include/objects/seqalign/Seq_align.hpp File Reference

#include <objects/seqalign/Seq_align_.hpp>
#include <objects/seqloc/Na_strand.hpp>
#include <util/range.hpp>

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Classes
class	CSeq_align
struct	CSeq_align::SSeqIdChooser
	NOTE: Here we assume that the same rows on different segments contain the same sequence. More...
Functions
CRef< CSeq_align >	RemapAlignToLoc (const CSeq_align &align, CSeq_align::TDim row, const CSeq_loc &loc)
	Remap seq-align row to the seq-loc.

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Function Documentation

CRef<CSeq_align> RemapAlignToLoc (  const CSeq_align &  align, CSeq_align::TDim  row, const CSeq_loc &  loc )

Remap seq-align row to the seq-loc. Treats the given row as being relative to the location, maps it to the sequence(s) referenced by this location. Parameters: align  The seq-align object to be mapped (the object will be modified!). row  Row to be mapped. loc  Seq-loc to which the row should be mapped. Returns: Reference to the new seq-align with the mapped row. Definition at line 1083 of file Seq_align.cpp. Referenced by s_RemapToSubjectLoc().

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