CCrossAlnWidget Class Reference

Search Toolkit Book for CCrossAlnWidget

#include <cross_aln_widget.hpp>

Inheritance diagram for CCrossAlnWidget:

[legend]Collaboration diagram for CCrossAlnWidget:

[legend]List of all members.

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Detailed Description

Definition at line 84 of file cross_aln_widget.hpp.

Public Types
typedef CRangeCollection< TSeqPos >	TRangeColl
Public Member Functions
	CCrossAlnWidget (wxWindow *parent, wxWindowID id=wxID_ANY, const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxDefaultSize, long style=wxTAB_TRAVERSAL)
virtual	~CCrossAlnWidget ()
virtual CGlPane &	GetPort ()
	implement these 2 functions in derived classes
virtual const CGlPane &	GetPort () const
void	SetDataSource (ICrossAlnDataSource *ds)
void	OnChooseSeq (wxCommandEvent &event)
void	OnColorByScore (wxCommandEvent &event)
void	OnColorBySegments (wxCommandEvent &event)
void	Update ()
void	OnSize (wxSizeEvent &event)
void	OnScrollQ (wxScrollEvent &event)
void	OnScrollS (wxScrollEvent &event)
void	OnContextMenu (wxContextMenuEvent &event)
void	OnZoomAll (wxCommandEvent &event)
void	OnZoomIn (wxCommandEvent &event)
void	OnZoomOut (wxCommandEvent &event)
void	OnZoomToSeq (wxCommandEvent &event)
void	OnZoomAll_Q (wxCommandEvent &event)
void	OnZoomIn_Q (wxCommandEvent &event)
void	OnZoomOut_Q (wxCommandEvent &event)
void	OnZoomToSeq_Q (wxCommandEvent &event)
void	OnZoomAll_S (wxCommandEvent &event)
void	OnZoomIn_S (wxCommandEvent &event)
void	OnZoomOut_S (wxCommandEvent &event)
void	OnZoomToSeq_S (wxCommandEvent &event)
void	OnZoomSelection (wxCommandEvent &event)
void	OnUpdateZoomSelection (wxUpdateUIEvent &event)
void	UpdateScrollbars ()
Visible Range API
TSeqRange	GetSubjectVisibleRange () const
void	SetSubjectVisibleRange (const TSeqRange &range)
TSeqRange	GetQueryVisibleRange () const
void	SetQueryVisibleRange (const TSeqRange &range)
Selection API
const TRangeColl &	GetSubjectRangeSelection () const
const TRangeColl &	GetQueryRangeSelection () const
void	SetSubjectRangeSelection (const TRangeColl &coll)
void	SetQueryRangeSelection (const TRangeColl &coll)
void	ResetObjectSelection ()
void	GetObjectSelection (TConstObjects &objs) const
void	SetObjectSelection (const vector< const objects::CSeq_align * > sel_aligns)
Static Public Member Functions
static void	RegisterCommands (CUICommandRegistry &cmd_reg, wxFileArtProvider &provider)
Protected Member Functions
virtual void	x_CreateControls ()
	creates Pane, Scrollbars and other child widgets, called from Create()
virtual void	x_CreatePane ()
	factory method creating master pane, called form x_CreateControls()
virtual CGlWidgetPane *	x_GetPane ()
virtual void	x_Update ()
	Update handlers.
virtual void	x_UpdatePane ()
virtual void	x_SetPortLimits ()
	updates model limits of the Master CGlPane
Protected Attributes
auto_ptr< CCrossAlnPane >	m_CrossPane
CGlPane	m_Port

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Member Typedef Documentation

typedef CRangeCollection<TSeqPos> CCrossAlnWidget::TRangeColl

Definition at line 90 of file cross_aln_widget.hpp.

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Constructor & Destructor Documentation

static CCrossAlnWidget::CCrossAlnWidget (  wxWindow *  parent, wxWindowID  id = wxID_ANY, const wxPoint &  pos = wxDefaultPosition, const wxSize &  size = wxDefaultSize, long  style = wxTAB_TRAVERSAL )

Definition at line 126 of file cross_aln_widget.cpp.

CCrossAlnWidget::~CCrossAlnWidget (   )  [virtual]

Definition at line 134 of file cross_aln_widget.cpp.

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Member Function Documentation

void CCrossAlnWidget::GetObjectSelection (  TConstObjects &  objs  )  const

Definition at line 559 of file cross_aln_widget.cpp. References m_CrossPane. Referenced by CCrossAlignView::GetSelection().

const CGlPane & CCrossAlnWidget::GetPort (   )  const [virtual]

Implements CGlWidgetBase. Definition at line 191 of file cross_aln_widget.cpp. References m_Port.

CGlPane & CCrossAlnWidget::GetPort (   )  [virtual]

implement these 2 functions in derived classes Implements CGlWidgetBase. Definition at line 185 of file cross_aln_widget.cpp. References m_Port. Referenced by CCrossAlignView::GetVisibleRanges(), and CCrossAlignView::OnVisibleRangeChanged().

const CCrossAlnWidget::TRangeColl & CCrossAlnWidget::GetQueryRangeSelection (   )  const

Definition at line 535 of file cross_aln_widget.cpp. References m_CrossPane. Referenced by CCrossAlignView::GetSelection().

TSeqRange CCrossAlnWidget::GetQueryVisibleRange (   )  const

Definition at line 511 of file cross_aln_widget.cpp. References CGlPane::GetVisibleRect(), CGlRect< T >::Left(), m_CrossPane, CGlRect< T >::Right(), COpenRange< Position >::SetFrom(), and COpenRange< Position >::SetTo().

const CCrossAlnWidget::TRangeColl & CCrossAlnWidget::GetSubjectRangeSelection (   )  const

Definition at line 528 of file cross_aln_widget.cpp. References m_CrossPane. Referenced by CCrossAlignView::GetSelection().

TSeqRange CCrossAlnWidget::GetSubjectVisibleRange (   )  const

Definition at line 495 of file cross_aln_widget.cpp. References CGlPane::GetVisibleRect(), CGlRect< T >::Left(), m_CrossPane, CGlRect< T >::Right(), COpenRange< Position >::SetFrom(), and COpenRange< Position >::SetTo().

void CCrossAlnWidget::OnChooseSeq (  wxCommandEvent &  event  )

Definition at line 240 of file cross_aln_widget.cpp. References _T, IHitSeqId::Equals(), CwxChooseSeqDlg::GetParams(), CwxChooseSeqDlg::GetQueryId(), CwxChooseSeqDlg::GetSubjectId(), m_CrossPane, CwxChooseSeqDlg::SetSeqs(), and Update().

void CCrossAlnWidget::OnColorByScore (  wxCommandEvent &  event  )

Definition at line 284 of file cross_aln_widget.cpp.

void CCrossAlnWidget::OnColorBySegments (  wxCommandEvent &  event  )

Definition at line 278 of file cross_aln_widget.cpp. References m_CrossPane.

void CCrossAlnWidget::OnContextMenu (  wxContextMenuEvent &  event  )

Definition at line 580 of file cross_aln_widget.cpp. References CUICommandRegistry::CreateMenu(), and CUICommandRegistry::GetInstance().

void CCrossAlnWidget::OnScrollQ (  wxScrollEvent &  event  )

Definition at line 447 of file cross_aln_widget.cpp. References m_CrossPane, and UpdateScrollbars().

void CCrossAlnWidget::OnScrollS (  wxScrollEvent &  event  )

Definition at line 457 of file cross_aln_widget.cpp. References m_CrossPane, and UpdateScrollbars().

void CCrossAlnWidget::OnSize (  wxSizeEvent &  event  )

Reimplemented from CGlWidgetBase. Definition at line 381 of file cross_aln_widget.cpp. References m_CrossPane, CGlWidgetBase::OnSize(), and x_GetPane().

void CCrossAlnWidget::OnUpdateZoomSelection (  wxUpdateUIEvent &  event  )

Definition at line 216 of file cross_aln_widget.cpp. References m_CrossPane, and CRangeCollection< Position >::size().

void CCrossAlnWidget::OnZoomAll (  wxCommandEvent &  event  )

Reimplemented from CGlWidgetBase. Definition at line 323 of file cross_aln_widget.cpp. References m_CrossPane.

void CCrossAlnWidget::OnZoomAll_Q (  wxCommandEvent &  event  )

Definition at line 342 of file cross_aln_widget.cpp. References m_CrossPane.

void CCrossAlnWidget::OnZoomAll_S (  wxCommandEvent &  event  )

Definition at line 361 of file cross_aln_widget.cpp. References m_CrossPane.

void CCrossAlnWidget::OnZoomIn (  wxCommandEvent &  event  )

Reimplemented from CGlWidgetBase. Definition at line 329 of file cross_aln_widget.cpp. References m_CrossPane.

void CCrossAlnWidget::OnZoomIn_Q (  wxCommandEvent &  event  )

Definition at line 348 of file cross_aln_widget.cpp. References m_CrossPane.

void CCrossAlnWidget::OnZoomIn_S (  wxCommandEvent &  event  )

Definition at line 367 of file cross_aln_widget.cpp. References m_CrossPane.

void CCrossAlnWidget::OnZoomOut (  wxCommandEvent &  event  )

Reimplemented from CGlWidgetBase. Definition at line 335 of file cross_aln_widget.cpp. References m_CrossPane.

void CCrossAlnWidget::OnZoomOut_Q (  wxCommandEvent &  event  )

Definition at line 354 of file cross_aln_widget.cpp. References m_CrossPane.

void CCrossAlnWidget::OnZoomOut_S (  wxCommandEvent &  event  )

Definition at line 373 of file cross_aln_widget.cpp. References m_CrossPane.

void CCrossAlnWidget::OnZoomSelection (  wxCommandEvent &  event  )

Definition at line 226 of file cross_aln_widget.cpp. References CRangeCollection< Position >::GetFrom(), CRangeCollection< Position >::GetToOpen(), m_CrossPane, and CRangeCollection< Position >::size().

void CCrossAlnWidget::OnZoomToSeq (  wxCommandEvent &  event  )

Definition at line 468 of file cross_aln_widget.cpp. References m_CrossPane.

void CCrossAlnWidget::OnZoomToSeq_Q (  wxCommandEvent &  event  )

Definition at line 475 of file cross_aln_widget.cpp. References m_CrossPane.

void CCrossAlnWidget::OnZoomToSeq_S (  wxCommandEvent &  event  )

Definition at line 481 of file cross_aln_widget.cpp. References m_CrossPane.

void CCrossAlnWidget::RegisterCommands (  CUICommandRegistry &  cmd_reg, wxFileArtProvider &  provider )  [static]

Definition at line 50 of file cross_aln_widget.cpp. References eCmdChooseSeq, eCmdZoomAllQuery, eCmdZoomAllSubject, eCmdZoomInQuery, eCmdZoomInSubject, eCmdZoomOutQuery, eCmdZoomOutSubject, eCmdZoomSeqQuery, eCmdZoomSeqSubject, and CUICommandRegistry::RegisterCommand(). Referenced by CCrossAlnDemoDlg::Init(), and CCrossAlignViewFactory::RegisterCommands().

void CCrossAlnWidget::ResetObjectSelection (   )

Definition at line 553 of file cross_aln_widget.cpp. References m_CrossPane.

void CCrossAlnWidget::SetDataSource (  ICrossAlnDataSource *  ds  )

Definition at line 487 of file cross_aln_widget.cpp. References m_CrossPane, and x_Update(). Referenced by CCrossAlnDemoDlg::OnAccClick(), CCrossAlnDemoDlg::OnFileClick(), and CCrossAlignView::x_PostAttachToProject().

void CCrossAlnWidget::SetObjectSelection (  const vector< const objects::CSeq_align * >  sel_aligns  )

void CCrossAlnWidget::SetQueryRangeSelection (  const TRangeColl &  coll  )

Definition at line 547 of file cross_aln_widget.cpp. References m_CrossPane.

void CCrossAlnWidget::SetQueryVisibleRange (  const TSeqRange &  range  )

Definition at line 521 of file cross_aln_widget.cpp. References COpenRange< Position >::GetFrom(), COpenRange< Position >::GetTo(), and m_CrossPane. Referenced by CCrossAlignView::OnVisibleRangeChanged().

void CCrossAlnWidget::SetSubjectRangeSelection (  const TRangeColl &  coll  )

Definition at line 541 of file cross_aln_widget.cpp. References m_CrossPane. Referenced by CCrossAlignView::x_OnSetSelection().

void CCrossAlnWidget::SetSubjectVisibleRange (  const TSeqRange &  range  )

Definition at line 505 of file cross_aln_widget.cpp. References COpenRange< Position >::GetFrom(), COpenRange< Position >::GetTo(), and m_CrossPane. Referenced by CCrossAlignView::OnVisibleRangeChanged().

void CCrossAlnWidget::Update (   )

Definition at line 571 of file cross_aln_widget.cpp. References m_CrossPane, and UpdateScrollbars(). Referenced by OnChooseSeq().

void CCrossAlnWidget::UpdateScrollbars (   )

Definition at line 411 of file cross_aln_widget.cpp. References ID_SCROLLBAR_Q, ID_SCROLLBAR_S, CGlRect< T >::Left(), m_CrossPane, CGlRect< T >::Right(), and CGlRect< T >::Width(). Referenced by OnScrollQ(), OnScrollS(), Update(), x_Update(), and CCrossAlnPane::x_UpdateOnZoom().

void CCrossAlnWidget::x_CreateControls (   )  [protected, virtual]

creates Pane, Scrollbars and other child widgets, called from Create() Reimplemented from CGlWidgetBase. Definition at line 139 of file cross_aln_widget.cpp. References _ASSERT, ID_SCROLLBAR_Q, ID_SCROLLBAR_S, x_CreatePane(), and x_GetPane().

void CCrossAlnWidget::x_CreatePane (   )  [protected, virtual]

factory method creating master pane, called form x_CreateControls() Implements CGlWidgetBase. Definition at line 168 of file cross_aln_widget.cpp. References m_CrossPane, and auto_ptr< X >::reset(). Referenced by x_CreateControls().

CGlWidgetPane * CCrossAlnWidget::x_GetPane (   )  [protected, virtual]

Reimplemented from CGlWidgetBase. Definition at line 174 of file cross_aln_widget.cpp. References auto_ptr< X >::get(), and m_CrossPane. Referenced by OnSize(), and x_CreateControls().

void CCrossAlnWidget::x_SetPortLimits (   )  [protected, virtual]

updates model limits of the Master CGlPane Implements CGlWidgetBase. Definition at line 180 of file cross_aln_widget.cpp.

void CCrossAlnWidget::x_Update (   )  [protected, virtual]

Update handlers. Update data strutures update m_Port (x_SetPortLimits) update visible rect in m_Port x_UpdateScrollbars() if necessary x_UpdatePanes() ? x_RedrawControls() Reimplemented from CGlWidgetBase. Definition at line 197 of file cross_aln_widget.cpp. References m_CrossPane, UpdateScrollbars(), and CGlWidgetBase::x_RedrawControls(). Referenced by SetDataSource().

void CCrossAlnWidget::x_UpdatePane (   )  [protected, virtual]

Definition at line 208 of file cross_aln_widget.cpp.

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Member Data Documentation

auto_ptr<CCrossAlnPane> CCrossAlnWidget::m_CrossPane [protected]

Definition at line 178 of file cross_aln_widget.hpp. Referenced by GetObjectSelection(), GetQueryRangeSelection(), GetQueryVisibleRange(), GetSubjectRangeSelection(), GetSubjectVisibleRange(), OnChooseSeq(), OnColorBySegments(), OnScrollQ(), OnScrollS(), OnSize(), OnUpdateZoomSelection(), OnZoomAll(), OnZoomAll_Q(), OnZoomAll_S(), OnZoomIn(), OnZoomIn_Q(), OnZoomIn_S(), OnZoomOut(), OnZoomOut_Q(), OnZoomOut_S(), OnZoomSelection(), OnZoomToSeq(), OnZoomToSeq_Q(), OnZoomToSeq_S(), ResetObjectSelection(), SetDataSource(), SetQueryRangeSelection(), SetQueryVisibleRange(), SetSubjectRangeSelection(), SetSubjectVisibleRange(), Update(), UpdateScrollbars(), x_CreatePane(), x_GetPane(), and x_Update().

CGlPane CCrossAlnWidget::m_Port [protected]

Definition at line 179 of file cross_aln_widget.hpp. Referenced by GetPort().

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The documentation for this class was generated from the following files:

• include/gui/widgets/aln_crossaln/cross_aln_widget.hpp
• src/gui/widgets/aln_crossaln/cross_aln_widget.cpp

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