include/algo/align/prosplign/compartments.hpp File Reference

#include <corelib/ncbistl.hpp>
#include <corelib/ncbiargs.hpp>
#include <algo/align/splign/splign.hpp>
#include <objects/seqalign/seqalign__.hpp>

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Classes
class	CCompartOptions
struct	SCompartment
Typedefs
typedef vector< SCompartment >	TCompartmentStructs
typedef list< CRef< CSeq_annot > >	TCompartments
Functions
	USING_SCOPE (objects)
TCompartments	SelectCompartmentsHits (const CSplign::THitRefs &hitrefs, CCompartOptions compart_options)
	Makes compartments. Hits should be for a single protein-genomic pair.
TCompartmentStructs	MakeCompartments (const TCompartments &compartments_hits, CCompartOptions compart_options)
TCompartmentStructs	MakeCompartments (const CSplign::THitRefs &hitrefs, CCompartOptions compart_options)
	Composition of above two functions.

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Typedef Documentation

typedef list<CRef<CSeq_annot> > TCompartments

Definition at line 86 of file compartments.hpp.

typedef vector<SCompartment> TCompartmentStructs

Definition at line 85 of file compartments.hpp.

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Function Documentation

TCompartmentStructs MakeCompartments (  const CSplign::THitRefs &  hitrefs, CCompartOptions  compart_options )

Composition of above two functions. Definition at line 282 of file compartments.cpp. References MakeCompartments(), and SelectCompartmentsHits().

TCompartmentStructs MakeCompartments (  const TCompartments &  compartments_hits, CCompartOptions  compart_options )

Definition at line 236 of file compartments.cpp. Referenced by MakeCompartments().

TCompartments SelectCompartmentsHits (  const CSplign::THitRefs &  hitrefs, CCompartOptions  compart_options )

Makes compartments. Hits should be for a single protein-genomic pair. Referenced by MakeCompartments().

USING_SCOPE (  objects   )

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