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HomoloGene:2310. Gene conserved in Bilateria Download , Links
Genes
Genes identified as putative homologs of one another during the construction of HomoloGene.

Proteins
Proteins used in sequence comparisons and their conserved domain architectures.

   SMARCB1,  H.sapiens
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1
    NP_003064.2
385 aa
   SMARCB1,  P.troglodytes
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1
    XP_001169712.1
385 aa
   SMARCB1,  M.mulatta
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1
    XP_001084732.1
385 aa
   SMARCB1,  C.lupus
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1
    XP_857270.2
385 aa
   SMARCB1,  B.taurus
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1
    NP_001035647.1
385 aa
   Smarcb1,  M.musculus
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1
    NP_035548.1
385 aa
   Smarcb1,  R.norvegicus
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1
    NP_001020899.1
376 aa
   MMP11,  G.gallus
matrix metallopeptidase 11 (stromelysin 3)
    NP_001034344.1
386 aa
   smarcb1,  X.tropicalis
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1
    NP_001006819.1
378 aa
   smarcb1a,  D.rerio
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1a
    NP_001007297.1
373 aa
   Snr1,  D.melanogaster
Snf5-related 1
    NP_730935.1
370 aa
   AgaP_AGAP001154,  A.gambiae
AgaP_AGAP001154
    XP_322006.1
369 aa
   snfc-5,  C.elegans
snfc-5
    NP_497890.1
381 aa


Protein Alignments
Protein multiple alignment, pairwise similarity scores and evolutionary distances.

Show Multiple Alignment

Show Pairwise Alignment Scores

Pairwise alignments generated using BLAST
Regenerate Alignments




Phenotypes
Phenotypic information for the genes in this entry imported from model organism databases.

H.sapiens
Rhabdoid predisposition syndrome, familial.
Rhabdoid tumors.



Publications
Articles associated with genes and sequences of this homology group.




Conserved Domains
Conserved Domains from CDD found in protein sequences by rpsblast searching.
SNF5 (pfam04855)
  SNF5 / SMARCB1 / INI1.
SNF5 (pfam04855)
  SNF5 / SMARCB1 / INI1.



Related Homology Resources
Links to curated and computed homology information found in other databases.
Orthology group for M.musculus Smarcb1 includes H.sapiens SMARCB1 and R.norvegicus Smarcb1.



UniGene
Links to UniGene entries found by comparing the homologous proteins against the transcript database.

Chordata
Actinopterygii - bony fishes (19 transcripts, 10 species)
Mammalia - mammals (11 transcripts, 11 species)
Ascidiacea - tunicates (3 transcripts, 2 species)
Amphibia - amphibians (3 transcripts, 2 species)
Cephalochordata - lancelets (1 transcript, 1 species)
Hyperoartia - vertebrates (1 transcript, 1 species)

Arthropoda
Insecta - insects (11 transcripts, 11 species)
Arachnida - arachnids (2 transcripts, 2 species)
Branchiopoda - crustaceans (1 transcript, 1 species)
Malacostraca - crustaceans (1 transcript, 1 species)

Cnidaria
Hydrozoa - hydrozoans (2 transcripts, 2 species)
Anthozoa - anthozoans (1 transcript, 1 species)

Nematoda
Chromadorea - nematodes (3 transcripts, 2 species)

Annelida
Polychaeta - segmented worms (1 transcript, 1 species)
Hirudinida - segmented worms (1 transcript, 1 species)

Echinodermata
Echinoidea - sea urchins (2 transcripts, 2 species)

Mollusca
Gastropoda - gastropods (1 transcript, 1 species)

Platyhelminthes
Turbellaria - flatworms (1 transcript, 1 species)

 

 

 

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