CAlnVecRow Class Reference

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#include <align_row.hpp>

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List of all members.

Detailed Description

class CAlnVecRow - implementation of IAlignRow for CAlnVec-based alignments.

CAlnVecRow uses CAlnVecRowHandle as proxy for accesing data in CAlnVec.

Definition at line 73 of file align_row.hpp.

Public Types

typedef IAlnExplorer::TSignedRange TSignedRange

Public Member Functions

 CAlnVecRow (const IAlignRowHandle &handle)
 CAlnVecRow.
 CAlnVecRow (const IAlignRowHandle &handle, vector< IAlnVecRowGraph * > &graphs)
 ~CAlnVecRow ()
virtual void SetScoreCache (CScoreCache *cache)
virtual bool IsExpandable () const
virtual bool IsExpanded () const
virtual void Expand (bool b_exp)
virtual const IAlnRowGraphProperties * GetProperties () const
virtual void SetProperties (IAlnRowGraphProperties *props)
virtual TSeqPos GetColumnAsSeqPos (TColumnType type, const TModelRect &rc_vis)
virtual string GetColumnAsString (TColumnType type)
IAlignRow implementation
virtual void SetHost (IAlignRowHost *host)
virtual void SetDisplayStyle (const CRowDisplayStyle *style)
virtual const CRowDisplayStyle * GetDisplayStyle ()
virtual int GetRowNum () const
 Returns index of row in IAlnMultiDataSource.
virtual int GetHeightPixels () const
 Returns height of the row in pixels.
virtual void RenderColumn (TColumnType col_type, CGlPane &pane, int state)
virtual void OnMouseEvent (wxMouseEvent &event, TColumnType col_type, CGlPane &pane)
virtual string GetTooltip (const TVPPoint &vp_pt, TColumnType col_type, CGlPane &pane)
 returns tooltip text by point in the viewport coordinates
virtual void GraphicsCacheCmd (EGraphCacheCmd cmd)
virtual void GetHTMLActiveAreas (TColumnType col_type, CGlPane &pane, TAreaVector &areas)
virtual void UpdateOnStyleChanged ()
virtual void UpdateOnAnchorChanged ()

Protected Types

typedef CScoreCache::TScoreColl::const_iterator TScoreConstIterator
enum  EButtons { eInvalid = -1, eStrandMarker, eExpand, eSetupGraphs }

Protected Member Functions

 DECLARE_EVENT_MAP ()
virtual int x_GetBaseHeight () const
virtual void x_RenderDescr (CGlPane &pane, int state)
virtual void x_RenderAlign (CGlPane &pane)
 Renders graphical part of the row.
virtual void x_RenderIcons (CGlPane &pane, int state)
virtual void x_RenderIconStrand (CGlPane &pane, int state)
virtual void x_RenderIconExpand (CGlPane &pane, int state)
virtual void x_RenderEmptyBox (CGlPane &pane)
virtual void x_RenderInserts (CGlPane &pane, int from, int to, TModelUnit top_y, TModelUnit bottom_y)
virtual void x_RenderUnaligned (CGlPane &pane, int from, int to, TModelUnit top_y, TModelUnit bottom_y)
virtual void x_RenderAlignSegments (CGlPane &pane, IAlnSegmentIterator &it_seg, TModelUnit top_y, TModelUnit bottom_y, const CRgbaColor &color)
virtual void x_RenderAlignScores (CGlPane &pane, IAlnSegmentIterator &it_seg, int top_y, int bottom_y, bool averageable)
virtual void x_RenderAveragableScores (CGlPane &pane, IAlnSegmentIterator &it_seg, TScoreConstIterator it, const TScoreConstIterator it_end, int vp_top_y, int vp_bottom_y)
virtual void x_RenderNonAveragableScores (CGlPane &pane, IAlnSegmentIterator &it_seg, TScoreConstIterator it, const TScoreConstIterator it_end, int vp_top_y, int vp_bottom_y)
virtual bool x_CanRenderSeq (CGlPane &pane)
 Checks if sequence can be drawn.
virtual void x_RenderSequence (CGlPane &pane, TModelUnit top_y, TModelUnit bottom_y, int start, int stop)
virtual void x_RenderGraph (CGlPane &pane, const TSignedRange &range)
virtual void x_RenderStartPos (CGlPane &pane, int state)
virtual void x_RenderEndPos (CGlPane &pane, int state)
virtual void x_RenderSeqStart (CGlPane &pane, int state)
virtual void x_RenderSeqEnd (CGlPane &pane, int state)
virtual void x_RenderSeqLength (CGlPane &pane, int state)
virtual void x_RenderAlnPos (CGlPane &pane, TSeqPos aln_pos, IAlnExplorer::ESearchDirection dir, int state)
virtual void x_RenderTextCell (CGlPane &pane, const string &text, int state, IGlFont::TAlign align)
virtual TVPRect x_GetButtonRect (CGlPane &pane, EButtons btn, int shift=1)
virtual EButtons x_HitTestButton (CGlPane &pane, const TVPPoint &pt)
virtual void x_OnClickExpandBtn ()
virtual string x_GetDescrTooltip (const TVPPoint &pt, CGlPane &pane)
virtual string x_GetIconsTooltip (const TVPPoint &pt, CGlPane &pane)
virtual string x_GetAlignmentTooltip (const TVPPoint &pt, CGlPane &pane)
string x_GetAlignmentTooltip_General (const TSeqPos pos)
string x_GetAlignmentTooltip_Insert (const TSignedSeqRange &aln_r, const TSignedSeqRange &seq_r)
string x_GetAlignmentTooltip_Gap (const TSignedSeqRange &aln_r, const TSignedSeqRange &seq_r)
string x_GetAlignmentTooltip_Unaligned (TSignedSeqPos aln_prev_to, TSignedSeqPos aln_from, TSignedSeqPos prev_to, TSignedSeqPos from)
string x_GetTooltipSequence (TSeqPos from, TSeqPos to)
IAlignRowHost * x_GetHost ()
void x_OnGraphContentChanged (CEvent *evt)
void x_OnGraphSizeChanged (CEvent *evt)
virtual void x_UpdateRowHeight ()

Protected Attributes

const IAlignRowHandle & m_Handle
IAlignRowHost * m_Host
int m_Height
int m_BaseHeight
string m_Text
bool m_bExpanded
const CRowDisplayStyle * m_Style
CScoreCache * m_Cache
 row display style
CRef< CAlignRowGraphCont > m_GraphCont
CGlDisplayList m_DList
 Graphics caching.
TVPUnit m_PixLeft
TVPUnit m_PixRight
TModelUnit m_ModelLeft
TModelUnit m_ModelRight

Member Typedef Documentation

typedef CScoreCache::TScoreColl::const_iterator CAlnVecRow::TScoreConstIterator [protected]
 

Definition at line 131 of file align_row.hpp.

typedef IAlnExplorer::TSignedRange CAlnVecRow::TSignedRange
 

Definition at line 78 of file align_row.hpp.

Member Enumeration Documentation

enum CAlnVecRow::EButtons [protected]
 

Enumerator:
eInvalid 
eStrandMarker 
eExpand 
eSetupGraphs 

Definition at line 125 of file align_row.hpp.

Constructor & Destructor Documentation

CAlnVecRow::CAlnVecRow (  const IAlignRowHandle &  handle  ) 
 

CAlnVecRow.

Definition at line 85 of file align_row.cpp.

References CLabel::eDefault, IAlignRowHandle::GetBioseqHandle(), CLabel::GetLabel(), m_Handle, and m_Text.

CAlnVecRow::CAlnVecRow (  const IAlignRowHandle &  handle,
vector< IAlnVecRowGraph * > &  graphs
) 
 

Definition at line 101 of file align_row.cpp.

References _ASSERT, CEventHandler::AddListener(), CLabel::eDefault, CEventHandler::ePool_Child, CEventHandler::ePool_Parent, IAlignRowHandle::GetBioseqHandle(), CLabel::GetLabel(), CRef< C, Locker >::GetPointer(), m_GraphCont, m_Handle, m_Text, NON_CONST_ITERATE, and CRef< C, Locker >::Reset().

&CAlnVecRow::x_OnGraphSizeChanged CAlnVecRow::~CAlnVecRow (   ) 
 

Definition at line 137 of file align_row.cpp.

Member Function Documentation

CAlnVecRow::DECLARE_EVENT_MAP (   )  [protected]
 

void CAlnVecRow::Expand (  bool  b_exp  )  [virtual]
 

Definition at line 1656 of file align_row.cpp.

References IAlignRowHost::ARH_OnRowChanged(), IsExpandable(), IsExpanded(), m_bExpanded, m_GraphCont, x_GetHost(), and x_UpdateRowHeight().

Referenced by x_OnClickExpandBtn().

TSeqPos CAlnVecRow::GetColumnAsSeqPos (  TColumnType  type,
const TModelRect &  rc_vis
)  [virtual]
 

Definition at line 1702 of file align_row.cpp.

References IAlignRow::eEnd, IAlnExplorer::eLeft, IAlnExplorer::eRight, IAlignRow::eSeqEnd, IAlignRow::eSeqLength, IAlignRow::eSeqStart, IAlignRow::eStart, IAlignRowHandle::GetBioseqHandle(), IAlignRowHandle::GetSeqPosFromAlnPos(), IAlignRowHandle::GetSeqStart(), IAlignRowHandle::GetSeqStop(), IAlignRowHandle::IsNegativeStrand(), CGlRect< T >::Left(), m_Handle, and CGlRect< T >::Right().

string CAlnVecRow::GetColumnAsString (  TColumnType  type  )  [virtual]
 

Definition at line 1734 of file align_row.cpp.

References IAlignRow::eDescr, and m_Text.

const CRowDisplayStyle * CAlnVecRow::GetDisplayStyle (   )  [virtual]
 

Implements IAlignRow.

Definition at line 280 of file align_row.cpp.

References m_Style.

int CAlnVecRow::GetHeightPixels (   )  const [virtual]
 

Returns height of the row in pixels.

Implements IAlignRow.

Definition at line 298 of file align_row.cpp.

References m_Height.

void CAlnVecRow::GetHTMLActiveAreas (  TColumnType  col_type,
CGlPane &  pane,
TAreaVector &  areas
)  [virtual]
 

Definition at line 159 of file align_row.cpp.

References CGlPane::Close(), IAlignRowHandle::CreateSegmentIterator(), IAlignRow::eAlignment, IAlignRow::eDescr, eExpand, CAlnMultiRenderer::eHtmlArea_CheckBox, CAlnMultiRenderer::eHtmlArea_Link, IAlignRow::eIcons, IAlnSegmentIterator::eSkipInserts, COpenRange< Position >::GetFrom(), IAlignRowHandle::GetRowNum(), IAlignRowHandle::GetSeqAlnStart(), IAlignRowHandle::GetSeqAlnStop(), COpenRange< Position >::GetToOpen(), CGlPane::GetViewport(), CGlPane::GetVisibleRect(), NStr::IntToString(), IsExpandable(), CGlRect< T >::Left(), m_Handle, m_Text, CGlPane::OpenOrtho(), CGlPane::ProjectX(), CGlRect< T >::Right(), CGlRect< T >::SetHorz(), and x_GetButtonRect().

const IAlnRowGraphProperties * CAlnVecRow::GetProperties (   )  const [virtual]
 

Definition at line 1683 of file align_row.cpp.

References m_GraphCont.

int CAlnVecRow::GetRowNum (   )  const [virtual]
 

Returns index of row in IAlnMultiDataSource.

Implements IAlignRow.

Definition at line 292 of file align_row.cpp.

References IAlignRowHandle::GetRowNum(), and m_Handle.

string CAlnVecRow::GetTooltip (  const TVPPoint &  vp_pt,
TColumnType  col_type,
CGlPane &  pane
)  [virtual]
 

returns tooltip text by point in the viewport coordinates

Definition at line 361 of file align_row.cpp.

References IAlignRow::eAlignment, IAlignRow::eDescr, IAlignRow::eEnd, IAlignRow::eIcons, IAlignRow::eSeqEnd, IAlignRow::eSeqLength, IAlignRow::eSeqStart, IAlignRow::eStart, x_GetAlignmentTooltip(), x_GetDescrTooltip(), and x_GetIconsTooltip().

void CAlnVecRow::GraphicsCacheCmd (  EGraphCacheCmd  cmd  )  [virtual]
 

Definition at line 150 of file align_row.cpp.

References CGlDisplayList::Delete(), IAlignRow::eDelete, IAlignRow::eInvalidate, CGlDisplayList::Invalidate(), and m_DList.

bool CAlnVecRow::IsExpandable (   )  const [virtual]
 

Definition at line 1643 of file align_row.cpp.

Referenced by Expand(), GetHTMLActiveAreas(), x_GetIconsTooltip(), and x_RenderIconExpand().

bool CAlnVecRow::IsExpanded (   )  const [virtual]
 

Definition at line 1650 of file align_row.cpp.

References m_bExpanded.

Referenced by Expand(), x_OnClickExpandBtn(), and x_RenderGraph().

void CAlnVecRow::OnMouseEvent (  wxMouseEvent &  event,
TColumnType  col_type,
CGlPane &  pane
)  [virtual]
 

Definition at line 340 of file align_row.cpp.

References IAlignRowHost::ARH_GetVPPosByWindowPos(), eExpand, IAlignRow::eIconExpand, pos, CGlRect< T >::PtInRect(), x_GetButtonRect(), x_GetHost(), and x_OnClickExpandBtn().

void CAlnVecRow::RenderColumn (  TColumnType  col_type,
CGlPane &  pane,
int  state
)  [virtual]
 

Definition at line 304 of file align_row.cpp.

References IAlignRow::eAlignment, IAlignRow::eDescr, IAlignRow::eEnd, IAlignRow::eIconExpand, IAlignRow::eIcons, IAlignRow::eIconStrand, ERR_POST, error(), IAlignRow::eSeqEnd, IAlignRow::eSeqLength, IAlignRow::eSeqStart, IAlignRow::eStart, CException::GetMsg(), m_Style, NCBI_ASSERT, x_RenderAlign(), x_RenderDescr(), x_RenderEndPos(), x_RenderIconExpand(), x_RenderIcons(), x_RenderIconStrand(), x_RenderSeqEnd(), x_RenderSeqLength(), x_RenderSeqStart(), and x_RenderStartPos().

void CAlnVecRow::SetDisplayStyle (  const CRowDisplayStyle *  style  )  [virtual]
 

Implements IAlignRow.

Definition at line 238 of file align_row.cpp.

References m_Style, and UpdateOnStyleChanged().

Referenced by CAlnMultiModel::x_CreateRow().

void CAlnVecRow::SetHost (  IAlignRowHost *  host  )  [virtual]
 

Implements IAlignRow.

Definition at line 286 of file align_row.cpp.

References m_Host.

void CAlnVecRow::SetProperties (  IAlnRowGraphProperties *  props  )  [virtual]
 

Definition at line 1689 of file align_row.cpp.

References m_BaseHeight, m_GraphCont, and m_Height.

void CAlnVecRow::SetScoreCache (  CScoreCache *  cache  )  [virtual]
 

Definition at line 144 of file align_row.cpp.

References m_Cache.

Referenced by CAlnMultiModel::x_CreateRow().

void CAlnVecRow::UpdateOnAnchorChanged (   )  [virtual]
 

Reimplemented from IAlignRow.

Definition at line 257 of file align_row.cpp.

References m_bExpanded, and m_GraphCont.

void CAlnVecRow::UpdateOnStyleChanged (   )  [virtual]
 

Implements IAlignRow.

Definition at line 246 of file align_row.cpp.

References m_BaseHeight, m_bExpanded, m_GraphCont, m_Height, and x_GetBaseHeight().

Referenced by SetDisplayStyle().

bool CAlnVecRow::x_CanRenderSeq (  CGlPane &  pane  )  [protected, virtual]
 

Checks if sequence can be drawn.

Definition at line 1221 of file align_row.cpp.

References IGlFont::eMetric_MaxCharWidth, CGlBitmapFont::GetMetric(), CGlPane::GetScaleX(), CRowDisplayStyle::GetSeqFont(), and m_Style.

Referenced by x_RenderAlign().

string CAlnVecRow::x_GetAlignmentTooltip (  const TVPPoint &  pt,
CGlPane &  pane
)  [protected, virtual]
 

Definition at line 463 of file align_row.cpp.

References m_bExpanded, m_GraphCont, CGlRect< T >::PtInRect(), CGlPoint< T >::X(), and CGlPoint< T >::Y().

Referenced by GetTooltip().

string CAlnVecRow::x_GetAlignmentTooltip_Gap (  const TSignedSeqRange &  aln_r,
const TSignedSeqRange &  seq_r
)  [protected]
 

Definition at line 596 of file align_row.cpp.

References FormatRange(), COpenRange< Position >::GetFrom(), and COpenRange< Position >::GetTo().

string CAlnVecRow::x_GetAlignmentTooltip_General (  const TSeqPos  pos  )  [protected]
 

Definition at line 557 of file align_row.cpp.

References NStr::fWithCommas, IAlignRowHandle::GetSeqPosFromAlnPos(), NStr::IntToString(), IAlignRowHandle::IsNegativeStrand(), m_Handle, and m_Text.

string CAlnVecRow::x_GetAlignmentTooltip_Insert (  const TSignedSeqRange &  aln_r,
const TSignedSeqRange &  seq_r
)  [protected]
 

Definition at line 575 of file align_row.cpp.

References FormatRange(), NStr::fWithCommas, COpenRange< Position >::GetFrom(), COpenRange< Position >::GetTo(), NStr::IntToString(), and x_GetTooltipSequence().

string CAlnVecRow::x_GetAlignmentTooltip_Unaligned (  TSignedSeqPos  aln_prev_to,
TSignedSeqPos  aln_from,
TSignedSeqPos  prev_to,
TSignedSeqPos  from
)  [protected]
 

Definition at line 607 of file align_row.cpp.

References FormatRange(), NStr::fWithCommas, NStr::IntToString(), and x_GetTooltipSequence().

int CAlnVecRow::x_GetBaseHeight (   )  const [protected, virtual]
 

Definition at line 266 of file align_row.cpp.

References CRowDisplayStyle::GetSeqFont(), CRowDisplayStyle::GetTextFont(), kSeqVertSpace, kTextVertSpace, m_Style, and CGlBitmapFont::TextHeight().

Referenced by UpdateOnStyleChanged().

TVPRect CAlnVecRow::x_GetButtonRect (  CGlPane &  pane,
EButtons  btn,
int  shift = 1
)  [protected, virtual]
 

Definition at line 1349 of file align_row.cpp.

References CGlPane::GetViewport(), CGlRect< T >::Left(), m_BaseHeight, and CGlRect< T >::Top().

Referenced by GetHTMLActiveAreas(), OnMouseEvent(), x_RenderIconExpand(), x_RenderIcons(), and x_RenderIconStrand().

string CAlnVecRow::x_GetDescrTooltip (  const TVPPoint &  pt,
CGlPane &  pane
)  [protected, virtual]
 

first, the text for our row

next, title of the bioseq

org info

sequence length information

Definition at line 387 of file align_row.cpp.

References IAlignRowHandle::GetBioseqHandle(), COrg_ref::GetLabel(), GetOrg_ref(), GetTitle(), CBioseq_Handle::IsNa(), m_Handle, and m_Text.

Referenced by GetTooltip().

IAlignRowHost* CAlnVecRow::x_GetHost (   )  [inline, protected]
 

Definition at line 195 of file align_row.hpp.

References m_Host.

Referenced by Expand(), OnMouseEvent(), and x_GetIconsTooltip().

string CAlnVecRow::x_GetIconsTooltip (  const TVPPoint &  pt,
CGlPane &  pane
)  [protected, virtual]
 

Definition at line 426 of file align_row.cpp.

References _ASSERT, eExpand, eStrandMarker, IsExpandable(), IAlignRowHandle::IsNegativeStrand(), m_bExpanded, m_Handle, x_GetHost(), and x_HitTestButton().

Referenced by GetTooltip().

string CAlnVecRow::x_GetTooltipSequence (  TSeqPos  from,
TSeqPos  to
)  [protected]
 

Definition at line 628 of file align_row.cpp.

References COpenRange< Position >::GetFrom(), COpenRange< Position >::GetLength(), IAlignRowHandle::GetSeqString(), kMaxSeqInTooltip, m_Handle, and COpenRange< Position >::Set().

Referenced by x_GetAlignmentTooltip_Insert(), and x_GetAlignmentTooltip_Unaligned().

CAlnVecRow::EButtons CAlnVecRow::x_HitTestButton (  CGlPane &  pane,
const TVPPoint &  pt
)  [protected, virtual]
 

Definition at line 1363 of file align_row.cpp.

References CGlPane::GetViewport(), CGlRect< T >::Left(), and CGlPoint< T >::X().

Referenced by x_GetIconsTooltip().

void CAlnVecRow::x_OnClickExpandBtn (   )  [protected, virtual]
 

Definition at line 653 of file align_row.cpp.

References Expand(), and IsExpanded().

Referenced by OnMouseEvent().

void CAlnVecRow::x_OnGraphContentChanged (  CEvent *  evt  )  [protected]
 

Definition at line 1745 of file align_row.cpp.

References IAlignRowHost::ARH_OnRowChanged(), m_Host, and x_UpdateRowHeight().

void CAlnVecRow::x_OnGraphSizeChanged (  CEvent *  evt  )  [protected]
 

Definition at line 1753 of file align_row.cpp.

References IAlignRowHost::ARH_OnRowChanged(), m_Host, and x_UpdateRowHeight().

void CAlnVecRow::x_RenderAlign (  CGlPane &  pane  )  [protected, virtual]
 

Renders graphical part of the row.

Render Alignment segments & Gaps

Render Inserts

Render Sequence

Render Graph

Definition at line 671 of file align_row.cpp.

References _ASSERT, CGlPane::Close(), color, IAlignRowHandle::CreateSegmentIterator(), CWidgetDisplayStyle::eAlignSegs, CWidgetDisplayStyle::eAlignSegsNoScores, IAlnSegmentIterator::eAllSegments, f(), CRowDisplayStyle::GetColor(), CGlPane::GetModelLimitsRect(), CGlPane::GetOffsetY(), CGlPane::GetScaleX(), CScoreCache::GetScoringMethod(), CGlPane::GetVisibleRect(), glColorC(), CScoreCache::HasScores(), IScoringMethod::IsAverageable(), kAlignSpace, CGlRect< T >::Left(), m_BaseHeight, m_Cache, m_Handle, m_Style, CGlPane::OpenOrtho(), CGlRect< T >::Right(), CGlRect< T >::Top(), x_CanRenderSeq(), x_RenderAlignScores(), x_RenderAlignSegments(), x_RenderInserts(), x_RenderSequence(), and x_RenderUnaligned().

Referenced by RenderColumn().

void CAlnVecRow::x_RenderAlignScores (  CGlPane &  pane,
IAlnSegmentIterator &  it_seg,
int  top_y,
int  bottom_y,
bool  averageable
)  [protected, virtual]
 

Definition at line 943 of file align_row.cpp.

References CGlPane::GetViewport(), CGlPane::GetVisibleRect(), CGlDisplayList::Invalidate(), CGlRect< T >::Left(), m_DList, m_ModelLeft, m_ModelRight, m_PixLeft, m_PixRight, CGlPane::OpenPixels(), CGlRect< T >::Right(), and CGlRect< T >::Top().

Referenced by x_RenderAlign().

void CAlnVecRow::x_RenderAlignSegments (  CGlPane &  pane,
IAlnSegmentIterator &  it,
TModelUnit  top_y,
TModelUnit  bottom_y,
const CRgbaColor &  color
)  [protected, virtual]
 

Render Segments

Rasterize segments - raster represents density of pixel coverage by segments

otherwise consider it to be transparent

use density as a measure of transparency

Definition at line 839 of file align_row.cpp.

References CGlPane::Close(), color, CGlPane::GetOffsetX(), IAlignRowHandle::GetSeqAlnStart(), IAlignRowHandle::GetSeqAlnStop(), CGlPane::GetViewport(), CGlPane::GetVisibleRect(), glColorC(), glLined(), CGlRect< T >::Left(), m_Handle, CGlPane::OpenOrtho(), CGlPane::OpenPixels(), and CGlRect< T >::Right().

Referenced by x_RenderAlign().

void CAlnVecRow::x_RenderAlnPos (  CGlPane &  pane,
TSeqPos  aln_pos,
IAlnExplorer::ESearchDirection  dir,
int  state
)  [protected, virtual]
 

Definition at line 1565 of file align_row.cpp.

References IGlFont::eAlign_Right, IAlnExplorer::eLeft, IAlnExplorer::eRight, CTextUtils::FormatSeparatedNumber(), IAlignRowHandle::GetSeqPosFromAlnPos(), m_Handle, and x_RenderTextCell().

Referenced by x_RenderEndPos(), and x_RenderStartPos().

void CAlnVecRow::x_RenderAveragableScores (  CGlPane &  pane,
IAlnSegmentIterator &  it_seg,
TScoreConstIterator  it,
const TScoreConstIterator  it_end,
int  vp_top_y,
int  vp_bottom_y
)  [protected, virtual]
 

apply attributes to the intersection

advance iterators

Definition at line 1049 of file align_row.cpp.

References COpenRange< Position >::GetFrom(), IAlignRowHandle::GetSeqAlnStart(), IAlignRowHandle::GetSeqAlnStop(), COpenRange< Position >::GetTo(), CGlPane::GetViewport(), CGlPane::GetVisibleRect(), CGlRect< T >::Left(), m_Handle, and CGlRect< T >::Right().

void CAlnVecRow::x_RenderDescr (  CGlPane &  pane,
int  state
)  [protected, virtual]
 

Definition at line 1296 of file align_row.cpp.

References _ASSERT, IGlFont::eAlign_Left, m_Style, m_Text, and x_RenderTextCell().

Referenced by RenderColumn().

void CAlnVecRow::x_RenderEmptyBox (  CGlPane &  pane  )  [protected, virtual]
 

Definition at line 1634 of file align_row.cpp.

References CGlRect< T >::Bottom(), CWidgetDisplayStyle::eFrame, CRowDisplayStyle::GetColor(), CGlPane::GetViewport(), glColorC(), CGlRect< T >::Left(), m_Style, CGlRect< T >::Right(), and CGlRect< T >::Top().

Referenced by x_RenderTextCell().

void CAlnVecRow::x_RenderEndPos (  CGlPane &  pane,
int  state
)  [protected, virtual]
 

Definition at line 1524 of file align_row.cpp.

References IAlnExplorer::eLeft, CGlPane::GetVisibleRect(), CGlRect< T >::Right(), and x_RenderAlnPos().

Referenced by RenderColumn().

void CAlnVecRow::x_RenderGraph (  CGlPane &  pane,
const TSignedRange &  range
)  [protected, virtual]
 

Definition at line 1304 of file align_row.cpp.

References IAlignRowHandle::CreateSegmentIterator(), IAlnSegmentIterator::eSkipInserts, CGlRect< T >::IntersectWith(), IsExpanded(), m_BaseHeight, m_GraphCont, m_Handle, CGlRect< T >::SetTop(), and CGlRect< T >::Top().

void CAlnVecRow::x_RenderIconExpand (  CGlPane &  pane,
int  state
)  [protected, virtual]
 

if(m_GraphCont && m_GraphCont->HasData()) { // draw "Graph" button rc_btn = x_GetButtonRect(pane, eSetupGraphs); glRectd(rc_btn.Left(), rc_btn.Bottom(), rc_btn.Right(), rc_btn.Top());

m_Style->GetTextFont().TextOut(rc_btn.Left() + 1, rc_btn.Bottom() + 1, kButtonSize - 2, kButtonSize - 2, "...", IGlFont::eAlign_Center); }

Definition at line 1471 of file align_row.cpp.

References _ASSERT, CGlRect< T >::Bottom(), CGlRect< T >::CenterPoint(), CGlPane::Close(), eExpand, eStrandMarker, CWidgetDisplayStyle::eText, CRowDisplayStyle::GetColor(), glColorC(), IsExpandable(), kButtonSize, CGlRect< T >::Left(), m_bExpanded, m_Style, CGlPane::OpenPixels(), CGlRect< T >::Right(), CGlRect< T >::Top(), CGlPoint< T >::X(), x_GetButtonRect(), and CGlPoint< T >::Y().

Referenced by RenderColumn().

void CAlnVecRow::x_RenderIcons (  CGlPane &  pane,
int  state
)  [protected, virtual]
 

if(m_GraphCont && m_GraphCont->HasData()) { // draw "Graph" button rc_btn = x_GetButtonRect(pane, eSetupGraphs); glRectd(rc_btn.Left(), rc_btn.Bottom(), rc_btn.Right(), rc_btn.Top());

m_Style->GetTextFont().TextOut(rc_btn.Left() + 1, rc_btn.Bottom() + 1, kButtonSize - 2, kButtonSize - 2, "...", IGlFont::eAlign_Center); }

Definition at line 1381 of file align_row.cpp.

References _ASSERT, CGlRect< T >::CenterPoint(), eStrandMarker, half, CGlRect< T >::Height(), IAlignRowHandle::IsNegativeStrand(), CGlRect< T >::Left(), m_Handle, m_Style, CGlPane::OpenPixels(), CGlRect< T >::Right(), swap(), and x_GetButtonRect().

Referenced by RenderColumn().

void CAlnVecRow::x_RenderIconStrand (  CGlPane &  pane,
int  state
)  [protected, virtual]
 

Definition at line 1442 of file align_row.cpp.

References _ASSERT, CGlRect< T >::CenterPoint(), eExpand, half, CGlRect< T >::Height(), IAlignRowHandle::IsNegativeStrand(), CGlRect< T >::Left(), m_Handle, m_Style, CGlPane::OpenPixels(), CGlRect< T >::Right(), swap(), and x_GetButtonRect().

Referenced by RenderColumn().

void CAlnVecRow::x_RenderInserts (  CGlPane &  pane,
int  from,
int  to,
TModelUnit  top_y,
TModelUnit  bottom_y
)  [protected, virtual]
 

Definition at line 757 of file align_row.cpp.

References CompressLength(), IAlignRowHandle::CreateSegmentIterator(), IAlnSegmentIterator::eInsertsOnly, f(), CGlPane::GetOffsetX(), CGlPane::GetScaleX(), glColorC(), glLined(), len, and m_Handle.

Referenced by x_RenderAlign().

void CAlnVecRow::x_RenderNonAveragableScores (  CGlPane &  pane,
IAlnSegmentIterator &  it_seg,
TScoreConstIterator  it,
const TScoreConstIterator  it_end,
int  vp_top_y,
int  vp_bottom_y
)  [protected, virtual]
 

apply attributes to the intersection

advance iterators

Definition at line 1148 of file align_row.cpp.

References FSetPixMaxCoverage(), COpenRange< Position >::GetFrom(), IAlignRowHandle::GetSeqAlnStart(), IAlignRowHandle::GetSeqAlnStop(), COpenRange< Position >::GetTo(), CGlPane::GetViewport(), CGlPane::GetVisibleRect(), CGlRect< T >::Left(), m_Handle, and CGlRect< T >::Right().

void CAlnVecRow::x_RenderSeqEnd (  CGlPane &  pane,
int  state
)  [protected, virtual]
 

Definition at line 1544 of file align_row.cpp.

References IGlFont::eAlign_Right, CTextUtils::FormatSeparatedNumber(), IAlignRowHandle::GetSeqStart(), IAlignRowHandle::GetSeqStop(), IAlignRowHandle::IsNegativeStrand(), m_Handle, and x_RenderTextCell().

Referenced by RenderColumn().

void CAlnVecRow::x_RenderSeqLength (  CGlPane &  pane,
int  state
)  [protected, virtual]
 

Definition at line 1555 of file align_row.cpp.

References IGlFont::eAlign_Right, CTextUtils::FormatSeparatedNumber(), IAlignRowHandle::GetBioseqHandle(), m_Handle, and x_RenderTextCell().

Referenced by RenderColumn().

void CAlnVecRow::x_RenderSeqStart (  CGlPane &  pane,
int  state
)  [protected, virtual]
 

Definition at line 1533 of file align_row.cpp.

References IGlFont::eAlign_Right, CTextUtils::FormatSeparatedNumber(), IAlignRowHandle::GetSeqStart(), IAlignRowHandle::GetSeqStop(), IAlignRowHandle::IsNegativeStrand(), m_Handle, and x_RenderTextCell().

Referenced by RenderColumn().

void CAlnVecRow::x_RenderSequence (  CGlPane &  pane,
TModelUnit  top_y,
TModelUnit  bottom_y,
int  start,
int  stop
)  [protected, virtual]
 

need to draw colored sequence on colored background

simply render the sequence

Definition at line 1235 of file align_row.cpp.

References _ASSERT, IScoringMethod::fForeground, IAlignRowHandle::GetAlnSeqString(), CGlPane::GetOffsetX(), CGlPane::GetScaleX(), CScoreCache::GetScoringMethod(), CRowDisplayStyle::GetSeqFont(), H, CScoreCache::HasScores(), IfDash(), m_Cache, m_Handle, m_Style, and CGlBitmapFont::TextHeight().

Referenced by x_RenderAlign().

void CAlnVecRow::x_RenderStartPos (  CGlPane &  pane,
int  state
)  [protected, virtual]
 

Definition at line 1515 of file align_row.cpp.

References IAlnExplorer::eRight, CGlPane::GetVisibleRect(), CGlRect< T >::Left(), and x_RenderAlnPos().

Referenced by RenderColumn().

void CAlnVecRow::x_RenderTextCell (  CGlPane &  pane,
const string &  text,
int  state,
IGlFont::TAlign  align
)  [protected, virtual]
 

Definition at line 1588 of file align_row.cpp.

References _ASSERT, CGlRect< T >::Bottom(), CGlPane::Close(), CWidgetDisplayStyle::eFocusedBack, CWidgetDisplayStyle::eSelectedBack, CWidgetDisplayStyle::eSelectedText, CWidgetDisplayStyle::eText, IAlignRow::fItemFocused, IAlignRow::fItemSelected, IAlignRow::fWidgetFocused, CRowDisplayStyle::GetColor(), CRowDisplayStyle::GetTextFont(), CGlPane::GetViewport(), glColorC(), kTextOffsetX, CGlRect< T >::Left(), m_BaseHeight, m_Style, CGlPane::OpenPixels(), CGlRect< T >::Right(), CGlBitmapFont::TextOut(), CGlRect< T >::Top(), CGlRect< T >::Width(), and x_RenderEmptyBox().

Referenced by x_RenderAlnPos(), x_RenderDescr(), x_RenderSeqEnd(), x_RenderSeqLength(), and x_RenderSeqStart().

void CAlnVecRow::x_RenderUnaligned (  CGlPane &  pane,
int  from,
int  to,
TModelUnit  top_y,
TModelUnit  bottom_y
)  [protected, virtual]
 

Definition at line 789 of file align_row.cpp.

References CompressLength(), IAlignRowHandle::CreateSegmentIterator(), IAlnSegmentIterator::eSkipGaps, f(), COpenRange< Position >::GetFrom(), CGlPane::GetOffsetX(), CGlPane::GetScaleX(), glColorC(), glLined(), len, and m_Handle.

Referenced by x_RenderAlign().

void CAlnVecRow::x_UpdateRowHeight (   )  [protected, virtual]
 

Definition at line 1674 of file align_row.cpp.

References m_BaseHeight, m_GraphCont, and m_Height.

Referenced by Expand(), x_OnGraphContentChanged(), and x_OnGraphSizeChanged().

Member Data Documentation

int CAlnVecRow::m_BaseHeight [protected]
 

Definition at line 208 of file align_row.hpp.

Referenced by SetProperties(), UpdateOnStyleChanged(), x_GetButtonRect(), x_RenderAlign(), x_RenderGraph(), x_RenderTextCell(), and x_UpdateRowHeight().

bool CAlnVecRow::m_bExpanded [protected]
 

Definition at line 211 of file align_row.hpp.

Referenced by Expand(), IsExpanded(), UpdateOnAnchorChanged(), UpdateOnStyleChanged(), x_GetAlignmentTooltip(), x_GetIconsTooltip(), and x_RenderIconExpand().

CScoreCache* CAlnVecRow::m_Cache [protected]
 

row display style

Definition at line 215 of file align_row.hpp.

Referenced by SetScoreCache(), x_RenderAlign(), and x_RenderSequence().

CGlDisplayList CAlnVecRow::m_DList [protected]
 

Graphics caching.

Definition at line 220 of file align_row.hpp.

Referenced by GraphicsCacheCmd(), and x_RenderAlignScores().

CRef<CAlignRowGraphCont> CAlnVecRow::m_GraphCont [protected]
 

Definition at line 217 of file align_row.hpp.

Referenced by CAlnVecRow(), Expand(), GetProperties(), SetProperties(), UpdateOnAnchorChanged(), UpdateOnStyleChanged(), x_GetAlignmentTooltip(), x_RenderGraph(), and x_UpdateRowHeight().

const IAlignRowHandle& CAlnVecRow::m_Handle [protected]
 

Definition at line 203 of file align_row.hpp.

Referenced by CAlnVecRow(), GetColumnAsSeqPos(), GetHTMLActiveAreas(), GetRowNum(), x_GetAlignmentTooltip_General(), x_GetDescrTooltip(), x_GetIconsTooltip(), x_GetTooltipSequence(), x_RenderAlign(), x_RenderAlignSegments(), x_RenderAlnPos(), x_RenderAveragableScores(), x_RenderGraph(), x_RenderIcons(), x_RenderIconStrand(), x_RenderInserts(), x_RenderNonAveragableScores(), x_RenderSeqEnd(), x_RenderSeqLength(), x_RenderSeqStart(), x_RenderSequence(), and x_RenderUnaligned().

int CAlnVecRow::m_Height [protected]
 

Definition at line 207 of file align_row.hpp.

Referenced by GetHeightPixels(), SetProperties(), UpdateOnStyleChanged(), and x_UpdateRowHeight().

IAlignRowHost* CAlnVecRow::m_Host [protected]
 

Definition at line 205 of file align_row.hpp.

Referenced by SetHost(), x_GetHost(), x_OnGraphContentChanged(), and x_OnGraphSizeChanged().

TModelUnit CAlnVecRow::m_ModelLeft [protected]
 

Definition at line 222 of file align_row.hpp.

Referenced by x_RenderAlignScores().

TModelUnit CAlnVecRow::m_ModelRight [protected]
 

Definition at line 222 of file align_row.hpp.

Referenced by x_RenderAlignScores().

TVPUnit CAlnVecRow::m_PixLeft [protected]
 

Definition at line 221 of file align_row.hpp.

Referenced by x_RenderAlignScores().

TVPUnit CAlnVecRow::m_PixRight [protected]
 

Definition at line 221 of file align_row.hpp.

Referenced by x_RenderAlignScores().

const CRowDisplayStyle* CAlnVecRow::m_Style [protected]
 

Definition at line 213 of file align_row.hpp.

Referenced by GetDisplayStyle(), RenderColumn(), SetDisplayStyle(), x_CanRenderSeq(), x_GetBaseHeight(), x_RenderAlign(), x_RenderDescr(), x_RenderEmptyBox(), x_RenderIconExpand(), x_RenderIcons(), x_RenderIconStrand(), x_RenderSequence(), and x_RenderTextCell().

string CAlnVecRow::m_Text [protected]
 

Definition at line 209 of file align_row.hpp.

Referenced by CAlnVecRow(), GetColumnAsString(), GetHTMLActiveAreas(), x_GetAlignmentTooltip_General(), x_GetDescrTooltip(), and x_RenderDescr().

The documentation for this class was generated from the following files:
Generated on Mon Dec 7 09:57:40 2009 for NCBI C++ ToolKit by  doxygen 1.4.6
Modified on Mon Dec 07 16:22:27 2009 by modify_doxy.py rev. 173732