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HomoloGene:11844. Gene conserved in Euteleostomi Download , Links
Genes
Genes identified as putative homologs of one another during the construction of HomoloGene.

Proteins
Proteins used in sequence comparisons and their conserved domain architectures.

   CHD9,  H.sapiens
chromodomain helicase DNA binding protein 9
    NP_079410.4
2881 aa
   CHD9,  P.troglodytes
chromodomain helicase DNA binding protein 9
    XP_003952892.1
2882 aa
   LOC696367,  M.mulatta
chromodomain-helicase-DNA-binding protein 9-like
    XP_002808345.1
2901 aa
   CHD9,  C.lupus
chromodomain helicase DNA binding protein 9
    XP_005617617.1
2903 aa
   CHD9,  B.taurus
chromodomain helicase DNA binding protein 9
    NP_001192579.1
2883 aa
   Chd9,  M.musculus
chromodomain helicase DNA binding protein 9
    NP_796198.1
2869 aa
   Chd9,  R.norvegicus
chromodomain helicase DNA binding protein 9
    XP_006255271.1
2830 aa
   CHD9,  G.gallus
chromodomain helicase DNA binding protein 9
    XP_414088.3
2875 aa
   chd9,  D.rerio
chromodomain helicase DNA binding protein 9
    XP_005169071.1
2947 aa


Protein Alignments
Protein multiple alignment, pairwise similarity scores and evolutionary distances.

Show Multiple Alignment

Show Pairwise Alignment Scores

Pairwise alignments generated using BLAST
Regenerate Alignments




Publications
Articles associated with genes and sequences of this homology group.

In vivo association of CReMM/CHD9 with promoters in osteogenic cells.
Shur I, et al. J Cell Physiol 207, 374-8 (2006).
PRIC320, a transcription coactivator, isolated from peroxisome proliferator-binding protein complex.
Surapureddi S, et al. Biochem Biophys Res Commun 343, 535-43 (2006).



Conserved Domains
Conserved Domains from CDD found in protein sequences by rpsblast searching.
BRK (pfam07533)
  BRK domain.
SNF2_N (pfam00176)
  SNF2 family N-terminal domain.
PHA00666 (PHA00666)
  putative protease.
COG5048 (COG5048)
  FOG: Zn-finger [General function prediction only].
HELICc (cd00079)
  Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
SNF2_N (pfam00176)
  SNF2 family N-terminal domain.
SRP-alpha_N (pfam04086)
  Signal recognition particle, alpha subunit, N-terminal.
DUF863 (pfam05904)
  Plant protein of unknown function (DUF863).
DUF1421 (pfam07223)
  Protein of unknown function (DUF1421).
PAP1 (pfam08601)
  Transcription factor PAP1.
BRK (cl02688)
  BRK domain.
DEXDc (cl17251)
  DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
CHROMO (cl17459)
  Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.



Related Homology Resources
Links to curated and computed homology information found in other databases.
Orthology group for M.musculus Chd9 includes H.sapiens CHD9.



UniGene
Links to UniGene entries found by comparing the homologous proteins against the transcript database.

Chordata
Mammalia - mammals (29 transcripts, 13 species)
Actinopterygii - bony fishes (4 transcripts, 4 species)
Aves - birds (4 transcripts, 2 species)
Amniota - vertebrates (2 transcripts, 1 species)
Amphibia - amphibians (1 transcript, 1 species)

 

 

 

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