CAlnMultiWidget Class Reference

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#include <alnmulti_widget.hpp>

Inheritance diagram for CAlnMultiWidget:

[legend]Collaboration diagram for CAlnMultiWidget:

[legend]List of all members.

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Detailed Description

class CAlnMultiWidget

CAlnMultiWidget is a reusable component for visual presntations of multiple alignments. CAlnMultiWidget works as Mediator to organize interaction of its internal components and to support communication with external components. Data Source is an external component that serves as a source of alignment data. CAlnMultiWidget builds a visual Model object around provided Data Source and uses CAlnMultiPane component to represent this model. CAlnMultiWidget provides API for external components allowing for executing commands and retrieving state information such as selections.

Definition at line 89 of file alnmulti_widget.hpp.

Public Types
typedef CAlnMultiModel::TNumrow	TNumrow
typedef int	TLine
typedef list< objects::CSeq_loc * >	TPSeqLocList
typedef CRangeCollection< TSeqPos >	TRangeColl
typedef vector< CConstRef< objects::CSeq_id > >	TRSeqIdVector
Public Member Functions
	CAlnMultiWidget (wxWindow *parent, wxWindowID id=wxID_ANY, const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxDefaultSize, long style=0, const wxString &name=_T("panel"))
virtual	~CAlnMultiWidget ()
virtual void	SetDataSource (IAlnMultiDataSource *p_ds)
virtual void	CreateWidget (CAlnMultiModel *model)
	performs initialization, creates Model and Controls.
virtual CAlnMultiModel *	GetModel ()
virtual const CAlnMultiModel *	GetModel () const
virtual void	SetStyleCatalog (const CRowStyleCatalog *catalog)
virtual const CWidgetDisplayStyle *	GetDisplayStyle () const
virtual void	SetVisible (const vector< TNumrow > &rows, bool b_visible, bool b_invert_others=false)
	makes specified rows visible/hidden, other rows aren't affected
virtual void	Select (const vector< TNumrow > &rows, bool b_select, bool b_invert_others=false)
virtual IAlnMultiDataSource *	GetDataSource ()
void	OnContextMenu (wxContextMenuEvent &event)
virtual void	UpdateSortOrder ()
virtual void	UpdateOnScoringChanged ()
void	Print (const string &filename)
	Scroll callbacks.
void	UpdateView ()
CGlWidgetBase virtual functions
virtual CGlPane &	GetPort ()
	implement these 2 functions in derived classes
virtual const CGlPane &	GetPort () const
	implement these 2 functions in derived classes
virtual void	x_SetPortLimits (void)
	updates model limits of the Master CGlPane
virtual CGlWidgetPane *	x_GetPane ()
virtual void	LoadSettings ()
virtual void	SaveSettings () const
IAlnMultiRenderContext implementation
virtual bool	IsRendererFocused ()
	overriding base class implementation
IAlnMultiPaneParent implementation
virtual const IAlnMultiDataSource *	GetDataSource () const
virtual TNumrow	GetRowNumByLine (TLine line) const
virtual int	GetLineByRowNum (TNumrow Row) const
	return -1 if "row" does not exist or is not visible
virtual void	OnChildResize ()
virtual void	SetScaleX (TModelUnit scale_x, const TModelPoint &point)
virtual void	ZoomRect (const TModelRect &rc)
virtual void	ZoomPoint (const TModelPoint &point, TModelUnit factor)
virtual void	Scroll (TModelUnit d_x, TModelUnit d_y)
virtual void	OnRowChanged (IAlignRow *p_row)
virtual void	OnColumnsChanged ()
CUIDataSource::IListener implementation
virtual void	OnDSChanged (CDataChangeNotifier::CUpdate &update)
CAlnMultiModel::IListener implementation
virtual void	OnScoringProgress (float progress, const string &msg)
virtual void	OnScoringFinished ()
Command Handlers
void	OnZoomSequence (wxCommandEvent &event)
void	OnZoomSelection (wxCommandEvent &event)
void	OnUpdateZoomSelection (wxUpdateUIEvent &event)
void	OnMakeSelectedRowMaster (wxCommandEvent &event)
void	OnUpdateMakeSelectedRowMaster (wxUpdateUIEvent &event)
void	OnUnsetMaster (wxCommandEvent &event)
void	OnUpdateUnsetMaster (wxUpdateUIEvent &event)
void	OnMakeConsensusRowMaster (wxCommandEvent &event)
void	OnUpdateMakeConsensusRowMaster (wxUpdateUIEvent &event)
void	OnResetSelection (wxCommandEvent &event)
void	OnMarkSelected (wxCommandEvent &event)
void	OnUnMarkSelected (wxCommandEvent &event)
	mark selected regions of selected rows
void	OnUpdateMarkSelected (wxUpdateUIEvent &event)
	unmark selected regions of selected rows
void	OnUnMarkAll (wxCommandEvent &event)
void	OnHideSelected (wxCommandEvent &event)
void	OnShowOnlySelected (wxCommandEvent &event)
	hide selected rows
void	OnShowAll (wxCommandEvent &event)
	hide rows that are not selected
void	OnMoveSelectedUp (wxCommandEvent &event)
	show all hidden rows
void	OnSettings (wxCommandEvent &event)
void	OnUpdateSettings (wxUpdateUIEvent &event)
Command handler for Scoring methods management
void	OnShowMethodDlg (wxCommandEvent &event)
void	OnUpdateShowMethodDlg (wxUpdateUIEvent &event)
void	OnDisableScoring (wxCommandEvent &event)
void	OnUpdateDisableScoring (wxUpdateUIEvent &event)
void	OnMethodProperties (wxCommandEvent &event)
void	OnUpdateMethodProperties (wxUpdateUIEvent &event)
void	OnScoringMethod (wxCommandEvent &event)
void	OnUpdateScoringMethod (wxUpdateUIEvent &event)
void	OnSetAsDefaultMethod (wxCommandEvent &event)
Selection handling
void	GetSelectedIds (TRSeqIdVector &ids) const
void	SetSelectedIds (const TRSeqIdVector &ids, objects::CScope &scope)
void	GetSelectedRows (vector< TNumrow > &rows)
const TRangeColl &	GetSelection (void) const
void	SetSelection (const TRangeColl &coll)
void	GetMarks (TPSeqLocList &ls_locs) const
Static Public Member Functions
static void	RegisterCommands (CUICommandRegistry &cmd_reg, wxFileArtProvider &provider)
	class CAlnMultiWidget
Protected Types
typedef map< int, string >	TCmdToName
Protected Member Functions
void	x_CreatePane (void)
	factory method creating master pane, called form x_CreateControls()
virtual CAlnMultiModel *	x_CreateModel ()
	factory method creating and initializing a default model
virtual void	x_AdjustVisible (bool b_reset)
virtual void	x_RedrawControls (void)
virtual void	x_UpdateStyleColumns ()
void	x_ZoomToRange (TSeqPos from, TSeqPos to)
void	x_MakeVisibleHorz (TSeqPos pos)
void	x_MakeVisibleHorz (TSeqPos from, TSeqPos to)
virtual wxMenu *	x_CreatePopupMenu ()
virtual string	x_GetCurrentMethodName () const
virtual void	x_SetScoringMethod (const string &method_name, bool save)
virtual void	x_CreateScoringMethodsMenu (wxMenu &color_menu)
virtual string *	x_GetDefMethodName ()
virtual string	x_GetScoringMRUListName ()
Update handlers
Functions in this group are called by the widget when something changes. Each functions performs minimal set of operations needed to keep widget up-to-date.
virtual void	x_UpdateOnDataChanged (bool b_reset=true)
	Update handlers.
virtual void	x_UpdateOnRowHChanged (void)
virtual void	x_UpdateOnSwitchMaster (TNumrow NewMasterRow)
virtual void	x_UpdateOnZoom (void)
virtual void	x_UpdateOnStylesChanged (void)
virtual void	x_OnResize (void)
Protected Attributes
IAlnMultiDataSource *	m_DataSource
CAlnMultiModel *	m_Model
	source of alignment data
CAlnMultiPane *	m_AlignPane
	representation of alignment data
TCmdToName	m_CmdToName
	widget rendering data and handling events

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Member Typedef Documentation

typedef map<int, string> CAlnMultiWidget::TCmdToName [protected]

Definition at line 288 of file alnmulti_widget.hpp.

typedef int CAlnMultiWidget::TLine

Definition at line 98 of file alnmulti_widget.hpp.

typedef CAlnMultiModel::TNumrow CAlnMultiWidget::TNumrow

Reimplemented from IAlnMultiPaneParent. Definition at line 97 of file alnmulti_widget.hpp.

typedef list<objects::CSeq_loc*> CAlnMultiWidget::TPSeqLocList

Definition at line 99 of file alnmulti_widget.hpp.

typedef CRangeCollection<TSeqPos> CAlnMultiWidget::TRangeColl

Definition at line 100 of file alnmulti_widget.hpp.

typedef vector<CConstRef<objects::CSeq_id> > CAlnMultiWidget::TRSeqIdVector

Definition at line 101 of file alnmulti_widget.hpp.

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Constructor & Destructor Documentation

CAlnMultiWidget::CAlnMultiWidget (  wxWindow *  parent, wxWindowID  id = wxID_ANY, const wxPoint &  pos = wxDefaultPosition, const wxSize &  size = wxDefaultSize, long  style = 0, const wxString &  name = _T("panel") )

Definition at line 96 of file alnmulti_widget.cpp.

CAlnMultiWidget::~CAlnMultiWidget (   )  [virtual]

Definition at line 136 of file alnmulti_widget.cpp. References m_AlignPane, m_Model, CEventHandler::RemoveListener(), and CAlnMultiModel::SetListener().

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Member Function Documentation

void CAlnMultiWidget::CreateWidget (  CAlnMultiModel *  model  )  [virtual]

performs initialization, creates Model and Controls. Call Create() right after constructing CAlnMultiWidget; assumes ownership of the model. If model == NULL, creates a default model Definition at line 110 of file alnmulti_widget.cpp. References _ASSERT, CAlnMultiPane::GetAlignVPHeight(), CAlnMultiPane::GetAlignVPWidth(), GetPort(), m_AlignPane, m_Model, CAlnMultiModel::SetListener(), CAlnMultiModel::SetPortLimits(), CGlRect< T >::SetSize(), CGlPane::SetViewport(), CGlWidgetBase::x_CreateControls(), and x_CreateModel(). Referenced by CAlignMultipleDemoDlg::CreateControls(), and CMultiAlignView::CreateViewWindow().

const IAlnMultiDataSource * CAlnMultiWidget::GetDataSource (   )  const [virtual]

Implements IAlnMultiPaneParent. Definition at line 196 of file alnmulti_widget.cpp. References m_DataSource.

CAlnMultiWidget::OnUpdateMethodProperties CAlnMultiWidget::OnUpdateScoringMethod IAlnMultiDataSource * CAlnMultiWidget::GetDataSource (   )  [virtual]

Implements IAlnMultiPaneParent. Definition at line 190 of file alnmulti_widget.cpp. Referenced by GetMarks(), GetSelectedIds(), GetSelectedRows(), OnMakeConsensusRowMaster(), OnUpdateShowMethodDlg(), x_UpdateOnDataChanged(), and x_UpdateOnSwitchMaster().

const CWidgetDisplayStyle * CAlnMultiWidget::GetDisplayStyle (   )  const [virtual]

Definition at line 242 of file alnmulti_widget.cpp. References CAlnMultiModel::GetDisplayStyle(), and m_Model. Referenced by CMultiAlignView::CreateViewWindow(), and OnZoomSequence().

int CAlnMultiWidget::GetLineByRowNum (  TNumrow  Row  )  const [virtual]

return -1 if "row" does not exist or is not visible Definition at line 329 of file alnmulti_widget.cpp. References CAlnMultiModel::GetLineByRowNum(), and m_Model.

void CAlnMultiWidget::GetMarks (  TPSeqLocList &  ls_locs  )  const

Definition at line 783 of file alnmulti_widget.cpp. References GetDataSource(), CAlnMultiPane::GetMarks(), IAlnMultiDataSource::GetSeqId(), ITERATE, m_AlignPane, and CSeq_loc_Base::SetPacked_int().

const CAlnMultiModel * CAlnMultiWidget::GetModel (   )  const [virtual]

Definition at line 315 of file alnmulti_widget.cpp. References m_Model.

CAlnMultiModel * CAlnMultiWidget::GetModel (   )  [virtual]

Definition at line 309 of file alnmulti_widget.cpp. References m_Model. Referenced by GetSelectedIds(), and GetSelectedRows().

const CGlPane & CAlnMultiWidget::GetPort (   )  const [virtual]

implement these 2 functions in derived classes Implements CGlWidgetBase. Definition at line 278 of file alnmulti_widget.cpp. References CAlnMultiModel::GetAlignPort(), and m_Model.

CGlPane & CAlnMultiWidget::GetPort (   )  [virtual]

implement these 2 functions in derived classes Implements CGlWidgetBase. Definition at line 272 of file alnmulti_widget.cpp. References CAlnMultiModel::GetAlignPort(), and m_Model. Referenced by CreateWidget(), OnZoomSequence(), Scroll(), SetScaleX(), x_AdjustVisible(), x_MakeVisibleHorz(), x_OnResize(), x_UpdateOnSwitchMaster(), x_ZoomToRange(), and ZoomPoint().

CAlnMultiWidget::TNumrow CAlnMultiWidget::GetRowNumByLine (  TLine  line  )  const [virtual]

Implements IAlnMultiPaneParent. Definition at line 321 of file alnmulti_widget.cpp. References CAlnMultiModel::GetRowByLine(), IAlignRow::GetRowNum(), and m_Model. Referenced by GetSelectedIds(), GetSelectedRows(), and OnMakeSelectedRowMaster().

void CAlnMultiWidget::GetSelectedIds (  TRSeqIdVector &  ids  )  const

Definition at line 566 of file alnmulti_widget.cpp. References _ASSERT, GetDataSource(), GetModel(), GetRowNumByLine(), IAlnMultiDataSource::GetSeqId(), ITERATE, and CSelListModelImpl< Item >::SLM_GetSelectedIndices().

void CAlnMultiWidget::GetSelectedRows (  vector< TNumrow > &  rows  )

Definition at line 583 of file alnmulti_widget.cpp. References GetDataSource(), GetModel(), GetRowNumByLine(), ITERATE, and CSelListModelImpl< Item >::SLM_GetSelectedIndices(). Referenced by CMultiAlignView::GetSelection().

const CAlnMultiWidget::TRangeColl & CAlnMultiWidget::GetSelection (  void   )  const

Definition at line 622 of file alnmulti_widget.cpp. References CAlnMultiPane::GetSelection(), and m_AlignPane. Referenced by CMultiAlignView::x_GetSeqRangeSelection().

bool CAlnMultiWidget::IsRendererFocused (   )  [virtual]

overriding base class implementation Definition at line 434 of file alnmulti_widget.cpp. References m_AlignPane.

void CAlnMultiWidget::LoadSettings (   )  [virtual]

Reimplemented from CGlWidgetBase. Definition at line 248 of file alnmulti_widget.cpp. References CAlnMultiModel::GetDisplayStyle(), CGuiRegistry::GetInstance(), CGuiRegistry::GetReadView(), CWidgetDisplayStyle::LoadSettings(), m_Model, CGlWidgetBase::m_RegPath, and x_UpdateOnStylesChanged(). Referenced by CMultiAlignView::LoadSettings().

void CAlnMultiWidget::OnChildResize (   )  [virtual]

Implements IAlnMultiPaneParent. Definition at line 335 of file alnmulti_widget.cpp. References x_OnResize().

void CAlnMultiWidget::OnColumnsChanged (   )  [virtual]

Implements IAlnMultiPaneParent. Definition at line 394 of file alnmulti_widget.cpp. References SaveSettings(), and x_UpdateStyleColumns().

void CAlnMultiWidget::OnContextMenu (  wxContextMenuEvent &  event  )

Definition at line 375 of file alnmulti_widget.cpp. References eHorz, eVert, m_AlignPane, CGlWidgetBase::m_PopupPoint, CGlPoint< T >::m_X, CGlPoint< T >::m_Y, CAlnMultiPane::SHH_GetModelByWindow(), x_CreatePopupMenu(), and CGlWidgetBase::x_ShowDecoratedPopupMenu().

void CAlnMultiWidget::OnDisableScoring (  wxCommandEvent &  event  )

Definition at line 1110 of file alnmulti_widget.cpp. References x_SetScoringMethod().

void CAlnMultiWidget::OnDSChanged (  CDataChangeNotifier::CUpdate &  update  )  [virtual]

Implements CDataChangeNotifier::IListener. Definition at line 401 of file alnmulti_widget.cpp. References _ASSERT, CDataChangeNotifier::eChanged, eDialog_Ok, CDataChangeNotifier::eError, eIcon_Stop, CDataChangeNotifier::eProgressReport, eWrap, CDataChangeNotifier::CUpdate::GetMessage(), CDataChangeNotifier::CUpdate::GetProgressNorm(), CDataChangeNotifier::CUpdate::GetType(), CAlnMultiPane::HideProgressPanel(), m_AlignPane, m_DataSource, NcbiMessageBox(), SetDataSource(), and CAlnMultiPane::ShowProgressPanel(). Referenced by CMultiAlignView::OnDSChanged().

void CAlnMultiWidget::OnHideSelected (  wxCommandEvent &  event  )

Definition at line 670 of file alnmulti_widget.cpp. References CAlnMultiModel::GetSelectedRows(), m_Model, SetVisible(), and CSelListModelImpl< Item >::SLM_SelectAll().

void CAlnMultiWidget::OnMakeConsensusRowMaster (  wxCommandEvent &  event  )

Definition at line 531 of file alnmulti_widget.cpp. References IAlnMultiDataSource::GetConsensusRow(), GetDataSource(), and x_UpdateOnSwitchMaster().

void CAlnMultiWidget::OnMakeSelectedRowMaster (  wxCommandEvent &  event  )

Definition at line 505 of file alnmulti_widget.cpp. References eDialog_Modal, eDialog_Ok, eIcon_Exclamation, GetRowNumByLine(), m_Model, NcbiMessageBox(), CSelListModelImpl< Item >::SLM_GetSelectedCount(), CSelListModelImpl< Item >::SLM_GetSelectedIndices(), and x_UpdateOnSwitchMaster().

void CAlnMultiWidget::OnMarkSelected (  wxCommandEvent &  event  )

Definition at line 634 of file alnmulti_widget.cpp. References CAlnMultiPane::GetSelection(), m_AlignPane, and CAlnMultiPane::MarkSelectedRows().

void CAlnMultiWidget::OnMethodProperties (  wxCommandEvent &  event  )

Definition at line 1083 of file alnmulti_widget.cpp. References _T, CAlnMultiModel::GetCurrentMethod(), m_Model, UpdateOnScoringChanged(), and CAlnMultiModel::UpdateOnScoringChanged().

void CAlnMultiWidget::OnMoveSelectedUp (  wxCommandEvent &  event  )

show all hidden rows Definition at line 699 of file alnmulti_widget.cpp. References CAlnMultiModel::GetSelectedRows(), m_Model, CAlnMultiModel::SetRowOrder(), and x_RedrawControls().

void CAlnMultiWidget::OnResetSelection (  wxCommandEvent &  event  )

Definition at line 560 of file alnmulti_widget.cpp. References m_AlignPane, and CAlnMultiPane::ResetSelection().

void CAlnMultiWidget::OnRowChanged (  IAlignRow *  p_row  )  [virtual]

Implements IAlnMultiPaneParent. Definition at line 369 of file alnmulti_widget.cpp. References x_UpdateOnRowHChanged().

void CAlnMultiWidget::OnScoringFinished (   )  [virtual]

Implements CScoreCache::IListener. Definition at line 427 of file alnmulti_widget.cpp. References CAlnMultiPane::HideProgressPanel(), and m_AlignPane.

void CAlnMultiWidget::OnScoringMethod (  wxCommandEvent &  event  )

Definition at line 1186 of file alnmulti_widget.cpp. References map_checker< Container >::clear(), m_CmdToName, and x_SetScoringMethod().

void CAlnMultiWidget::OnScoringProgress (  float  progress, const string &  msg )  [virtual]

Implements CScoreCache::IListener. Definition at line 421 of file alnmulti_widget.cpp. References m_AlignPane, and CAlnMultiPane::ShowProgressPanel().

void CAlnMultiWidget::OnSetAsDefaultMethod (  wxCommandEvent &  event  )

Definition at line 1207 of file alnmulti_widget.cpp. References _ASSERT, SaveSettings(), x_GetCurrentMethodName(), and x_GetDefMethodName().

void CAlnMultiWidget::OnSettings (  wxCommandEvent &  event  )

Definition at line 732 of file alnmulti_widget.cpp. References CAlnMultiRenderer::GetColumn(), CAlnMultiRenderer::GetColumnsCount(), CAlnMultiModel::GetDisplayStyle(), CAlnMultiPane::GetRenderer(), m_AlignPane, CWidgetDisplayStyle::m_Columns, m_Model, and x_UpdateStyleColumns().

void CAlnMultiWidget::OnShowAll (  wxCommandEvent &  event  )

hide rows that are not selected Definition at line 689 of file alnmulti_widget.cpp. References m_Model, CAlnMultiModel::ShowAll(), x_AdjustVisible(), x_RedrawControls(), and CGlWidgetBase::x_UpdateScrollbars().

void CAlnMultiWidget::OnShowMethodDlg (  wxCommandEvent &  event  )

Definition at line 1052 of file alnmulti_widget.cpp. References _ASSERT, CScoringMethodsDlg::Create(), IAlnExplorer::fInvalid, IAlnMultiDataSource::GetAlignType(), CScoringMethodsDlg::GetSelectedMethod(), m_DataSource, CScoringMethodsDlg::Setup(), ToStdString(), x_GetCurrentMethodName(), and x_SetScoringMethod().

void CAlnMultiWidget::OnShowOnlySelected (  wxCommandEvent &  event  )

hide selected rows Definition at line 680 of file alnmulti_widget.cpp. References CAlnMultiModel::GetSelectedRows(), m_Model, and SetVisible().

void CAlnMultiWidget::OnUnMarkAll (  wxCommandEvent &  event  )

Definition at line 662 of file alnmulti_widget.cpp. References m_AlignPane, and CAlnMultiPane::UnMarkAll().

void CAlnMultiWidget::OnUnMarkSelected (  wxCommandEvent &  event  )

mark selected regions of selected rows Definition at line 643 of file alnmulti_widget.cpp. References CAlnMultiPane::GetSelection(), m_AlignPane, and CAlnMultiPane::MarkSelectedRows().

void CAlnMultiWidget::OnUnsetMaster (  wxCommandEvent &  event  )

Definition at line 547 of file alnmulti_widget.cpp. References x_UpdateOnSwitchMaster().

void CAlnMultiWidget::OnUpdateDisableScoring (  wxUpdateUIEvent &  event  )

Definition at line 1116 of file alnmulti_widget.cpp. References CAlnMultiModel::GetCurrentMethod(), and m_Model.

void CAlnMultiWidget::OnUpdateMakeConsensusRowMaster (  wxUpdateUIEvent &  event  )

Definition at line 540 of file alnmulti_widget.cpp. References CAlnMultiModel::CanChangeMasterRow(), and m_Model.

void CAlnMultiWidget::OnUpdateMakeSelectedRowMaster (  wxUpdateUIEvent &  event  )

Definition at line 525 of file alnmulti_widget.cpp. References CAlnMultiModel::CanChangeMasterRow(), and m_Model.

void CAlnMultiWidget::OnUpdateMarkSelected (  wxUpdateUIEvent &  event  )

unmark selected regions of selected rows Definition at line 652 of file alnmulti_widget.cpp. References CAlnMultiPane::GetSelection(), m_AlignPane, m_Model, CRangeCollection< Position >::size(), and CSelListModelImpl< Item >::SLM_GetSelectedCount().

void CAlnMultiWidget::OnUpdateMethodProperties (  wxUpdateUIEvent &  event  )

Definition at line 1099 of file alnmulti_widget.cpp. References CAlnMultiModel::GetCurrentMethod(), IUIToolWithGUI::HasPropertiesPanel(), and m_Model.

void CAlnMultiWidget::OnUpdateScoringMethod (  wxUpdateUIEvent &  event  )

Definition at line 1196 of file alnmulti_widget.cpp. References m_CmdToName, and x_GetCurrentMethodName().

void CAlnMultiWidget::OnUpdateSettings (  wxUpdateUIEvent &  event  )

Definition at line 761 of file alnmulti_widget.cpp.

void CAlnMultiWidget::OnUpdateShowMethodDlg (  wxUpdateUIEvent &  event  )

Definition at line 1072 of file alnmulti_widget.cpp. References IAlnExplorer::fInvalid, IAlnMultiDataSource::GetAlignType(), GetDataSource(), and m_DataSource.

void CAlnMultiWidget::OnUpdateUnsetMaster (  wxUpdateUIEvent &  event  )

Definition at line 553 of file alnmulti_widget.cpp. References CAlnMultiModel::CanChangeMasterRow(), CAlnMultiModel::GetMasterRow(), and m_Model.

void CAlnMultiWidget::OnUpdateZoomSelection (  wxUpdateUIEvent &  event  )

Definition at line 461 of file alnmulti_widget.cpp. References CAlnMultiPane::GetSelectionLimits(), m_AlignPane, and COpenRange< Position >::NotEmpty().

void CAlnMultiWidget::OnZoomSelection (  wxCommandEvent &  event  )

Definition at line 451 of file alnmulti_widget.cpp. References COpenRange< Position >::GetFrom(), CAlnMultiPane::GetSelectionLimits(), COpenRange< Position >::GetTo(), m_AlignPane, COpenRange< Position >::NotEmpty(), and x_ZoomToRange().

void CAlnMultiWidget::OnZoomSequence (  wxCommandEvent &  event  )

Definition at line 443 of file alnmulti_widget.cpp. References IGlFont::eMetric_MaxCharWidth, GetDisplayStyle(), CGlBitmapFont::GetMetric(), GetPort(), CWidgetDisplayStyle::m_SeqFont, CGlPane::SetScale(), and x_UpdateOnZoom().

void CAlnMultiWidget::Print (  const string &  filename  )

Scroll callbacks. Definition at line 1275 of file alnmulti_widget.cpp.

void CAlnMultiWidget::RegisterCommands (  CUICommandRegistry &  cmd_reg, wxFileArtProvider &  provider )  [static]

class CAlnMultiWidget Definition at line 69 of file alnmulti_widget.cpp. References eCmdHideSelected, eCmdMarkSelected, eCmdMoveSelectedUp, eCmdRebuildAlignment, eCmdSetSelMaster, eCmdShowAll, eCmdShowOnlySelected, eCmdUnMarkAll, eCmdUnMarkSelected, eCmdUnsetMaster, CUICommandRegistry::RegisterCommand(), and WidgetsData_RegisterCommands(). Referenced by CAlignMultipleDemoDlg::CreateControls(), and CMultiAlignViewFactory::RegisterCommands().

void CAlnMultiWidget::SaveSettings (   )  const [virtual]

Reimplemented from CGlWidgetBase. Definition at line 260 of file alnmulti_widget.cpp. References IAlnMultiDataSource::GetAlignType(), CAlnMultiModel::GetDisplayStyle(), CGuiRegistry::GetInstance(), CGuiRegistry::GetReadWriteView(), m_DataSource, m_Model, CGlWidgetBase::m_RegPath, and CWidgetDisplayStyle::SaveSettings(). Referenced by OnColumnsChanged(), OnSetAsDefaultMethod(), CMultiAlignView::SaveSettings(), and x_SetScoringMethod().

void CAlnMultiWidget::Scroll (  TModelUnit  d_x, TModelUnit  d_y )  [virtual]

Implements IAlnMultiPaneParent. Definition at line 362 of file alnmulti_widget.cpp. References GetPort(), CGlPane::Scroll(), and x_UpdateOnZoom().

void CAlnMultiWidget::Select (  const vector< TNumrow > &  rows, bool  b_select, bool  b_invert_others = false )  [virtual]

Definition at line 214 of file alnmulti_widget.cpp. References CAlnMultiModel::GetLineByRowNum(), m_Model, CSelListModelImpl< Item >::SLM_SelectItems(), and x_RedrawControls().

void CAlnMultiWidget::SetDataSource (  IAlnMultiDataSource *  p_ds  )  [virtual]

Definition at line 290 of file alnmulti_widget.cpp. References _ASSERT, CAlnMultiModel::GetDefaultMethod(), IAlnMultiDataSource::IsEmpty(), m_DataSource, m_Model, CAlnMultiModel::SetDataSource(), and x_SetScoringMethod(). Referenced by CAlignMultipleDemoDlg::CreateControls(), OnDSChanged(), CAlignMultipleDemoDlg::OnFileClick(), CMultiAlignView::OnProjectChanged(), and CAlignMultipleDemoDlg::OnRebuild().

void CAlnMultiWidget::SetScaleX (  TModelUnit  scale_x, const TModelPoint &  point )  [virtual]

Implements IAlnMultiPaneParent. Definition at line 341 of file alnmulti_widget.cpp. References GetPort(), CGlPane::SetScaleRefPoint(), and x_UpdateOnZoom().

void CAlnMultiWidget::SetSelectedIds (  const TRSeqIdVector &  ids, objects::CScope &  scope )

void CAlnMultiWidget::SetSelection (  const TRangeColl &  coll  )

Definition at line 628 of file alnmulti_widget.cpp. References m_AlignPane, and CAlnMultiPane::SetSelection(). Referenced by CMultiAlignView::x_OnSetSelection().

void CAlnMultiWidget::SetStyleCatalog (  const CRowStyleCatalog *  catalog  )  [virtual]

Definition at line 235 of file alnmulti_widget.cpp. References _ASSERT, m_Model, and CAlnMultiModel::SetStyleCatalog(). Referenced by CAlignMultipleDemoDlg::CreateControls(), and CMultiAlignView::CreateViewWindow().

void CAlnMultiWidget::SetVisible (  const vector< TNumrow > &  rows, bool  b_visible, bool  b_invert_others = false )  [virtual]

makes specified rows visible/hidden, other rows aren't affected Definition at line 203 of file alnmulti_widget.cpp. References m_Model, CAlnMultiModel::SetVisible(), x_AdjustVisible(), x_RedrawControls(), and CGlWidgetBase::x_UpdateScrollbars(). Referenced by OnHideSelected(), and OnShowOnlySelected().

void CAlnMultiWidget::UpdateOnScoringChanged (   )  [virtual]

Definition at line 776 of file alnmulti_widget.cpp. References m_AlignPane, CAlnMultiPane::Update(), and x_RedrawControls(). Referenced by OnMethodProperties(), and x_SetScoringMethod().

void CAlnMultiWidget::UpdateSortOrder (   )  [virtual]

Definition at line 767 of file alnmulti_widget.cpp. References m_AlignPane, m_Model, CAlnMultiPane::UpdateHeaderSortState(), CAlnMultiModel::UpdateSortOrder(), and x_RedrawControls().

void CAlnMultiWidget::UpdateView (   )

Definition at line 806 of file alnmulti_widget.cpp. References m_AlignPane, CAlnMultiPane::Update(), and x_UpdateOnStylesChanged().

void CAlnMultiWidget::x_AdjustVisible (  bool  b_reset  )  [protected, virtual]

Definition at line 927 of file alnmulti_widget.cpp. References CGlPane::AdjustToLimits(), CAlnMultiPane::GetAlignVPHeight(), CGlPane::GetModelLimitsRect(), GetPort(), CGlPane::GetVisibleRect(), m_AlignPane, CGlRect< T >::SetBottom(), CGlRect< T >::SetTop(), CGlPane::SetVisibleRect(), and CGlRect< T >::Top(). Referenced by OnShowAll(), SetVisible(), x_OnResize(), x_UpdateOnDataChanged(), x_UpdateOnRowHChanged(), and x_UpdateOnSwitchMaster().

CAlnMultiModel * CAlnMultiWidget::x_CreateModel (   )  [protected, virtual]

factory method creating and initializing a default model Definition at line 130 of file alnmulti_widget.cpp. Referenced by CreateWidget().

void CAlnMultiWidget::x_CreatePane (  void   )  [protected, virtual]

factory method creating master pane, called form x_CreateControls() Implements CGlWidgetBase. Definition at line 813 of file alnmulti_widget.cpp. References m_AlignPane, m_Model, CAlnMultiPane::SetContext(), CAlnMultiPane::SetWidget(), and CSelListModelImpl< Item >::SLM_AddSLView().

static wxMenu * CAlnMultiWidget::x_CreatePopupMenu (   )  [protected, virtual]

add Scoring Methods menu Definition at line 1320 of file alnmulti_widget.cpp. References _T, CUICommandRegistry::CreateMenu(), FindSubItem(), IAlnExplorer::fInvalid, CUIToolRegistry::GetInstance(), CUICommandRegistry::GetInstance(), CUIToolRegistry::GetMRUToolNames(), and CUIToolRegistry::MRUListExists(). Referenced by OnContextMenu().

void CAlnMultiWidget::x_CreateScoringMethodsMenu (  wxMenu &  color_menu  )  [protected, virtual]

Definition at line 1389 of file alnmulti_widget.cpp. References _ASSERT, CreateMenu(), CAlnMultiModel::GetCurrentMethod(), CMenuItem::GetLabel(), IUIToolWithGUI::GetMenu(), m_Model, and ToWxString().

string CAlnMultiWidget::x_GetCurrentMethodName (   )  const [protected, virtual]

Definition at line 1124 of file alnmulti_widget.cpp. References _ASSERT, CAlnMultiModel::GetCurrentMethod(), IUITool::GetName(), and m_Model. Referenced by OnSetAsDefaultMethod(), OnShowMethodDlg(), OnUpdateScoringMethod(), and x_SetScoringMethod().

string * CAlnMultiWidget::x_GetDefMethodName (   )  [protected, virtual]

Definition at line 1221 of file alnmulti_widget.cpp. References _ASSERT, IAlnExplorer::fDNA, IAlnExplorer::fProtein, IAlnMultiDataSource::GetAlignType(), CAlnMultiModel::GetDisplayStyle(), m_DataSource, CWidgetDisplayStyle::m_DefDNAMethod, CWidgetDisplayStyle::m_DefProteinMethod, and m_Model. Referenced by OnSetAsDefaultMethod().

CGlWidgetPane * CAlnMultiWidget::x_GetPane (   )  [virtual]

Reimplemented from CGlWidgetBase. Definition at line 284 of file alnmulti_widget.cpp. References m_AlignPane.

string CAlnMultiWidget::x_GetScoringMRUListName (   )  [protected, virtual]

Definition at line 1240 of file alnmulti_widget.cpp. References IScoringMethod::GetAlignmentTagByType(), IAlnMultiDataSource::GetAlignType(), and m_DataSource. Referenced by x_SetScoringMethod().

void CAlnMultiWidget::x_MakeVisibleHorz (  TSeqPos  from, TSeqPos  to )  [protected]

Definition at line 485 of file alnmulti_widget.cpp. References GetPort(), CGlPane::GetVisibleRect(), CGlRect< T >::Left(), CGlRect< T >::Right(), CGlPane::Scroll(), and x_UpdateOnZoom().

void CAlnMultiWidget::x_MakeVisibleHorz (  TSeqPos  pos  )  [protected]

Definition at line 479 of file alnmulti_widget.cpp.

void CAlnMultiWidget::x_OnResize (  void   )  [protected, virtual]

Definition at line 881 of file alnmulti_widget.cpp. References CAlnMultiPane::GetAlignVPHeight(), CAlnMultiPane::GetAlignVPWidth(), GetPort(), m_AlignPane, CGlRect< T >::SetSize(), CGlPane::SetViewport(), x_AdjustVisible(), and CGlWidgetBase::x_UpdateScrollbars(). Referenced by OnChildResize().

void CAlnMultiWidget::x_RedrawControls (  void   )  [protected, virtual]

Reimplemented from CGlWidgetBase. Definition at line 894 of file alnmulti_widget.cpp. References m_AlignPane. Referenced by OnMoveSelectedUp(), OnShowAll(), Select(), SetVisible(), UpdateOnScoringChanged(), UpdateSortOrder(), x_UpdateOnRowHChanged(), x_UpdateOnSwitchMaster(), and x_UpdateOnZoom().

virtual void CAlnMultiWidget::x_SetPortLimits (  void   )  [inline, virtual]

updates model limits of the Master CGlPane Implements CGlWidgetBase. Definition at line 117 of file alnmulti_widget.hpp.

void CAlnMultiWidget::x_SetScoringMethod (  const string &  method_name, bool  save )  [protected, virtual]

Definition at line 1137 of file alnmulti_widget.cpp. References _ASSERT, CAlnMultiModel::AddScoringMethod(), CUIToolRegistry::AddToolToMRU(), CUIToolRegistry::CreateMRUList(), CUIToolRegistry::CreateToolInstance(), eDialog_Ok, eIcon_Exclamation, CUIToolRegistry::GetInstance(), CRef< Interface, Locker >::GetPointer(), m_Model, CUIToolRegistry::MRUListExists(), NcbiMessageBox(), CAlnMultiModel::ResetCurrentMethod(), SaveSettings(), CAlnMultiModel::SetCurrentMethod(), CAlnMultiModel::SetDefaultMethod(), UpdateOnScoringChanged(), x_GetCurrentMethodName(), and x_GetScoringMRUListName(). Referenced by OnDisableScoring(), OnScoringMethod(), OnShowMethodDlg(), and SetDataSource().

void CAlnMultiWidget::x_UpdateOnDataChanged (  bool  b_reset = true  )  [protected, virtual]

Update handlers. Definition at line 902 of file alnmulti_widget.cpp. References GetDataSource(), IAlnMultiDataSource::GetNumRows(), CAlnMultiModel::GetRow(), IAlnMultiDataSource::IsEmpty(), m_AlignPane, m_Model, IAlignRow::SetHost(), and x_AdjustVisible().

void CAlnMultiWidget::x_UpdateOnRowHChanged (  void   )  [protected, virtual]

Definition at line 944 of file alnmulti_widget.cpp. References m_Model, CAlnMultiModel::UpdateOnRowHChanged(), x_AdjustVisible(), x_RedrawControls(), and CGlWidgetBase::x_UpdateScrollbars(). Referenced by OnRowChanged(), and x_UpdateOnStylesChanged().

void CAlnMultiWidget::x_UpdateOnStylesChanged (  void   )  [protected, virtual]

Definition at line 1035 of file alnmulti_widget.cpp. References color, CWidgetDisplayStyle::eBack, CWidgetDisplayStyle::GetColor(), CAlnMultiModel::GetDisplayStyle(), CAlnMultiPane::GetRenderer(), m_AlignPane, m_Model, CAlnMultiPane::SetBackColor(), CAlnMultiRenderer::SetColumnsByStyle(), CAlnMultiModel::UpdateOnStyleChanged(), and x_UpdateOnRowHChanged(). Referenced by LoadSettings(), and UpdateView().

void CAlnMultiWidget::x_UpdateOnSwitchMaster (  TNumrow  NewMasterRow  )  [protected, virtual]

Definition at line 958 of file alnmulti_widget.cpp. References CGlRect< T >::Bottom(), CRangeCollection< Position >::CombineWith(), CEventHandler::eDispatch_Default, IAlnExplorer::eLeft, CAlnMultiPane::eLinearSelChanged, CEventHandler::ePool_Parent, IAlnExplorer::eRight, IAlnMultiDataSource::GetAlnPosFromSeqPos(), IAlnMultiDataSource::GetAnchor(), GetDataSource(), GetPort(), CAlnMultiPane::GetSelection(), IAlnMultiDataSource::GetSeqPosFromAlnPos(), CGlPane::GetVisibleRect(), ITERATE, CGlRect< T >::Left(), m_AlignPane, m_Model, CGlRect< T >::Right(), CEventHandler::Send(), CAlnMultiModel::SetMasterRow(), CAlnMultiPane::SetSelection(), CGlPane::SetVisibleRect(), CGlRect< T >::Top(), CAlnMultiPane::Update(), x_AdjustVisible(), x_RedrawControls(), and CGlWidgetBase::x_UpdateScrollbars(). Referenced by OnMakeConsensusRowMaster(), OnMakeSelectedRowMaster(), and OnUnsetMaster().

void CAlnMultiWidget::x_UpdateOnZoom (  void   )  [protected, virtual]

Reimplemented from CGlWidgetBase. Definition at line 1027 of file alnmulti_widget.cpp. References m_AlignPane, CAlnMultiPane::Update(), x_RedrawControls(), and CGlWidgetBase::x_UpdateScrollbars(). Referenced by OnZoomSequence(), Scroll(), SetScaleX(), x_MakeVisibleHorz(), and x_ZoomToRange().

void CAlnMultiWidget::x_UpdateStyleColumns (   )  [protected, virtual]

Definition at line 713 of file alnmulti_widget.cpp. References CAlnMultiRenderer::GetColumn(), CAlnMultiRenderer::GetColumnsCount(), CAlnMultiModel::GetDisplayStyle(), CAlnMultiPane::GetRenderer(), m_AlignPane, CWidgetDisplayStyle::m_Columns, and m_Model. Referenced by OnColumnsChanged(), and OnSettings().

void CAlnMultiWidget::x_ZoomToRange (  TSeqPos  from, TSeqPos  to )  [protected]

Definition at line 468 of file alnmulti_widget.cpp. References GetPort(), CGlPane::GetVisibleRect(), CGlRect< T >::SetLeft(), CGlRect< T >::SetRight(), x_UpdateOnZoom(), and CGlPane::ZoomRect(). Referenced by OnZoomSelection(), and ZoomRect().

void CAlnMultiWidget::ZoomPoint (  const TModelPoint &  point, TModelUnit  factor )  [virtual]

Implements IAlnMultiPaneParent. Definition at line 356 of file alnmulti_widget.cpp. References GetPort(), and CGlPane::ZoomPoint().

void CAlnMultiWidget::ZoomRect (  const TModelRect &  rc  )  [virtual]

Implements IAlnMultiPaneParent. Definition at line 348 of file alnmulti_widget.cpp. References CGlRect< T >::Left(), CGlRect< T >::Right(), and x_ZoomToRange().

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Member Data Documentation

CAlnMultiPane* CAlnMultiWidget::m_AlignPane [protected]

representation of alignment data Definition at line 294 of file alnmulti_widget.hpp. Referenced by CreateWidget(), GetMarks(), GetSelection(), IsRendererFocused(), OnContextMenu(), OnDSChanged(), OnMarkSelected(), OnResetSelection(), OnScoringFinished(), OnScoringProgress(), OnSettings(), OnUnMarkAll(), OnUnMarkSelected(), OnUpdateMarkSelected(), OnUpdateZoomSelection(), OnZoomSelection(), SetSelection(), UpdateOnScoringChanged(), UpdateSortOrder(), UpdateView(), x_AdjustVisible(), x_CreatePane(), x_GetPane(), x_OnResize(), x_RedrawControls(), x_UpdateOnDataChanged(), x_UpdateOnStylesChanged(), x_UpdateOnSwitchMaster(), x_UpdateOnZoom(), x_UpdateStyleColumns(), and ~CAlnMultiWidget().

TCmdToName CAlnMultiWidget::m_CmdToName [protected]

widget rendering data and handling events Definition at line 296 of file alnmulti_widget.hpp. Referenced by OnScoringMethod(), and OnUpdateScoringMethod().

IAlnMultiDataSource* CAlnMultiWidget::m_DataSource [protected]

Definition at line 290 of file alnmulti_widget.hpp. Referenced by GetDataSource(), OnDSChanged(), OnShowMethodDlg(), OnUpdateShowMethodDlg(), SaveSettings(), SetDataSource(), x_GetDefMethodName(), and x_GetScoringMRUListName().

CAlnMultiModel* CAlnMultiWidget::m_Model [protected]

source of alignment data Definition at line 292 of file alnmulti_widget.hpp. Referenced by CreateWidget(), GetDisplayStyle(), GetLineByRowNum(), GetModel(), GetPort(), GetRowNumByLine(), LoadSettings(), OnHideSelected(), OnMakeSelectedRowMaster(), OnMethodProperties(), OnMoveSelectedUp(), OnSettings(), OnShowAll(), OnShowOnlySelected(), OnUpdateDisableScoring(), OnUpdateMakeConsensusRowMaster(), OnUpdateMakeSelectedRowMaster(), OnUpdateMarkSelected(), OnUpdateMethodProperties(), OnUpdateUnsetMaster(), SaveSettings(), Select(), SetDataSource(), SetStyleCatalog(), SetVisible(), UpdateSortOrder(), x_CreatePane(), x_CreateScoringMethodsMenu(), x_GetCurrentMethodName(), x_GetDefMethodName(), x_SetScoringMethod(), x_UpdateOnDataChanged(), x_UpdateOnRowHChanged(), x_UpdateOnStylesChanged(), x_UpdateOnSwitchMaster(), x_UpdateStyleColumns(), and ~CAlnMultiWidget().

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The documentation for this class was generated from the following files:

• include/gui/widgets/aln_multiple/alnmulti_widget.hpp
• src/gui/widgets/aln_multiple/alnmulti_widget.cpp

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