CSeqGraphicWidget Class Reference

Search Toolkit Book for CSeqGraphicWidget

#include <seqgraphic_widget.hpp>

Inheritance diagram for CSeqGraphicWidget:

[legend]Collaboration diagram for CSeqGraphicWidget:

[legend]List of all members.

---

Detailed Description

Definition at line 122 of file seqgraphic_widget.hpp.

Event Handling
typedef CViewEvent	TEvent
typedef CVisibleRangeEvent	TVisibleRangeEvent
typedef CSelectionEvent	TSelectionEvent
void	OnSize (wxSizeEvent &event)
void	OnContextMenu (wxContextMenuEvent &event)
void	OnZoomObject (wxCommandEvent &event)
void	OnPrevSplice (wxCommandEvent &event)
void	OnNextSplice (wxCommandEvent &event)
void	OnCollapseAllTracks (wxCommandEvent &event)
void	OnExpandAllTracks (wxCommandEvent &event)
void	OnShowAllTracks (wxCommandEvent &event)
void	OnHideAllTracks (wxCommandEvent &event)
void	OnCollapseAllSubtracks (wxCommandEvent &event)
void	OnExpandAllSubtracks (wxCommandEvent &event)
void	OnMoveTrackToTop (wxCommandEvent &event)
void	OnMoveTrackToBottom (wxCommandEvent &event)
void	OnCloneTrack (wxCommandEvent &event)
void	OnRemoveTrack (wxCommandEvent &event)
void	OnAddTrack (wxCommandEvent &event)
void	OnZoomSelection (wxCommandEvent &event)
void	OnZoomSequence (wxCommandEvent &event)
void	OnUpdateZoomSelection (wxUpdateUIEvent &event)
void	OnUpdateZoomObject (wxUpdateUIEvent &event)
void	OnSetMarker (wxCommandEvent &event)
void	OnSetSeqMarkerDlg (wxCommandEvent &event)
void	OnResetMarker (wxCommandEvent &event)
void	OnResetSeqMarker (wxCommandEvent &event)
void	OnSetSwitchPoint (wxCommandEvent &event)
	wuliangs
void	OnSetSeqStart (wxCommandEvent &event)
void	OnSetSeqStartMarker (wxCommandEvent &event)
void	OnResetSeqStart (wxCommandEvent &event)
void	OnHairlineOptions (wxCommandEvent &event)
void	OnSeqGotoCmd (wxCommandEvent &event)
void	OnUpdateGoBack (wxUpdateUIEvent &event)
void	OnUpdateGoForward (wxUpdateUIEvent &event)
void	OnGoBack (wxCommandEvent &event)
void	OnGoForward (wxCommandEvent &event)
void	OnVertical (wxCommandEvent &event)
void	OnUpdateVertical (wxUpdateUIEvent &event)
void	OnUpdateSetSwitchPoint (wxUpdateUIEvent &event)
void	OnFlipStrands (wxCommandEvent &event)
void	OnUpdateFlipStrands (wxUpdateUIEvent &event)
void	OnEditCut (wxCommandEvent &event)
	editing interfaces
void	OnEditCopy (wxCommandEvent &event)
void	OnEditPaste (wxCommandEvent &event)
void	OnEditSelection ()
void	OnDeleteSelection ()
void	OnDeleteSelectionAndOrphaned ()
void	OnObjToRangeSelection ()
void	OnRangeToObjSelection ()
void	OnSeqGoto (CSequenceGotoEvent &event)
void	OnSeqGotoClose (CSequenceGotoEvent &event)
Public Types
typedef CRangeCollection< TSeqPos >	TRangeColl
Public Member Functions
	CSeqGraphicWidget (wxWindow *parent, wxWindowID id=wxID_ANY, const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxDefaultSize, long style=wxTAB_TRAVERSAL)
virtual	~CSeqGraphicWidget ()
virtual CGlPane &	GetPort ()
	implement these 2 functions in derived classes
virtual const CGlPane &	GetPort () const
void	OnDataChanged ()
void	SetInputObject (SConstScopedObject &obj)
	access the data source
CSGSequenceDS *	GetDataSource (void) const
void	SetExternalGlyphs (const CSeqGlyph::TObjects &objs)
void	ZoomOnRange (TSeqRange range, bool margins=true)
void	SetHorizontal (bool b_horz, bool b_flip)
bool	IsHorizontal () const
bool	IsFlipped () const
TModelRange	GetVisibleRange (void) const
	returns the visible sequence range
TSeqRange	GetVisibleSeqRange () const
bool	VisibleRangeChanged () const
	indicates visible sequence range has changes
void	ResetVisibleRangeChanged ()
void	SelectObject (const CObject *obj)
	set/clear selections
void	SelectSeqLoc (const objects::CSeq_loc *loc)
void	ResetSelection ()
void	ResetRangeSelection ()
void	ResetObjectSelection ()
void	Print (const CPrintOptions &opts)
	print hook
void	GetObjectSelection (TConstObjects &objs) const
	retrieve selected objects from this widget
const TRangeColl &	GetRangeSelection (void) const
	retrieve set of intervals selected on the sequence
void	SetRangeSelection (const TRangeColl &ranges)
void	GetRangeOrObjectSelection (TRangeColl &ranges) const
CRef< CSeqGraphicConfig >	GetConfig ()
	Here is the config object you are going to use to configure yourself.
void	UpdateConfig ()
	The config object has changed. Do what is necessary.
void	SetScaleX (TModelUnit scale, const TModelPoint &point)
void	UpdateHeight (TModelUnit height)
Static Public Member Functions
static void	RegisterCommands (CUICommandRegistry &cmd_reg, wxFileArtProvider &provider)
Protected Member Functions
CGlWidgetBase overridables
virtual void	x_CreatePane ()
	factory method creating master pane, called form x_CreateControls()
virtual CGlWidgetPane *	x_GetPane ()
virtual void	x_Update ()
	Update handlers.
virtual void	x_UpdatePane ()
virtual void	x_SetPortLimits ()
	updates model limits of the Master CGlPane
virtual void	x_SaveStates ()
Protected Attributes
CGlPane	m_Port
Private Types
typedef map< int, string >	TCmdToName
Private Member Functions
CLayoutTrack *	x_GetCurrentHitTrack ()
void	x_SaveDefaultScoringMethod (string name)
wxMenu *	x_CreatePopupMenu (int area)
	forbidden
Private Attributes
auto_ptr< CSeqGraphicPane >	m_SeqGraphicPane
TCmdToName	m_CmdToName
CSequenceGotoData	m_SequenceGotoData
CSequenceGotoDlg *	m_SequenceGotoDlg

---

Member Typedef Documentation

typedef map<int, string> CSeqGraphicWidget::TCmdToName [private]

Definition at line 318 of file seqgraphic_widget.hpp.

typedef CViewEvent CSeqGraphicWidget::TEvent

Definition at line 208 of file seqgraphic_widget.hpp.

typedef CRangeCollection<TSeqPos> CSeqGraphicWidget::TRangeColl

Definition at line 130 of file seqgraphic_widget.hpp.

typedef CSelectionEvent CSeqGraphicWidget::TSelectionEvent

Definition at line 210 of file seqgraphic_widget.hpp.

typedef CVisibleRangeEvent CSeqGraphicWidget::TVisibleRangeEvent

Definition at line 209 of file seqgraphic_widget.hpp.

---

Constructor & Destructor Documentation

CSeqGraphicWidget::CSeqGraphicWidget (  wxWindow *  parent, wxWindowID  id = wxID_ANY, const wxPoint &  pos = wxDefaultPosition, const wxSize &  size = wxDefaultSize, long  style = wxTAB_TRAVERSAL )

Definition at line 1128 of file seqgraphic_widget.cpp. References CGlPane::EnableZoom(), CGlPane::eOriginLeft, CGlPane::eOriginTop, CGlPane::fAdjustAll, kMaxPixelsBase, m_Port, CGlPane::SetAdjustmentPolicy(), CGlPane::SetMinScaleX(), and CGlPane::SetOriginType().

CSeqGraphicWidget::~CSeqGraphicWidget (   )  [virtual]

Definition at line 1143 of file seqgraphic_widget.cpp. References m_SequenceGotoDlg.

---

Member Function Documentation

CRef< CSeqGraphicConfig > CSeqGraphicWidget::GetConfig (   )

Here is the config object you are going to use to configure yourself. make sure all your children who need it have references to it. Definition at line 1245 of file seqgraphic_widget.cpp. References m_SeqGraphicPane. Referenced by OnHairlineOptions().

CSGSequenceDS * CSeqGraphicWidget::GetDataSource (  void   )  const

Definition at line 1213 of file seqgraphic_widget.cpp. References m_SeqGraphicPane. Referenced by OnSeqGoto(), x_SetPortLimits(), and ZoomOnRange().

void CSeqGraphicWidget::GetObjectSelection (  TConstObjects &  objs  )  const

retrieve selected objects from this widget Definition at line 1289 of file seqgraphic_widget.cpp. References m_SeqGraphicPane. Referenced by CViewGraphic::GetSelection(), and OnUpdateZoomObject().

const CGlPane & CSeqGraphicWidget::GetPort (   )  const [virtual]

Implements CGlWidgetBase. Definition at line 396 of file seqgraphic_widget.cpp. References m_Port.

CGlPane & CSeqGraphicWidget::GetPort (   )  [virtual]

implement these 2 functions in derived classes Implements CGlWidgetBase. Definition at line 390 of file seqgraphic_widget.cpp. References m_Port. Referenced by CSeqGraphicPane::MZHH_GetScale().

void CSeqGraphicWidget::GetRangeOrObjectSelection (  TRangeColl &  ranges  )  const

Definition at line 1307 of file seqgraphic_widget.cpp. References m_SeqGraphicPane, and CRangeCollection< Position >::size().

const CSeqGraphicWidget::TRangeColl & CSeqGraphicWidget::GetRangeSelection (  void   )  const

retrieve set of intervals selected on the sequence Definition at line 1296 of file seqgraphic_widget.cpp. References m_SeqGraphicPane. Referenced by CViewGraphic::GetSearchLoc(), and CViewGraphic::GetSelection().

TModelRange CSeqGraphicWidget::GetVisibleRange (  void   )  const [inline]

returns the visible sequence range Definition at line 349 of file seqgraphic_widget.hpp. References CGlPane::GetVisibleRect(), CGlRect< T >::Left(), m_Port, and CGlRect< T >::Right(). Referenced by CSeqGraphicPane::x_Render().

TSeqRange CSeqGraphicWidget::GetVisibleSeqRange (   )  const [inline]

Definition at line 356 of file seqgraphic_widget.hpp. References CGlPane::GetVisibleRect(), CGlRect< T >::Left(), m_Port, and CGlRect< T >::Right(). Referenced by CViewGraphic::GetVisibleRanges(), CSeqGraphicPane::NextPrevSplice(), CViewGraphic::OnVisibleRangeChanged(), and CSeqGraphicPane::SaveCurrentRange().

bool CSeqGraphicWidget::IsFlipped (   )  const

Definition at line 1251 of file seqgraphic_widget.cpp. References m_SeqGraphicPane. Referenced by OnFlipStrands(), OnUpdateFlipStrands(), and OnVertical().

bool CSeqGraphicWidget::IsHorizontal (   )  const

Definition at line 1233 of file seqgraphic_widget.cpp. References m_SeqGraphicPane. Referenced by OnFlipStrands(), OnUpdateVertical(), OnVertical(), and OnZoomSequence().

void CSeqGraphicWidget::OnAddTrack (  wxCommandEvent &  event  )

Definition at line 909 of file seqgraphic_widget.cpp. References _ASSERT, _T, CwxTrackSettingsDlg::GetTrackName(), CTrackContainer::IsTrackNameUsed(), m_SeqGraphicPane, CwxTrackSettingsDlg::SetFeatPanel(), CwxTrackSettingsDlg::SetMsg(), ToStdString(), NStr::TruncateSpacesInPlace(), and x_GetCurrentHitTrack().

void CSeqGraphicWidget::OnCloneTrack (  wxCommandEvent &  event  )

Definition at line 876 of file seqgraphic_widget.cpp. References _ASSERT, CTrackContainer::CloneTrack(), CLayoutTrack::GetFullTitle(), CLayoutTrack::GetId(), CLayoutTrack::GetParentTrack(), CwxTrackNameDlg::GetTrackName(), CTrackContainer::IsTrackNameUsed(), CwxTrackNameDlg::SetTrackName(), ToStdString(), ToWxString(), NStr::TruncateSpacesInPlace(), and x_GetCurrentHitTrack().

void CSeqGraphicWidget::OnCollapseAllSubtracks (  wxCommandEvent &  event  )

Definition at line 838 of file seqgraphic_widget.cpp. References CTrackContainer::ExpandAll(), and x_GetCurrentHitTrack().

void CSeqGraphicWidget::OnCollapseAllTracks (  wxCommandEvent &  event  )

Definition at line 815 of file seqgraphic_widget.cpp. References m_SeqGraphicPane.

void CSeqGraphicWidget::OnContextMenu (  wxContextMenuEvent &  event  )

Definition at line 1115 of file seqgraphic_widget.cpp. References eHorz, eVert, CGlWidgetBase::m_PopupPoint, m_SeqGraphicPane, CGlPoint< T >::m_X, CGlPoint< T >::m_Y, pos, x_CreatePopupMenu(), and CGlWidgetBase::x_ShowDecoratedPopupMenu().

void CSeqGraphicWidget::OnDataChanged (   )

Definition at line 402 of file seqgraphic_widget.cpp. References m_SeqGraphicPane. Referenced by CViewGraphic::OnProjectChanged().

void CSeqGraphicWidget::OnDeleteSelection (   )

void CSeqGraphicWidget::OnDeleteSelectionAndOrphaned (   )

void CSeqGraphicWidget::OnEditCopy (  wxCommandEvent &  event  )

Definition at line 945 of file seqgraphic_widget.cpp.

void CSeqGraphicWidget::OnEditCut (  wxCommandEvent &  event  )

editing interfaces Definition at line 939 of file seqgraphic_widget.cpp.

void CSeqGraphicWidget::OnEditPaste (  wxCommandEvent &  event  )

Definition at line 951 of file seqgraphic_widget.cpp.

void CSeqGraphicWidget::OnEditSelection (   )

void CSeqGraphicWidget::OnExpandAllSubtracks (  wxCommandEvent &  event  )

Definition at line 846 of file seqgraphic_widget.cpp. References CTrackContainer::ExpandAll(), and x_GetCurrentHitTrack().

void CSeqGraphicWidget::OnExpandAllTracks (  wxCommandEvent &  event  )

Definition at line 821 of file seqgraphic_widget.cpp. References m_SeqGraphicPane.

void CSeqGraphicWidget::OnFlipStrands (  wxCommandEvent &  event  )

Definition at line 657 of file seqgraphic_widget.cpp. References eCmdStrandFlipped, CEventHandler::eDispatch_Default, CEventHandler::ePool_Parent, IsFlipped(), IsHorizontal(), CEventHandler::Send(), and SetHorizontal().

void CSeqGraphicWidget::OnGoBack (  wxCommandEvent &  event  )

Definition at line 639 of file seqgraphic_widget.cpp. References m_SeqGraphicPane.

void CSeqGraphicWidget::OnGoForward (  wxCommandEvent &  event  )

Definition at line 645 of file seqgraphic_widget.cpp. References m_SeqGraphicPane.

void CSeqGraphicWidget::OnHairlineOptions (  wxCommandEvent &  event  )

Definition at line 679 of file seqgraphic_widget.cpp. References GetConfig(), CwxHairlineDlg::SetConfig(), and CGlWidgetBase::x_RedrawControls().

void CSeqGraphicWidget::OnHideAllTracks (  wxCommandEvent &  event  )

Definition at line 832 of file seqgraphic_widget.cpp. References m_SeqGraphicPane.

void CSeqGraphicWidget::OnMoveTrackToBottom (  wxCommandEvent &  event  )

Definition at line 865 of file seqgraphic_widget.cpp. References CLayoutTrack::GetId(), CLayoutTrack::GetParentTrack(), CTrackContainer::MoveTrackToBottom(), and x_GetCurrentHitTrack().

void CSeqGraphicWidget::OnMoveTrackToTop (  wxCommandEvent &  event  )

Definition at line 854 of file seqgraphic_widget.cpp. References CLayoutTrack::GetId(), CLayoutTrack::GetParentTrack(), CTrackContainer::MoveTrackToTop(), and x_GetCurrentHitTrack().

void CSeqGraphicWidget::OnNextSplice (  wxCommandEvent &  event  )

Definition at line 808 of file seqgraphic_widget.cpp. References CSeqGraphicPane::eDir_Next, and m_SeqGraphicPane.

void CSeqGraphicWidget::OnObjToRangeSelection (   )

Definition at line 957 of file seqgraphic_widget.cpp.

void CSeqGraphicWidget::OnPrevSplice (  wxCommandEvent &  event  )

Definition at line 801 of file seqgraphic_widget.cpp. References CSeqGraphicPane::eDir_Prev, and m_SeqGraphicPane.

void CSeqGraphicWidget::OnRangeToObjSelection (   )

Definition at line 962 of file seqgraphic_widget.cpp.

void CSeqGraphicWidget::OnRemoveTrack (  wxCommandEvent &  event  )

Definition at line 898 of file seqgraphic_widget.cpp. References _ASSERT, CLayoutTrack::GetId(), CLayoutTrack::GetParentTrack(), CTrackContainer::RemoveTrack(), and x_GetCurrentHitTrack().

void CSeqGraphicWidget::OnResetMarker (  wxCommandEvent &  event  )

Definition at line 719 of file seqgraphic_widget.cpp. References m_SeqGraphicPane, and CGlWidgetBase::x_RedrawControls().

void CSeqGraphicWidget::OnResetSeqMarker (  wxCommandEvent &  event  )

Definition at line 726 of file seqgraphic_widget.cpp. References m_SeqGraphicPane, and CGlWidgetBase::x_RedrawControls().

void CSeqGraphicWidget::OnResetSeqStart (  wxCommandEvent &  event  )

Definition at line 767 of file seqgraphic_widget.cpp. References m_SeqGraphicPane.

void CSeqGraphicWidget::OnSeqGoto (  CSequenceGotoEvent &  event  )

Definition at line 619 of file seqgraphic_widget.cpp. References GetDataSource(), CSequenceGotoData::GetRange(), CSGSequenceDS::GetSequenceLength(), len, m_SeqGraphicPane, m_SequenceGotoData, and ZoomOnRange().

void CSeqGraphicWidget::OnSeqGotoClose (  CSequenceGotoEvent &  event  )

Definition at line 632 of file seqgraphic_widget.cpp. References m_SequenceGotoDlg.

void CSeqGraphicWidget::OnSeqGotoCmd (  wxCommandEvent &  event  )

Definition at line 604 of file seqgraphic_widget.cpp. References m_SequenceGotoData, and m_SequenceGotoDlg.

void CSeqGraphicWidget::OnSetMarker (  wxCommandEvent &  event  )

Definition at line 712 of file seqgraphic_widget.cpp. References CGlWidgetBase::m_PopupPoint, m_SeqGraphicPane, and CGlWidgetBase::x_RedrawControls().

void CSeqGraphicWidget::OnSetSeqMarkerDlg (  wxCommandEvent &  event  )

Definition at line 702 of file seqgraphic_widget.cpp. References m_SeqGraphicPane, and CGlWidgetBase::x_RedrawControls().

void CSeqGraphicWidget::OnSetSeqStart (  wxCommandEvent &  event  )

Definition at line 761 of file seqgraphic_widget.cpp. References CGlWidgetBase::m_PopupPoint, and m_SeqGraphicPane.

void CSeqGraphicWidget::OnSetSeqStartMarker (  wxCommandEvent &  event  )

Definition at line 754 of file seqgraphic_widget.cpp. References m_SeqGraphicPane.

void CSeqGraphicWidget::OnSetSwitchPoint (  wxCommandEvent &  event  )

wuliangs Definition at line 746 of file seqgraphic_widget.cpp. References m_SeqGraphicPane, and CGlWidgetBase::x_RedrawControls().

void CSeqGraphicWidget::OnShowAllTracks (  wxCommandEvent &  event  )

Definition at line 827 of file seqgraphic_widget.cpp. References m_SeqGraphicPane.

void CSeqGraphicWidget::OnSize (  wxSizeEvent &  event  )

Reimplemented from CGlWidgetBase. Definition at line 967 of file seqgraphic_widget.cpp. References m_SeqGraphicPane, and CGlWidgetBase::OnSize().

void CSeqGraphicWidget::OnUpdateFlipStrands (  wxUpdateUIEvent &  event  )

Definition at line 571 of file seqgraphic_widget.cpp. References IsFlipped().

void CSeqGraphicWidget::OnUpdateGoBack (  wxUpdateUIEvent &  event  )

Definition at line 591 of file seqgraphic_widget.cpp. References m_SeqGraphicPane.

void CSeqGraphicWidget::OnUpdateGoForward (  wxUpdateUIEvent &  event  )

Definition at line 597 of file seqgraphic_widget.cpp. References m_SeqGraphicPane.

void CSeqGraphicWidget::OnUpdateSetSwitchPoint (  wxUpdateUIEvent &  event  )

Definition at line 462 of file seqgraphic_widget.cpp. References m_SeqGraphicPane.

void CSeqGraphicWidget::OnUpdateVertical (  wxUpdateUIEvent &  event  )

Definition at line 565 of file seqgraphic_widget.cpp. References IsHorizontal().

void CSeqGraphicWidget::OnUpdateZoomObject (  wxUpdateUIEvent &  event  )

Definition at line 583 of file seqgraphic_widget.cpp. References GetObjectSelection().

void CSeqGraphicWidget::OnUpdateZoomSelection (  wxUpdateUIEvent &  event  )

Definition at line 577 of file seqgraphic_widget.cpp. References m_SeqGraphicPane.

void CSeqGraphicWidget::OnVertical (  wxCommandEvent &  event  )

Definition at line 651 of file seqgraphic_widget.cpp. References IsFlipped(), IsHorizontal(), and SetHorizontal().

void CSeqGraphicWidget::OnZoomObject (  wxCommandEvent &  event  )

Definition at line 794 of file seqgraphic_widget.cpp. References m_SeqGraphicPane.

void CSeqGraphicWidget::OnZoomSelection (  wxCommandEvent &  event  )

Definition at line 784 of file seqgraphic_widget.cpp. References CRangeCollection< Position >::GetFrom(), CRangeCollection< Position >::GetTo(), m_SeqGraphicPane, and ZoomOnRange().

void CSeqGraphicWidget::OnZoomSequence (  wxCommandEvent &  event  )

Definition at line 774 of file seqgraphic_widget.cpp. References CGlRect< T >::CenterPoint(), CGlPane::GetMinScaleX(), CGlPane::GetMinScaleY(), CGlPane::GetVisibleRect(), IsHorizontal(), m_Port, CGlPane::SetScale(), x_SaveStates(), and CGlWidgetBase::x_UpdateOnZoom().

void CSeqGraphicWidget::Print (  const CPrintOptions &  opts  )

print hook Definition at line 1219 of file seqgraphic_widget.cpp.

void CSeqGraphicWidget::RegisterCommands (  CUICommandRegistry &  cmd_reg, wxFileArtProvider &  provider )  [static]

Definition at line 72 of file seqgraphic_widget.cpp. References eCmdAddTrack, eCmdAdjustRuler, eCmdAnnotConfig, eCmdChangeViewMode, eCmdCloneTrack, eCmdCollapseAllSubtracks, eCmdCollapseAllTracks, eCmdConfigChanged, eCmdCreateFeature, eCmdExpandAllSubtracks, eCmdExpandAllTracks, eCmdFlipStrand, eCmdHairlineOptions, eCmdHideAllTracks, eCmdMoveTrackToBottom, eCmdMoveTrackToTop, eCmdNextSplice, eCmdPrevSplice, eCmdRemoveTrack, eCmdResetMarker, eCmdResetSeqMarker, eCmdResetSeqStart, eCmdSequenceLabel, eCmdSetMarker, eCmdSetMarkerDlg, eCmdSetSeqStart, eCmdSetSeqStartMarker, eCmdSetSwitchPoint, eCmdShowAllTracks, eCmdStrandFlipped, eCmdZoomObject, CUICommandRegistry::RegisterCommand(), and WidgetsData_RegisterCommands(). Referenced by CSeqGraphicDemoDlg::Init(), and CViewGraphicFactory::RegisterCommands().

void CSeqGraphicWidget::ResetObjectSelection (   )

Definition at line 1282 of file seqgraphic_widget.cpp. References m_SeqGraphicPane.

void CSeqGraphicWidget::ResetRangeSelection (   )

Definition at line 1276 of file seqgraphic_widget.cpp. References m_SeqGraphicPane. Referenced by CViewGraphic::x_OnSetSelection().

void CSeqGraphicWidget::ResetSelection (   )

Definition at line 1270 of file seqgraphic_widget.cpp. References m_SeqGraphicPane.

void CSeqGraphicWidget::ResetVisibleRangeChanged (   )

Definition at line 1200 of file seqgraphic_widget.cpp.

void CSeqGraphicWidget::SelectObject (  const CObject *  obj  )

set/clear selections Definition at line 1258 of file seqgraphic_widget.cpp. References m_SeqGraphicPane.

void CSeqGraphicWidget::SelectSeqLoc (  const objects::CSeq_loc *  loc  )

void CSeqGraphicWidget::SetExternalGlyphs (  const CSeqGlyph::TObjects &  objs  )

Definition at line 1157 of file seqgraphic_widget.cpp. References m_SeqGraphicPane.

void CSeqGraphicWidget::SetHorizontal (  bool  b_horz, bool  b_flip )

Definition at line 1226 of file seqgraphic_widget.cpp. References m_SeqGraphicPane. Referenced by CSeqGraphicDemoDlg::OnFlipStrand(), OnFlipStrands(), and OnVertical().

void CSeqGraphicWidget::SetInputObject (  SConstScopedObject &  obj  )

access the data source Definition at line 1206 of file seqgraphic_widget.cpp. References m_SeqGraphicPane, and x_Update(). Referenced by CViewGraphic::InitView(), and CSeqGraphicDemoDlg::OnAccClick().

void CSeqGraphicWidget::SetRangeSelection (  const TRangeColl &  ranges  )

Definition at line 1302 of file seqgraphic_widget.cpp. References m_SeqGraphicPane. Referenced by CViewGraphic::x_OnSetSelection().

void CSeqGraphicWidget::SetScaleX (  TModelUnit  scale, const TModelPoint &  point )

Definition at line 999 of file seqgraphic_widget.cpp. References CGlPane::GetScaleY(), m_Port, CGlPane::SetScaleRefPoint(), and CGlWidgetBase::x_UpdateOnZoom(). Referenced by CSeqGraphicPane::MZHH_SetScale().

void CSeqGraphicWidget::UpdateConfig (   )

The config object has changed. Do what is necessary. Definition at line 1326 of file seqgraphic_widget.cpp. References m_SeqGraphicPane. Referenced by CViewGraphic::InitView(), and CSeqGraphicDemoDlg::OnAccClick().

void CSeqGraphicWidget::UpdateHeight (  TModelUnit  height  )

Definition at line 976 of file seqgraphic_widget.cpp. References CGlPane::GetModelLimitsRect(), CGlPane::GetViewport(), CGlPane::GetVisibleRect(), CGlRect< T >::Height(), m_Port, CGlRect< T >::SetBottom(), CGlPane::SetModelLimitsRect(), CGlPane::SetVisibleRect(), CGlRect< T >::Top(), and CGlWidgetBase::x_UpdateScrollbars(). Referenced by CSeqGraphicPane::x_Render().

bool CSeqGraphicWidget::VisibleRangeChanged (   )  const

indicates visible sequence range has changes Definition at line 1194 of file seqgraphic_widget.cpp.

static static static static static void CSeqGraphicWidget::x_CreatePane (   )  [protected, virtual]

factory method creating master pane, called form x_CreateControls() Implements CGlWidgetBase. Definition at line 332 of file seqgraphic_widget.cpp.

wxMenu * CSeqGraphicWidget::x_CreatePopupMenu (  int  area  )  [private]

forbidden Definition at line 1006 of file seqgraphic_widget.cpp. References CUICommandRegistry::AppendMenuItem(), CUICommandRegistry::CreateMenu(), eCmdAddTrack, eCmdCloneTrack, eCmdCollapseAllSubtracks, eCmdExpandAllSubtracks, eCmdMoveTrackToBottom, eCmdMoveTrackToTop, eCmdRemoveTrack, CSeqGraphicPane::fArea_Ruler, CTrackTypeInfo::GetId(), CLayoutTrack::GetId(), CTempTrackProxy::GetId(), CUICommandRegistry::GetInstance(), CLayoutTrack::GetParentTrack(), CTrackContainer::GetSubtrackProxies(), CTrackContainerFactory::GetTypeInfo(), ITERATE, and m_SeqGraphicPane. Referenced by OnContextMenu().

CLayoutTrack * CSeqGraphicWidget::x_GetCurrentHitTrack (   )  [private]

Definition at line 1336 of file seqgraphic_widget.cpp. References m_SeqGraphicPane. Referenced by OnAddTrack(), OnCloneTrack(), OnCollapseAllSubtracks(), OnExpandAllSubtracks(), OnMoveTrackToBottom(), OnMoveTrackToTop(), and OnRemoveTrack().

CGlWidgetPane * CSeqGraphicWidget::x_GetPane (   )  [protected, virtual]

Reimplemented from CGlWidgetBase. Definition at line 338 of file seqgraphic_widget.cpp. References auto_ptr< X >::get(), and m_SeqGraphicPane.

void CSeqGraphicWidget::x_SaveDefaultScoringMethod (  string  name  )  [private]

void CSeqGraphicWidget::x_SaveStates (   )  [protected, virtual]

Reimplemented from CGlWidgetBase. Definition at line 360 of file seqgraphic_widget.cpp. References auto_ptr< X >::get(), and m_SeqGraphicPane. Referenced by OnZoomSequence().

void CSeqGraphicWidget::x_SetPortLimits (   )  [protected, virtual]

updates model limits of the Master CGlPane Implements CGlWidgetBase. Definition at line 344 of file seqgraphic_widget.cpp. References GetDataSource(), CSGSequenceDS::GetSequenceLength(), CGlPane::GetViewport(), CGlRect< T >::Height(), m_Port, CGlRect< T >::SetHorz(), CGlPane::SetModelLimitsRect(), CGlRect< T >::SetVert(), and CGlPane::SetVisibleRect(). Referenced by x_Update().

void CSeqGraphicWidget::x_Update (   )  [protected, virtual]

Update handlers. Update data strutures update m_Port (x_SetPortLimits) update visible rect in m_Port x_UpdateScrollbars() if necessary x_UpdatePanes() ? x_RedrawControls() Reimplemented from CGlWidgetBase. Definition at line 374 of file seqgraphic_widget.cpp. References CGlWidgetBase::x_RedrawControls(), x_SetPortLimits(), and CGlWidgetBase::x_UpdateScrollbars(). Referenced by SetInputObject().

void CSeqGraphicWidget::x_UpdatePane (   )  [protected, virtual]

Definition at line 369 of file seqgraphic_widget.cpp. References m_SeqGraphicPane.

void CSeqGraphicWidget::ZoomOnRange (  TSeqRange  range, bool  margins = true )

Definition at line 1177 of file seqgraphic_widget.cpp. References GetDataSource(), COpenRange< Position >::GetFrom(), COpenRange< Position >::GetLength(), CGlPane::GetModelLimitsRect(), CSGSequenceDS::GetSequenceLength(), COpenRange< Position >::GetTo(), len, m_Port, COpenRange< Position >::SetFrom(), CGlRect< T >::SetHorz(), COpenRange< Position >::SetTo(), CGlWidgetBase::x_UpdateOnZoom(), and CGlPane::ZoomRect(). Referenced by CSeqGraphicPane::GoBack(), CSeqGraphicPane::GoForward(), CViewGraphic::InitView(), CSeqGraphicPane::LTH_ZoomOnRange(), CSeqGraphicPane::NextPrevSplice(), CSeqGraphicPane::OnLeftDblClick(), OnSeqGoto(), CViewGraphic::OnVisibleRangeChanged(), OnZoomSelection(), and CSeqGraphicPane::ZoomObject().

---

Member Data Documentation

TCmdToName CSeqGraphicWidget::m_CmdToName [private]

Definition at line 330 of file seqgraphic_widget.hpp.

CGlPane CSeqGraphicWidget::m_Port [protected]

Definition at line 315 of file seqgraphic_widget.hpp. Referenced by CSeqGraphicWidget(), GetPort(), GetVisibleRange(), GetVisibleSeqRange(), OnZoomSequence(), SetScaleX(), UpdateHeight(), x_SetPortLimits(), and ZoomOnRange().

auto_ptr<CSeqGraphicPane> CSeqGraphicWidget::m_SeqGraphicPane [private]

Definition at line 325 of file seqgraphic_widget.hpp. Referenced by GetConfig(), GetDataSource(), GetObjectSelection(), GetRangeOrObjectSelection(), GetRangeSelection(), IsFlipped(), IsHorizontal(), OnAddTrack(), OnCollapseAllTracks(), OnContextMenu(), OnDataChanged(), OnExpandAllTracks(), OnGoBack(), OnGoForward(), OnHideAllTracks(), OnNextSplice(), OnPrevSplice(), OnResetMarker(), OnResetSeqMarker(), OnResetSeqStart(), OnSeqGoto(), OnSetMarker(), OnSetSeqMarkerDlg(), OnSetSeqStart(), OnSetSeqStartMarker(), OnSetSwitchPoint(), OnShowAllTracks(), OnSize(), OnUpdateGoBack(), OnUpdateGoForward(), OnUpdateSetSwitchPoint(), OnUpdateZoomSelection(), OnZoomObject(), OnZoomSelection(), ResetObjectSelection(), ResetRangeSelection(), ResetSelection(), SelectObject(), SetExternalGlyphs(), SetHorizontal(), SetInputObject(), SetRangeSelection(), UpdateConfig(), x_CreatePopupMenu(), x_GetCurrentHitTrack(), x_GetPane(), x_SaveStates(), and x_UpdatePane().

CSequenceGotoData CSeqGraphicWidget::m_SequenceGotoData [private]

Definition at line 341 of file seqgraphic_widget.hpp. Referenced by OnSeqGoto(), and OnSeqGotoCmd().

CSequenceGotoDlg* CSeqGraphicWidget::m_SequenceGotoDlg [private]

Definition at line 342 of file seqgraphic_widget.hpp. Referenced by OnSeqGotoClose(), OnSeqGotoCmd(), and ~CSeqGraphicWidget().

---

The documentation for this class was generated from the following files:

• include/gui/widgets/seq_graphic/seqgraphic_widget.hpp
• src/gui/widgets/seq_graphic/seqgraphic_widget.cpp

---