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HomoloGene:48376. Gene conserved in Eukaryota Download , Links
Genes
Genes identified as putative homologs of one another during the construction of HomoloGene.

Proteins
Proteins used in sequence comparisons and their conserved domain architectures.

   DDX39B,  H.sapiens
DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
    NP_004631.1
428 aa
   DDX39B,  P.troglodytes
DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
    NP_001107635.1
428 aa
   DDX39B,  M.mulatta
DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
    NP_001040608.1
428 aa
   DDX39B,  C.lupus
DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
    NP_001014399.1
428 aa
   DDX39B,  B.taurus
DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
    NP_001028801.1
428 aa
   Ddx39b,  M.musculus
DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
    NP_001239386.1
428 aa
   Ddx39b,  R.norvegicus
DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
    NP_579834.2
428 aa
   ddx39b,  X.tropicalis
DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
    NP_989072.1
428 aa
   bat1,  D.rerio
HLA-B associated transcript 1
    NP_957237.1
435 aa
   Hel25E,  D.melanogaster
Helicase at 25E
    NP_723089.1
424 aa
   AgaP_AGAP009075,  A.gambiae
AgaP_AGAP009075
    XP_319825.4
319 aa
   SUB2,  S.cerevisiae
SUB2
    NP_010199.1
446 aa
   KLLA0E21935g,  K.lactis
KLLA0E21935g
    XP_454944.1
437 aa
   AGOS_ADR260C,  E.gossypii
AGOS_ADR260C
    NP_984356.1
438 aa
   uap56,  S.pombe
uap56
    NP_594261.1
434 aa
   MGG_02806,  M.oryzae
MGG_02806
    XP_003720935.1
436 aa
   NCU09076,  N.crassa
NCU09076
    XP_964893.2
434 aa
   AT5G11170,  A.thaliana
AT5G11170
    NP_568244.2
427 aa
   Os01g0549700,  O.sativa
Os01g0549700
    NP_001043297.1
495 aa
   Os01g0550000,  O.sativa
Os01g0550000
    NP_001043298.1
432 aa


Protein Alignments
Protein multiple alignment, pairwise similarity scores and evolutionary distances.

Show Multiple Alignment

Show Pairwise Alignment Scores

Pairwise alignments generated using BLAST
Regenerate Alignments




Publications
Articles associated with genes and sequences of this homology group.

UAP56 is an important regulator of protein synthesis and growth in cardiomyocytes.
Sahni A, et al. Biochem Biophys Res Commun 393, 106-10 (2010).
A dual reporter approach to quantify defects in messenger RNA processing.
Banerjee A, et al. Anal Biochem 395, 237-43 (2009).
Binding of ATP to UAP56 is necessary for mRNA export.
Kota KP, et al. J Cell Sci 121, 1526-37 (2008).



Conserved Domains
Conserved Domains from CDD found in protein sequences by rpsblast searching.
HELICc (cd00079)
  Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
DEXDc (cl17251)
  DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.



Related Homology Resources
Links to curated and computed homology information found in other databases.
Orthology group for M.musculus Ddx39b includes H.sapiens DDX39B.



UniGene
Links to UniGene entries found by comparing the homologous proteins against the transcript database.

Chordata
Mammalia - mammals (17 transcripts, 15 species)
Actinopterygii - bony fishes (10 transcripts, 7 species)
Ascidiacea - tunicates (6 transcripts, 3 species)
Amphibia - amphibians (5 transcripts, 2 species)
Aves - birds (2 transcripts, 2 species)
Cephalochordata - lancelets (2 transcripts, 1 species)
Amniota - vertebrates (1 transcript, 1 species)
Hyperoartia - vertebrates (1 transcript, 1 species)

Arthropoda
Insecta - insects (15 transcripts, 13 species)
Arachnida - arachnids (3 transcripts, 2 species)
Maxillopoda - crustaceans (2 transcripts, 1 species)
Branchiopoda - crustaceans (1 transcript, 1 species)
Malacostraca - crustaceans (1 transcript, 1 species)

Cnidaria
Hydrozoa - hydrozoans (2 transcripts, 2 species)
Anthozoa - anthozoans (2 transcripts, 1 species)

Platyhelminthes
Trematoda - flatworms (4 transcripts, 2 species)

Mollusca
Gastropoda - gastropods (3 transcripts, 2 species)

Annelida
Polychaeta - segmented worms (3 transcripts, 1 species)

Nematoda
Chromadorea - nematodes (1 transcript, 1 species)

Porifera
Demospongiae - sponges (1 transcript, 1 species)

Echinodermata
Echinoidea - sea urchins (1 transcript, 1 species)

Streptophyta
Liliopsida - monocots (16 transcripts, 8 species)
Eudicotyledons - eudicots (4 transcripts, 4 species)

Chlorophyta
Chlorophyceae - green algae (1 transcript, 1 species)

Ascomycota
Sordariomycetes - ascomycetes (6 transcripts, 3 species)
Eurotiomycetes - ascomycetes (1 transcript, 1 species)
Pezizomycetes - ascomycetes (1 transcript, 1 species)

Basidiomycota
Heterobasidiomycetes - basidiomycetes (1 transcript, 1 species)

Bacillariophyta
Bacillariophyceae - diatoms (1 transcript, 1 species)

Oomycetes
Peronosporales - oomycetes (1 transcript, 1 species)

Ciliophora
Oligohymenophorea - ciliates (1 transcript, 1 species)

Codonosigidae
Monosiga - choanoflagellates (1 transcript, 1 species)

 

 

 

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