pixel_dim : GlZoomSpec
• PKeyLess : CSeq_id_General_Id_Info
• pklSpecComp() : CPkl2hdf5Application
• Place() : CGlArcBall
• PlayAroundWithSuggestIntervals() : CMytestApplication
• PLessByKey() : PLessByKey< KeyValueGetter, KeyCompare >
• PLibExclude() : PLibExclude
• PluralizeDescription() : CAutoDefFeatureClause_Base
• PluralizeInterval() : CAutoDefFeatureClause_Base
• plus2() : mu::Test::ParserTester
• plus_func() : plus_func< Type >
• PlusOne : CMSPeak
• PlusStrand() : SSNP_Info
• PM : CSRSearch
• pmids : CBinsGlyph::SSnp
• PNGOptionsDialog() : PNGOptionsDialog
• PNocase_Conditional_Generic() : PNocase_Conditional_Generic< T >
• pointer : pythonpp::CSequnceHelper< T >, pythonpp::CDictHelper< T >, CSyncQueue_priority_queue< Type, Container, Compare >, CSyncQueue_I< Type, Container, TNativeIterator >, CRangeMapIterator< Traits >, CRangeMapConstIteratorTraits< MapTraits >, CRangeMapIteratorTraits< MapTraits >, bm::bvector< Alloc, MS >::enumerator, bm::bvector< Alloc, MS >::insert_iterator, CSeqVectorTypes, xml::node_set::const_iterator, xml::node_set::iterator, xml::node::const_iterator, xml::node::iterator, xml::attributes::const_iterator, xml::attributes::iterator, CAttrRangeCollection< Attr, Position >::const_pos_iterator, _Nonconst_traits< _Tp >, _Const_traits< _Tp >, hashtable< _Val, _Key, _HF, _ExK, _EqK, _All >, _Ht_iterator< _Val, _Traits, _Key, _HF, _ExK, _EqK, _All >, tree< T, tree_node_allocator >::iterator_base, CMultiAlignerOptions::CPattern::SPattern
• pointer_type : CTrSequence< bitst, bitsc >::C_ReverseIterator< Item >, CTrSequence< bitst, bitsc >
• pointerValue : AnyType
• PointInRect() : CSeqGlyph
• PoissonDist() : CDistMethods
• PoissonOnly : CSearch< LEGACY, NHITS >
• poll : SPOLLABLE_Poll
• Poll() : CSocketAPI, CPipe
• PollMessageFile() : FileMessenger
• PollMessageFiles() : FileMessagingManager
• PolyALen() : CAlignModel
• pool_ : COffsetList::CDataPool
• Pool_ : COffsetList::CData
• PoolName() : CDB_Connection, I_Connection, impl::CConnection
• pop() : mu::ParserStack< TValueType >
• Pop() : CSeqDBAliasStack, CSyncQueue< Type, Container >, CQuickSortStack, impl::CDBHandlerStack, CDB_MultiEx, CDBServiceMapperCoR, CConnValidatorCoR
• pop_back() : CAlignRangeCollection< TAlnRange >
• pop_front() : CSyncQueue_priority_queue< Type, Container, Compare >, CSyncQueue_multiset< Key, Compare, Allocator >, CSyncQueue_set< Key, Compare, Allocator >
• PopCntxMsgHandler() : I_DriverContext, impl::CDriverContext
• PopDefConnMsgHandler() : I_DriverContext, impl::CDriverContext
• popDir() : CMsHdf5
• PopEntityLexer() : XSDParser, DTDParser
• PopErrorFrame() : CObjectStack
• PopFrame() : CObjectStack
• popId : CLDBlockGlyph::SValue
• PopMatrix() : OpenGLRenderer
• PopMsgHandler() : CDB_Connection, I_Connection, impl::CConnection
• PopResolve() : SSeqMapSelector
• PopsetStyle() : CAlnVecPrinter
• PopTempSite() : CGuiRegistry
• poptions : dfa_match_data
• PopulateDeletion1() : oligofar::CQueryHash
• PopulateDeletion2() : oligofar::CQueryHash
• PopulateDeletions() : oligofar::CQueryHash
• PopulateHash() : oligofar::CHashPopulator
• PopulateInsertion1() : oligofar::CQueryHash
• PopulateInsertion2() : oligofar::CQueryHash
• PopulateInsertions() : oligofar::CQueryHash
• PopulateOidList() : COMSSASearch
• PopulateReplaced() : CTaxon1
• PopulateWindow() : oligofar::CQueryHash
• PopupADialog() : CSearchFormBase, IDMSearchForm
• PopupFile() : CAppPopup
• PopupURL() : CAppPopup
• PopVerbosity() : CReadBlastApp
• port : SOCK_tag, LSOCK_tag, SSockConnector, SSERV_IterTag, SServiceConnectorTag, SFTPConnector, SQueueDescription, SNS_Parameters, SJS_Request, tds_connection, tds_login, SServerAddress, CNetScheduleKey, CNetScheduleAdmin::SWorkerNodeInfo, SSERV_Info, SConnNetInfo
• pos : SQueueInfo, SQueueDbBlock, SQueueDescriptionDB, CQueryParseNode::SSrcLoc, bm::bvector< Alloc, MS >::iterator_base::bitblock_descr, CFastaReader::SGap, CLDS_Query::SObjectDescr, CGlTube< Curve >::SRingPos
• Pos() : CNmerIterator
• Pos2Index() : CSRSearch
• pos_ : CNmerIterator
• pos_extnt : _PSIAlignedBlock
• pos_to_tag : SFieldsDescription
• pos_type : CSequenceIStreamFasta
• posDistinctDistrib : _PSISequenceWeights
• posDistinctDistrib_size : _PSISequenceWeights
• posFreqs : Kappa_posSearchItems
• posit : CNPiece
• position : pythonpp::CSequnceHelper< T >::const_iterator, pythonpp::CSequnceHelper< T >::iterator, CSparseKmerCounts::SVectorElement
• position_ : bm::bvector< Alloc, MS >::iterator_base, bm::bvector< Alloc, MS >::reference
• position_type : CRangeMultimap< Mapped, Position >, CRangeMap< Mapped, Position >, CRangeMapBase< Traits >, CRangeMapIterator< Traits >, CRangeMapTraitsBase< Position, Mapped >, CRangeCollection< Position >, CRange< Position >, COpenRange< Position >, bm::encoder, PAlignRangeFromLess< TAlignRange >, PAlignRangeToLess< TAlignRange >, CAlignRangeCollExtender< TColl >::PItLess, CAlignRangeCollExtender< TColl >, CAlignRangeCollection< TAlnRange >, CAlignRange< Position >, CDiagRangeCollection::PItLess, PItLess< TAlnRng >, PRangeLess< Range >, CAttrRangeCollection< Attr, Position >, CDenMapRunIterator< CntType >, CLocalRange< Position >
• positionBased : BlastGapAlignStruct, Blast_RedoAlignParams, Blast_MatrixInfo
• posMatrix : Kappa_posSearchItems
• posNumParticipating : _PSISequenceWeights
• posPrivateMatrix : Kappa_posSearchItems
• PosProfileMap : ResidueProfiles
• PossiblyGarbageCollect() : CSeqDBAtlas
• Post() : CCompatDiagHandler, CWindowsCmdErrorHandler, CCommentDiagHandler, CwxLogDiagHandler, CEventHandler::CPostQueue, CEventHandler, CSysLog, CSemaphore, CFileDiagHandler, CFileHandleDiagHandler, CStreamDiagHandler, CDiagHandler
• post_order_iterator() : tree< T, tree_node_allocator >::post_order_iterator
• PostAdvance() : CSeqMaskerScoreMin, CSeqMaskerScoreMeanGlob, CSeqMaskerScoreMean, CSeqMaskerScore
• PostBadDateError() : CValidError_imp
• PostBuildEvent() : CMsvcTools
• PostCount() : CSparseKmerCounts
• PostCreateWindow() : CGBenchGUI, IWorkbenchAdvisor, CFrameworkDemoGUI
• PostErr() : CValidError_base, CValidError_imp
• postfix : CondensedColumnUnaligned
• PostInit() : CGBenchGUI, IWorkbenchAdvisor, CFrameworkDemoGUI
• PostMsg() : impl::CDBHandlerStack
• PostObjErr() : CValidError_imp
• PostRead() : CClassPrePostReadWrite< Class >, CSeq_descr, CPluginObject, CAbstractProjectItem
• PostRedrawAllSequenceViewers() : Messenger
• PostRedrawAllStructures() : Messenger
• PostRedrawMolecule() : Messenger
• PostRedrawSequenceViewer() : Messenger
• PostViewManagerInitialized() : CGBenchGUI, IWorkbenchAdvisor, CFrameworkDemoGUI
• PostWrite() : CClassPrePostReadWrite< Class >
• power_matrix : MatrixData
• ppi : _Rcx_Ptl
• ppos : hitStr
• pr : _Thd_Tbl
• pre_order_iterator() : tree< T, tree_node_allocator >::pre_order_iterator
• pre_pipe : BlastHSPStream
• pReadBuffer : CRmOutReader
• PreAdvance() : CSeqMaskerScoreMin, CSeqMaskerScoreMeanGlob, CSeqMaskerScoreMean, CSeqMaskerScore
• PreBuildEvent() : CMsvcTools
• PreBuilds() : CMsvcPrjProjectContext
• Precision : CDB_Numeric, DBCOL
• precision : tagSQL_NUMERIC_STRUCT, tdsnumeric, dbtypeinfo, DBNUMERIC, _cs_param, _cs_datafmt, _cs_numeric
• PRecLineLess() : CAlnMultiModel::SRowRecord
• PreComputeImageDimensions() : CGuideTree
• PreCount() : CSparseKmerCounts
• PreCreateDataSource() : CAlnMultiDSBuilder
• PrecursorDelta : CMod
• PrecursorMassArray : CSearch< LEGACY, NHITS >
• Precursormz : CMSPeak
• PrecursorTol : CMSPeak
• PreDestroyWindow() : CGBenchGUI, IWorkbenchAdvisor, CFrameworkDemoGUI
• predicate_sort_by_leaves_count() : CPhyloTreeNode::predicate_sort_by_leaves_count
• Predict() : CSignalSeq, CGnomonAnnotator
• PredictRegions() : CCoiledCoil
• PredictSites() : CAntigenic
• pref : SSERV_IterTag
• PREF_TAXNODE_FILE : CPriorityTaxNodes
• PreferencesDialog() : PreferencesDialog
• preferFeats : CLDBlockDS::SParams
• preferredFavoriteStyle : StructureWindow
• PreferredHeight() : CMapItem, IwxMapItem, CGroupMapWidget::CGroupItem
• PreferredSize() : CSequenceTickGraph, CSequenceTextGraph, CHitMatrixSeqGraph, CRuler, CProgressPanel, CRenderableImpl, IRenderable, CHistogramGraph, CGraphContainer, CTraceGraph, CAlignedFeatureGraph, CFeatureGraph, CAlnMultiHeader
• Prefetch() : CDataSource
• PrefetchNotify() : IPrefetchListener, CObjectManagerEngine
• PREFIX : CWriteDB_PackedSemiTree
• prefix : SHeader, CondensedColumnUnaligned
• prefix_ : xml::ns
• prefix_len : BCP_HOSTCOLINFO
• prefixes : SAccGuide::SSubMap
• prefs : MatrixInfo
• prefTaxnode : CTaxNRItem
• prelim_hitlist_size : BlastHSPCullingParams, BlastHSPCollectorParams, BlastHSPBestHitParams, SBlastHitsParameters
• PreLinkEvent() : CMsvcTools
• PRemoveSynAnamorph() : PRemoveSynAnamorph
• Prepare() : CGridControlThread, oligofar::CSeqScanner::C_LoopImpl_ColorspAmbiguities, oligofar::CSeqScanner::C_LoopImpl_ColorspNoAmbiguities, oligofar::CSeqScanner::C_LoopImpl_Ncbi8naAmbiguities, oligofar::CSeqScanner::C_LoopImpl_Ncbi8naNoAmbiguities
• prepare() : SeqTree
• PrepareBlastUngappedSeqalign() : CDisplaySeqalign
• PrepareCall() : CConnection, IConnection
• PrepareCmd() : SAnnotCmdPreparer< type >
• prepareCollapsedNodes() : SeqTree
• PrepareContext() : CRenderingContext, CGraphPanel
• prepared_pos : _hstmt
• prepared_query : _hstmt
• prepared_query_is_func : _hstmt
• prepared_query_is_rpc : _hstmt
• PrepareDBT_ForRead() : CBDB_BufferManager
• PrepareDBT_ForWrite() : CBDB_BufferManager
• PrepareDirectWrite() : CBufferedSockReaderWriter
• PrepareFields() : CQueue
• PrepareForPython() : pythonpp::CExtModule< T >, pythonpp::CExtObject< T >
• PrepareJobData() : CGridCgiSampleApplication, CCgiTunnel2Grid, CCgi2RCgiApp, CGridCgiApplication
• PrepareNextJob() : CGridJobBatchSubmitter
• PrepareSeqDB() : CSeqAlignFilter
• PrepareToStop() : CNCMMCentral
• PreparseArgs() : CNcbiApplication, CCgiApplication
• PrepereResolver() : CProjSRCResolver
• PreprocessorDefinitions() : SDll, SLib, SApp, SRelease, SDebug, CResourceCompilerToolDummyImpl, CResourceCompilerToolImpl< DebugReleaseTrait >, CCompilerToolImpl, IResourceCompilerTool, ICompilerTool
• PRequested() : PRequested< T >
• PreRead() : CClassPrePostReadWrite< Class >
• pres : CSRSearch::SHKData
• PreSearch() : CIndexedDb
• present : TExtRNA
• PreserveRows() : CAlignCleanup
• PreserveScope() : CSplign
• PreShutDown() : CGBenchGUI, IWorkbenchAdvisor, CFrameworkDemoGUI
• prev : internal_state, CMemStore::SMemBlock, BlastLinkedHSPSet, LinkHSPStruct, _hstmt
• Prev() : CSeqMap_CI, CAnnotTypes_CI
• prev_ : COffsetList::CData::CDataIterator
• prev_block_border_bit_ : bm::blocks_manager< Alloc, MS >::block_count_change_func
• prev_length : internal_state
• prev_match : internal_state
• prev_sibling : tree_node_< T >
• PrevExon() : CLastExon, CInternalExon, CFirstExon, CSingleExon
• prevfree : SHEAP_HeapBlock
• previous_sibling() : tree< T, tree_node_allocator >
• PreviousCount : SCallbackData
• previousVirtual : Bond
• prevMouseMode : ViewerWindowBase
• prevPickedAtomCoord : StructureSet
• prevrec : recursion_info
• PreWrite() : CClassPrePostReadWrite< Class >, CAbstractProjectItem
• primary_seqid : SLDS_ObjectDB
• Prime() : CTextFsm< MatchType >
• PrimitiveToString() : CDefaultTypeConverter
• Print() : CComments, CSeqDB_FilterTree, CDiagFilter, CDiagMatcher, CDiagStrErrCodeMatcher, CDiagStrPathMatcher, CDiagStrStringMatcher, CDiagStrEmptyMatcher, CDiagStrMatcher, CTrSequence< bitst, bitsc >, CTrVector< T >, oligofar::CSpacialRanges, oligofar::CSnpDbBase, oligofar::CHashPopulator, oligofar::CAligner::CDiagonalScores, CQueueClientInfoList, CNetSchedule_AccessList, CNCServerStat, CNCMMStats, CNCDBStat, CQueryParseTree, CMaskWriterSeqLoc, CMaskWriterInt, CMaskWriterFasta, CMaskWriterBlastDbMaskInfo, CMaskWriter, CBlastTabularInfo, CMultiAlnPrinter, CSize, CSeq_annot_SplitInfo, CLocObjects_SplitInfo, CSeqsRange, CNCBINode, CHTMLComment, CSeqGraphicWidget, CPhyloTreeWidget, CAlnMultiWidget, CVectorPrinter, CPluginValue, CVersion, CComponentVersionInfo, CVersionInfo, CDiagContext_Extra, CArgs, CWNJobsWatcher, CCdFromFasta::Fasta2CdParams, CRowSelector, CMultiAlignerVersion, CSparseKmerCounts, CBlastVersion
• print() : SGFFrec, CSeqref
• PrintableString() : NStr
• printAlignment() : PssmMaker
• printAlignmentByColumn() : PssmMaker
• PrintAllJobDbStat() : CQueue
• PrintAllMessages() : CAgpErrEx
• PrintAnchoredAln() : CAlnBuildApp
• PrintAsciiPssm() : CBlastFormatUtil
• PrintASN() : CBlockDataValue, CNamedDataValue, CIdDataValue, CBitStringDataValue, CDataValueTmpl< Type >, CNullDataValue, CDataValue, CUniSequenceDataType, CDataType, CAnyContentDataType, CStaticDataType, CClientPseudoDataType, CReferenceDataType, CFileSet, CFileModules, CDataTypeModule, CEnumDataType, CComments, CChoiceDataType, CWsdlDataType, CDataMemberContainerType, CDataMember
• PrintASNRefInfo() : CFileModules
• PrintASNTypeComments() : CDataType
• PrintBatchErrors() : CAsnvalApp
• PrintBatchItem() : CAsnvalApp
• PrintBegin() : CHTMLPageStat, CNCBINode, CHTMLPopupMenu, CHTML_hr, CHTML_br, CHTML_table, CHTMLComment, CHTMLSingleElement, CHTMLOpenElement, CHTMLText, CHTMLPlainText
• PrintBuffer() : CVectorPrinter, CPostscript
• PrintChildren() : CHTMLPage, CNCBINode, CHTML_tr, CHTML_html, CHTMLSpecialChar, CHTMLListElement, CHTMLDualNode, CHTMLTagNode, CAsnWriteNode
• PrintClause() : CAutoDefFeatureClause_Base
• PrintCmdOutput() : CNetService
• PrintConfig() : CNetCacheAdmin
• PrintCSV() : CMSResponse
• PrintDbReport() : CAlignFormatUtil
• PrintDebug() : oligofar::CMappedAlignment, oligofar::CHit, oligofar::CHashAtom
• PrintDetails() : CReadBlastApp
• PrintDTD() : CDataType, CFileSet, CFileModules, CDataTypeModule, CComments, CDataMember
• PrintDTDElement() : CUniSequenceDataType, CDataType, CAnyContentDataType, CStaticDataType, CClientPseudoDataType, CReferenceDataType, CEnumDataType, CWsdlDataType, CDataMemberContainerType
• PrintDTDExtra() : CUniSequenceDataType, CDataType, CBoolDataType, CReferenceDataType, CEnumDataType, CDataMemberContainerType
• PrintDTDModular() : CFileSet, CFileModules, CDataTypeModule
• PrintDTDTypeComments() : CDataType
• PrintElement() : CQueryTreePrintFunc
• PrintEnd() : CNCBINode, CHTML_tr, CHTMLComment, CHTMLBlockElement, CHTMLElement, CHTMLInlineElement
• PrintEnzymes() : COMSSABase
• PrintEpilog() : CBlastFormat
• PrintExtra() : CDiagContext
• PrintFormattedOutput() : CBlastFormatterApp
• PrintFullName() : CNamespace
• PrintFwd() : CTrSequence< bitst, bitsc >, CTrVector< T >
• printGeneralInfo() : CReadBlastApp
• PrintHeader() : CBlastTabularInfo, CBDB_FileDumper
• PrintHealth() : CNetCacheAdmin
• PrintHosts() : CNetSchedule_AccessList
• PrintHPPClass() : CComments
• PrintHPPComments() : CTypeStrings
• PrintHPPEnum() : CComments
• PrintHPPMember() : CComments
• PrintId() : CMaskWriter, CAlnMapPrinter
• PrintInfo() : CParse, CGnomonEngine
• PrintIons() : COMSSABase
• PrintIupac() : oligofar::CQuery
• PrintJobDbStat() : CQueue
• PrintJobInfo() : CRemoteAppClientSampleApp, CNSSubmitRemoteJobApp
• PrintJobStatusMatrix() : CQueue
• PrintKAParameters() : CAlignFormatUtil
• PrintLevelMargin() : CQueryTreePrintFunc, CTreePrintFunc< TTreeNode, TConverter >
• PrintLine() : CAgpErrEx
• PrintLockStat() : CQueueDataBase, CNetScheduleServer, CBDB_Env
• printMat() : DistanceMatrix
• PrintMemStat() : CQueueDataBase, CNetScheduleServer, CBDB_Env
• PrintMergedAln() : CAlnMrgApp
• PrintMessage() : CAgpErrEx
• PrintMessageCounts() : CAgpErrEx
• PrintMods() : COMSSABase
• PrintMsg() : CCgiContext
• PrintMutexStat() : CQueueDataBase, CNetScheduleServer, CBDB_Env
• PrintNewickTree() : CGuideTree
• PrintNexusTree() : CGuideTree
• PrintNumProcessed() : CBlastTabularInfo
• PrintNumRow() : CAlnMapPrinter
• PrintObject() : CVectorPrinter, CPostscript, CPdf
• PrintOneResultSet() : CBlastFormat
• printOverlapReport() : CReadBlastApp
• PrintPage() : CVectorOutput< T >
• PrintParams() : CBLASTParams
• printPerfectHit() : CReadBlastApp
• PrintPhiInfo() : CAlignFormatUtil
• PrintPhiResult() : CBlastFormat
• PrintProlog() : CBlastFormat
• PrintProperties() : CDiagContext
• PrintPSSM() : BMAUtils
• PrintPSSMByColumn() : BMAUtils
• PrintPSSMByRow() : BMAUtils
• PrintPSSMForColumn() : BMAUtils
• PrintPSSMForRow() : BMAUtils
• PrintQ() : oligofar::CAligner
• PrintQueue() : CQueue, CNetScheduleAdmin
• PrintReport() : CSequenceInputStats
• printReport() : CReadBlastApp
• PrintRequestStart() : CDiagContext
• PrintRequestStop() : CDiagContext
• PrintRev() : CTrSequence< bitst, bitsc >, CTrVector< T >
• PrintS() : oligofar::CAligner
• PrintSampleDEF() : CFileSet, CFileModules, CDataTypeModule
• PrintSeq() : oligofar::CQuery
• PrintSeqPos() : CAlnMapPrinter
• PrintSequence() : CRowSelector
• PrintServerStatistics() : CNetScheduleAdmin
• PrintServerStats() : CNetCacheServer
• PrintServerVersion() : CNetScheduleAdmin
• PrintSpecDump() : CDataType, CFileSet, CFileModules, CDataTypeModule, CDataMember
• PrintSpecDumpExtra() : CUniSequenceDataType, CDataType, CEnumDataType, CDataMemberContainerType
• printSpectra() : CMsHdf5
• PrintStart() : CDiagContext
• PrintStat() : CQueue, CNCBlobStorage, CGBRequestStatistics, CBDB_RawFile, CNetCacheAdmin
• PrintStatistics() : oligofar::CAligner, CGBRequestStatistics, SBDB_CacheStatistics, SBDB_CacheUnitStatistics
• PrintStats() : CNCMemManager
• PrintStatusMatrix() : CJobStatusTracker
• PrintStop() : CDiagContext
• PrintString() : CHTMLText
• PrintSubmHosts() : CQueue
• PrintTables() : CChecksum
• PrintTagName() : CObjectOStreamXml
• PrintTildeSepLines() : CAlignFormatUtil
• PrintTo() : CPdfTrailer, CPdfObject, CPdfDictionary, CPdfArray, CPdfIndirectObj, CPdfName, CPdfString, CPdfNumber, CPdfTranslate, CPdfRotate, CPdfObj, CRgbaColor, CBBox< N >, CPVecLine, CPVecPoint
• PrintTotals() : CAgpValidateReader, CAltValidator, CAgpErrEx
• PrintTree() : oligofar::CSpacialRanges, CTree
• printTSE() : CSeqref
• PrintUnalignedBlocksByColumn() : BMAUtils
• PrintUsage() : CArgDesc_agp_validate, CArgDescriptions
• PrintUsageIfNoArgs() : CArgDescriptions
• PrintUsageXml() : CArgAllow_Regexp, CArgAllow_Doubles, CArgAllow_Int8s, CArgAllow_Strings, CArgAllow_String, CArgAllow_Symbols, CArgAllow, CArgDescriptions
• PrintValidErrItem() : CAsnvalApp
• PrintValidError() : CAsnvalApp
• PrintValue() : CIniParser, CIniPrint, COptHelp, COptVersion, COptArgList< List >, COptArgSet< Set >, COptArg< pair< T, T > >, COptArg< bool >, COptArg< string >, COptArg< T >, COptChoice< T >, COptFlags< T >, COptFlag< T >, COption
• PrintVersion() : CSplitCacheApp
• PrintWNodeHosts() : CQueue
• PrintWorkerNodeStat() : CQueue
• PrintXml() : CArgDesc
• PrintXMLRefInfo() : CFileModules
• PrintXMLSchema() : CUniSequenceDataType, CDataType, CAnyContentDataType, CStaticDataType, CClientPseudoDataType, CReferenceDataType, CFileSet, CFileModules, CDataTypeModule, CEnumDataType, CWsdlDataType, CDataMemberContainerType, CDataMember
• PrintXMLSchemaContents() : CBitStringDataType, CBoolDataType, CNullDataType, CStaticDataType
• PrintXMLSchemaModular() : CFileSet, CFileModules, CDataTypeModule
• priority : CMultiDictionary::SDictionary
• priv_msg_type : tds_message
• private_env : SNSDBEnvironmentParams
• PrivateShowResidues() : ShowHideManager
• prob : Blast_ResFreq, Blast_AminoAcidComposition
• prob0 : Blast_ResFreq
• probability : SPHIQueryInfo
• Probe() : CObjectsSniffer
• ProbeASN1_Bin() : CObjectsSniffer
• ProbeText() : CObjectsSniffer
• problems : diagStr
• ProblemType() : CReadBlastApp
• ProbNormalize() : CScoreVector< Key, Score >, CRawScoreVector< Key, Score >
• ProbScore() : oligofar::CScoreTbl
• proc : _cs_servermsg
• proc_name : tds_message
• ProccntUsage : tagMODULEENTRY32
• process() : CWinMaskCountsGenerator
• Process() : CFatalRequest, CCompressionStreambuf, CResolveRequest, CResolveRequestFatal, CNamedPipeDefClient, CSocketRequest, CWorkerNodeRequest, CUnknownProcessor, CGetLoadProcessor, CGetStatisticsProcessor, CShutdownProcessor, CGetVersionProcessor, CServerConnectionRequest, CAcceptRequest, CSeqEntryPresenter, CSplitCacheApp, oligofar::CSeqVecProcessor, oligofar::CFaDiceApp, CTruncateRequest, SU_PSSMInput, CNullPssmInput, CPssmInputFlankingGaps, CStdRequest, CZipDecompressor, CZipCompressor, CCompressionProcessor, CBZip2Decompressor, CBZip2Compressor, CSerial_FilterObjectsHook< TObject >, CProcessor_ExtAnnot, CReadDispatcher, CGeneFileWriter::CGene2PMProcessor, CGeneFileWriter::CGeneInfoProcessor, CGeneFileWriter::CGene2AccnProcessor, CGeneFileWriter::CLineProcessor, CAppJobRequest, IAppNamedPipeClient, CThreadedServer, CWorkerNodeControlServer::IRequestProcessor, CdPssmInput, IPssmInputFreqRatios, IPssmInputData, CPsiBlastInputData, CPsiBlastInputFreqRatios, CPsiBlastInputClustalW
• Process_fasta() : oligofar::CSeqVecProcessor
• Process_SeqDB() : oligofar::CSeqVecProcessor
• process_vertex() : DFS
• process_xinclude() : xml::document
• process_xincludes() : xslt::init
• ProcessActiveCount() : CNetScheduleHandler
• processAnnot() : CReadBlastApp
• ProcessArgument() : CArgDesc_Alias, CArgDesc_Flag, CArgDescMandatory, CArgDesc_NameOnly, CArgDesc
• ProcessArgVector() : CQueryFunction_BV_Base< BV >
• ProcessBatchSequenceEnd() : CNetScheduleHandler
• ProcessBatchStart() : CNetScheduleHandler
• ProcessBioSource() : CAsnvalApp
• processBlastHits() : CSimpleB2SWrapper, GroupUpdater, CDUpdater, UpdaterInterface, CdBlaster
• ProcessBlob() : CSplitCacheApp
• ProcessBlobFromID2Data() : CProcessor
• ProcessBoundaryOffset() : CSearch_Base< LEGACY, NHITS, derived_t >
• ProcessCancel() : CNetScheduleHandler
• ProcessCDD() : CReadBlastApp
• ProcessClearWorkerNode() : CNetScheduleHandler
• ProcessCommand() : CommandProcessor
• ProcessCommandLineArgs() : CBlastDemoApplication
• ProcessComment() : DTDLexer
• ProcessConfirm() : CNetScheduleHandler
• ProcessCreateQueue() : CNetScheduleHandler
• ProcessData() : CDataTool, oligofar::COligoFarApp, CProcessor_ID2
• ProcessDefault() : CArgDesc_Alias, CArgDesc_Flag, CArgDescDefault, CArgDescOptional, CArgDescMandatory, CArgDesc_NameOnly, CArgDesc
• ProcessDefine() : CMsvcConfigure
• ProcessDeleteQueue() : CNetScheduleHandler
• ProcessDir() : CProjectTreeBuilder
• ProcessDocumentation() : XSDLexer
• ProcessDropJob() : CNetScheduleHandler
• ProcessDropQueue() : CNetScheduleHandler
• ProcessDump() : CNetScheduleHandler
• ProcessEndpointTypes() : WSDLParser
• ProcessError() : CNetScheduleHandler, CReaderBase
• ProcessEvent() : CWindowManager, CDockPanel, CGlZoomLens, CGlWidget, CGlContainer, CWorkbench, CWorkbenchFrame
• ProcessFastStatusS() : CNetScheduleHandler
• ProcessFastStatusW() : CNetScheduleHandler
• processFeature() : CReadBlastApp
• ProcessFiles() : CMzXML2hdf5Application, CGeneFileWriter
• ProcessFinalize() : CTitleProcess, CProsplignProcess, CGeneOverlapProcess, CFastaProcess, CDeflineProcess, CSeqEntryProcess
• ProcessForceReschedule() : CNetScheduleHandler
• ProcessGetAffinityList() : CNetScheduleHandler
• ProcessGetConfiguration() : CNetScheduleHandler
• ProcessGetJob() : CNetScheduleHandler
• ProcessGetMessage() : CNetScheduleHandler
• ProcessGetParam() : CNetScheduleHandler
• ProcessGi() : CSplitCacheApp
• ProcessHttpReferer() : CCgiApplication
• processing_instruction() : xml::event_parser
• ProcessInitialize() : CTitleProcess, CScopedProcess, CProsplignProcess, CNullProcess, CMacroTestProcess, CGeneOverlapProcess, CFastaProcess, CDeflineProcess, CCleanupProcess, CSeqEntryProcess
• ProcessInitWorkerNode() : CNetScheduleHandler
• ProcessJobDelayExpiration() : CNetScheduleHandler
• ProcessJobExchange() : CNetScheduleHandler
• ProcessJobRunTimeout() : CNetScheduleHandler
• ProcessList() : oligofar::CSeqVecProcessor
• ProcessLocationMacros() : CProjBulderApp
• ProcessLog() : CNetScheduleHandler
• ProcessMacros() : CMsvcSite
• ProcessMakeAppFile() : CProjectTreeBuilder
• ProcessMakeDllFile() : CProjectTreeBuilder
• ProcessMakeInFile() : CProjectTreeBuilder
• ProcessMakeLibFile() : CProjectTreeBuilder
• ProcessMatch() : oligofar::CFilter
• ProcessModules() : CDataTool
• ProcessMonitor() : CNetScheduleHandler
• ProcessMsgAuth() : CNetScheduleHandler
• ProcessMsgBatchHeader() : CNetScheduleHandler
• ProcessMsgBatchJob() : CNetScheduleHandler
• ProcessMsgBatchSubmit() : CNetScheduleHandler
• ProcessMsgQueue() : CNetScheduleHandler
• ProcessMsgRequest() : CNetScheduleHandler
• ProcessNamedTypes() : XSDParser
• ProcessNewFetch() : CBDB_ResultStore< TBV >::CResultStoreEnumerator
• ProcessObjStream() : CProcessor_ID2AndSkel, CProcessor_ID2, CProcessor_St_SE, CProcessor_SE_SNP, CProcessor_SE, CProcessor_ID1_SNP, CProcessor_ID1, CProcessor
• ProcessOffset() : CSearch_Base< LEGACY, NHITS, derived_t >
• processor : CNetScheduleHandler::SCommandExtra, CNCMessageHandler::SCommandExtra
• ProcessOverflow() : CThreadedServer
• processPendingToNormal() : CDUpdater
• ProcessPrintQueue() : CNetScheduleHandler
• ProcessPubdesc() : CAsnvalApp
• ProcessPut() : CNetScheduleHandler
• ProcessPutFailure() : CNetScheduleHandler
• ProcessPutMessage() : CNetScheduleHandler
• ProcessQList() : CNetScheduleHandler
• ProcessQuery() : CNetScheduleHandler
• ProcessQueue() : CAltValidator
• ProcessQueueInfo() : CNetScheduleHandler
• ProcessQuitSession() : CNetScheduleHandler
• ProcessReadFailed() : CNetScheduleHandler
• ProcessReading() : CNetScheduleHandler
• ProcessReadRollback() : CNetScheduleHandler
• ProcessRedraws() : Messenger
• ProcessRegisterClient() : CNetScheduleHandler
• ProcessReleaseFile() : CAsnvalApp
• ProcessReloadConfig() : CNetScheduleHandler
• ProcessRequest() : CCgiSampleApplication, CHelloApp, CCgiSessionSampleApplication, CCgiSampleApplication, CPhyloTreeCGIApplication, CGBenchSampleCgi, CGBenchIndexCgi, CNetCacheBlobFetchApp, CRemoteAppDispatcher, CCgiTunnel2Grid, CBlastHitMatrixCGIApplication, CStdThreadInPool, CThreadInPool< TRequest >, CSoapServerApplication, CGridCgiApplication, CCgiRedirectApplication, CGlCgiImageApplication, CCgiApplication
• ProcessResult() : CDB_ResultProcessor
• ProcessResultInternal() : CTL_Cmd
• ProcessResults() : CTL_CursorCmd
• ProcessReturn() : CNetScheduleHandler
• ProcessRoot() : CSearch_Base< LEGACY, NHITS, derived_t >
• ProcessSelectQuery() : CNetScheduleHandler
• ProcessSeqAlign() : CVecscreen
• ProcessSeqAnnot() : CAsnvalApp
• ProcessSeqEntry() : CAsnvalApp
• ProcessSeqFeat() : CAsnvalApp
• ProcessSeqId() : CSplitCacheApp
• ProcessSeqSubmit() : CAsnvalApp
• ProcessShutdown() : CNetScheduleHandler
• ProcessStatistics() : CNetScheduleHandler
• ProcessStatus() : CNetScheduleHandler
• ProcessStatusSnapshot() : CNetScheduleHandler
• ProcessStream() : CProcessor_ExtAnnot, CProcessor_St_SE_SNPT, CProcessor
• ProcessStreamRead() : CCompressionStreambuf
• ProcessStreamWrite() : CCompressionStreambuf
• ProcessSubmit() : CNetScheduleHandler
• ProcessSubmitBatch() : CNetScheduleHandler
• ProcessThisRow() : CAgpReader
• ProcessTimeout() : CThreadedServer, CWorkerNodeControlServer, CServer
• ProcessUnRegisterClient() : CNetScheduleHandler
• ProcessUserProjFile() : CProjectTreeBuilder
• ProcessVersion() : CNetScheduleHandler
• ProcessWaitGet() : CNetScheduleHandler
• proclen : _cs_servermsg
• ProcLine() : CDB_RPCEx
• ProcName() : CDB_RPCEx
• prod_matrix : MatrixData
• ProduceDebugOutput() : CBlastAppArgs, CDebugArgs
• ProduceDebugRemoteOutput() : CBlastAppArgs, CDebugArgs
• product : CFeatTableDS::SFeature
• product_name : tds_socket
• product_version : tds_socket
• ProductDelta : CMod
• profile_header : BlastRPSInfo
• prog : CNetScheduleAdmin::SWorkerNodeInfo
• prog_number : BlastKappa_GappingParamsContext, BlastKappa_SequenceInfo
• program : SQueryFactorySrcNewArgs, SMultiSeqSrcNewArgs, BlastHSPCullingParams, BlastHSPCollectorParams, BlastHSPBestHitParams, BlastHSPStream
• program_name : SQueueParameters
• program_number : TestFixture, BlastScoringOptions, BlastHitSavingOptions, BlastExtensionOptions, BlastInitialWordOptions, LookupTableOptions, SBlastTargetTranslation
• ProgramDatabaseFile() : CLinkerToolDummyImpl, CLinkerToolImpl< ConfTrait >, ILinkerTool
• ProgramDataBaseFileName() : CCompilerToolImpl, ICompilerTool
• progress_msg : SQueueDB, CNetScheduleJob
• ProgressCallback : MSAAInterface
• ProgressMeter() : ProgressMeter
• ProgressReport() : CSeqEntryPresenter
• Project() : CGlPane
• ProjectCDS() : ProjectCDS, CChainer
• ProjectDir() : CMsvcPrjProjectContext
• ProjectId() : CMsvcPrjProjectContext
• ProjectName() : CMsvcPrjProjectContext
• ProjectSelectedElems() : CHitMatrixPane
• ProjectType() : CMsvcPrjProjectContext
• ProjectX() : CGlPane
• ProjectY() : CGlPane
• PromoteCdregion() : CPromote
• PromoteFeatures() : CPromote
• promotePendingRows() : SeqSwapper
• PromotePub() : CPromote
• PromoteRna() : CPromote
• prop_ : xml::attributes::attr
• PropagateGaps() : CSequence
• prot_complet : CChainer::CChainerImpl
• prot_sid : SModelData
• ProtectedFunc() : CMyClass
• protein_alphabet : BlastScoreBlk
• proteinBackbone : StyleSettings
• ProteinHit() : CGeneModel
• proteinLabels : StyleSettings
• ProteinOptiosHandleFixture() : ProteinOptiosHandleFixture
• proteinSidechains : StyleSettings
• ProteinWithBigHole() : ProteinWithBigHole
• ProtNumber() : CSeqScores
• ProtOnlyAlignsCount() : CSeqIdAlignBitmap< TSeqAlignSeqIdVec >
• ProtonMass : CCleave
• ProtReadingFrame() : CCDSInfo
• ProvideItems() : CAutoCompleteCombo
• ProximitySort() : SequenceDisplay
• ProximitySortOff() : SequenceViewerWindow
• proxy_host : SConnNetInfo
• proxy_type : CWeakRef< C, Locker >
• PruneSeqalign() : CAlignFormatUtil
• PruneSeqalignAll() : CAlignFormatUtil
• ps : _Thd_Gsm, _Thd_Tbl
• pseudo_count : PSIBlastOptions
• pseudoCount : PssmMakerOptions
• psi_matrix : BlastScoreBlk
• psiBlast() : CdBlaster
• PSIBlastOptiosHandleFixture() : PSIBlastOptiosHandleFixture
• PsiblastSeqStatus : CShowBlastDefline
• PsiblastStatus : CShowBlastDefline
• PSourcesExclude() : PSourcesExclude
• PSpace() : CNWAligner::SAlignInOut
• Pssm() : CPsiBlastValidate
• pssm : PSSMWrapper, BlockMultipleAlignment, _PSIInternalPssmData, SPsiBlastScoreMatrix, PSIMatrix
• PssmMaker() : PssmMaker
• PssmMakerOptions() : PssmMakerOptions
• PssmScorer() : PssmScorer
• PSSMWrapper() : PSSMWrapper
• PStop() : CGeneModel, CCDSInfo
• PStops() : CCDSInfo
• PtInRect() : CGlRect< T >
• Ptr() : Check< T >
• ptr : bm::copy_to_array_functor_inc< B >, bm::copy_to_array_functor< B >, EState, SAsnConn_Cbdata, OpenGLRenderer::SpherePtr, LinkHelpStruct, bm::bvector< Alloc, MS >::iterator_base::dgap_descr, bm::bvector< Alloc, MS >::iterator_base::bitblock_descr, CNcbiEnvironment::SEnvValue, ListNode
• ptr_ : xml::impl::xmlchar_helper
• ptr_alloc_ : bm::mem_alloc< BA, PA >
• ptr_allocator_type : bm::mem_alloc< BA, PA >
• ptr_blocks_idx_ : pool_ptr_allocator
• PtrPtr() : Check< T >
• PtrToString() : NStr
• ptrType : CClassTypeStrings::SMemberInfo
• PullSearch() : CSearchToolBase, IDMSearchTool
• punctuation : SSequence
• purge() : array_set< T, Cmp >, array_map< K, V, Cmp, kCapacityIncrement >
• Purge() : oligofar::CBatch, CQueueDataBase, ICache, CSQLITE3_Cache, CDBAPI_Cache, CBDB_Cache, CNetICacheClient, CNWAligner::CBacktraceMatrix4
• PurgeAllHits() : CHitList
• PurgeCache() : CGBDataLoader
• PurgeDistMatrix() : CClusterer
• PurgeHit() : oligofar::CFilter
• PurgeNonAlphaFromCachedSequences() : CSeqAnnotFromFasta
• PurgeNonAlphaFromSequence() : CSeqAnnotFromFasta
• PurgeQueue() : oligofar::CFilter
• PurgeQueueToTheEnd() : oligofar::CFilter
• PurgeResults() : CStatement, IStatement
• PurgeSequence() : AlignmentManager
• PurgeUnwantedHits() : CHitList
• Push() : CSeqDBAliasStack, CSyncQueue< Type, Container >, CSearchControl, CSearchFormBase, IDMSearchForm, CQuickSortStack, impl::CDBHandlerStack, CDB_MultiEx, CDBServiceMapperCoR, CConnValidatorCoR
• push() : mu::ParserStack< TValueType >
• push_back() : oligofar::CPermutator8b::C_Entry, COffsetList::CData, CSyncQueue_priority_queue< Type, Container, Compare >, CSyncQueue_multiset< Key, Compare, Allocator >, CSyncQueue_set< Key, Compare, Allocator >, bm::bitblock_sum_adapter, bm::bitblock_store_adapter, CAlignRangeCollection< TAlnRange >, CSeqDB::TSequenceRanges, CAlnIdMap< _TAlnVec, TAlnSeqIdExtract >, xml::node, xml::document, CAttrRangeCollection< Attr, Position >, CStrTokenPosAdapter< TPosContainer >, CStrDummyTokenPos, CBlastQueryVector, CSearchResultSet
• PushBack() : CLayoutGroup, CRnaCdsGroup, CSocket
• Pushback() : CNlmZipBtRdr, CStreamByteSourceReader, CByteSourceReader, CStreamUtils
• PushCntxMsgHandler() : I_DriverContext, impl::CDriverContext
• PushDefConnMsgHandler() : I_DriverContext, impl::CDriverContext
• pushDir() : CMsHdf5
• PushEntityLexer() : XSDParser, DTDParser
• PushFrame() : CObjectStack
• PushFrameLong() : CObjectStack
• PushFront() : CLayoutGroup
• PushMatrix() : OpenGLRenderer
• PushMessage() : CDiagContext
• PushMsgHandler() : CDB_Connection, I_Connection, impl::CConnection
• PushResolve() : SSeqMapSelector
• PushTempSite() : CGuiRegistry
• PushVerbosity() : CReadBlastApp
• PushWritableTempSite() : CGuiRegistry
• Put() : CBlockingQueue< TRequest >, CResourcePool_Base< Value, Lock, CF >, CDeleteQueue< Key, Value >, CCalcSizeCache, CEntrezCache, CNcbiDiag
• put_16() : bm::encoder
• put_32() : bm::encoder
• put_8() : bm::encoder
• put_bit() : bm::bit_out< TEncoder >
• put_bits() : bm::bit_out< TEncoder >
• put_count : SBDB_TimeAccessStatistics
• put_prefixed_array_16() : bm::encoder
• put_prefixed_array_32() : bm::encoder
• put_zero_bit() : bm::bit_out< TEncoder >
• put_zero_bits() : bm::bit_out< TEncoder >
• putback() : CSequenceIStreamFasta, CSequenceIStreamBlastDB, CSequenceIStream
• PutBase() : CPluginManagerGetterImpl
• PutChain() : CNCMMChainsPool
• PutChar() : COStreamBuffer
• PutChunk() : CNCMMChunksPool
• PutData() : CNetCacheAPI
• PutDimVector() : CIdDeMux< TBV, TBVFact >
• PutDouble() : CByteSwap
• PutEol() : COStreamBuffer
• PutEolAtWordEnd() : COStreamBuffer
• PutError() : CErrorContainerCustom, CErrorContainerLevel, CErrorContainerCount, CErrorContainerStrict, CErrorContainerLenient, IErrorContainer, CWigLoadJob, CBedLoadJob
• PutFailure() : CGridThreadContext, CNetScheduleExecuter
• PutFloat() : CByteSwap
• PutImage() : wxFileArtNameAndImageCache
• PutIndent() : COStreamBuffer
• PutInt2() : CByteSwap
• PutInt4() : COStreamBuffer, CByteSwap
• PutInt8() : COStreamBuffer, CByteSwap
• putIntoMap() : CPriorityTaxNodes
• PutKey() : CBDB_BlobDictionary< Int4 >, CBDB_BlobDictionary< Uint4 >, CBDB_BlobDictionary< Key >, CBDB_PropertyDictionary< PropKey, PropValue >
• PutLock() : CTSE_LockSet
• PutMsg() : CCgiContext
• PutName() : wxFileArtNameAndImageCache
• PutObject() : CObjectPool< C >, CDataStore, CSingletonObjectStore< TKey, TObject >, CReverseObjectStore< TKey, TObject >
• PutPage() : CNCMMDBPagesHash
• PutProgressMessage() : CGridThreadContext, CQueue, CRemoteCgiApp, CWorkerNodeJobContext
• PutProgressMsg() : CNetScheduleExecuter
• PutResult() : CGridThreadContext, CNetScheduleExecuter
• PutResultGetJob() : CQueue, CNetScheduleExecuter
• PutString() : COStreamBuffer
• PutTargetGiFirst() : CBlast_def_line_set
• PutUint4() : COStreamBuffer
• PutUint8() : COStreamBuffer
• PutValue() : CDebugDumpFormatterText, CDebugDumpFormatter
• pv : BlastNaLookupTable, BlastRPSLookupTable, BlastCompressedAaLookupTable, BlastAaLookupTable
• pv_array : BlastMBLookupTable
• pv_array_bts : BlastMBLookupTable, BlastCompressedAaLookupTable
• pvalue : CGwasGlyph::SValue, CBinsGlyph::SSnp
• pvalues : CSeqMaskerOstatOpt, CSeqMaskerOstatBin

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