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HomoloGene:3499. Gene conserved in Eukaryota Download , Links
Genes
Genes identified as putative homologs of one another during the construction of HomoloGene.

Proteins
Proteins used in sequence comparisons and their conserved domain architectures.

   COPB2,  H.sapiens
coatomer protein complex, subunit beta 2 (beta prime)
    NP_004757.1
906 aa
   COPB2,  P.troglodytes
coatomer protein complex, subunit beta 2 (beta prime)
    XP_003310064.1
906 aa
   COPB2,  C.lupus
coatomer protein complex, subunit beta 2 (beta prime)
    XP_005634562.1
906 aa
   COPB2,  B.taurus
coatomer protein complex, subunit beta 2 (beta prime)
    NP_776706.2
906 aa
   Copb2,  M.musculus
coatomer protein complex, subunit beta 2 (beta prime)
    NP_056642.1
905 aa
   Copb2,  R.norvegicus
coatomer protein complex, subunit beta 2 (beta prime)
    NP_068533.1
905 aa
   COPB2,  G.gallus
coatomer protein complex, subunit beta 2 (beta prime)
    XP_422637.2
913 aa
   copb2,  X.tropicalis
coatomer protein complex, subunit beta 2 (beta prime)
    NP_001027518.1
920 aa
   copb2,  D.rerio
coatomer protein complex, subunit beta 2
    NP_001001940.1
934 aa
   beta'Cop,  D.melanogaster
beta'-coatomer protein
    NP_524836.2
914 aa
   AgaP_AGAP004798,  A.gambiae
AgaP_AGAP004798
    XP_318012.4
952 aa
   CELE_F38E11.5,  C.elegans
CELE_F38E11.5
    NP_501671.1
1000 aa
   SEC27,  S.cerevisiae
SEC27
    NP_011378.1
889 aa
   KLLA0B01958g,  K.lactis
KLLA0B01958g
    XP_451618.1
890 aa
   AGOS_AFL118W,  E.gossypii
AGOS_AFL118W
    NP_985432.1
832 aa
   sec27,  S.pombe
sec27
    XP_001713153.1
796 aa
   MGG_10504,  M.oryzae
MGG_10504
    XP_003710112.1
855 aa
   NCU07319,  N.crassa
NCU07319
    XP_962477.1
858 aa
   AT1G52360,  A.thaliana
AT1G52360
    NP_175645.1
926 aa
   AT1G79990,  A.thaliana
AT1G79990
    NP_001154478.1
920 aa
   AT3G15980,  A.thaliana
AT3G15980
    NP_001189907.1
914 aa
   Os06g0143900,  O.sativa
Os06g0143900
    NP_001056779.1
907 aa


Protein Alignments
Protein multiple alignment, pairwise similarity scores and evolutionary distances.

Show Multiple Alignment

Show Pairwise Alignment Scores

Pairwise alignments generated using BLAST
Regenerate Alignments




Publications
Articles associated with genes and sequences of this homology group.

In vitro assembly and disassembly of coatomer.
Lowe M & Kreis TE. J Biol Chem 270, 31364-71 (1995).
beta'-COP, a novel subunit of coatomer.
Stenbeck G, et al. EMBO J 12, 2841-5 (1993).
Peroxisome biogenesis: involvement of ARF and coatomer.
Passreiter M, et al. J Cell Biol 141, 373-83 (1998).



Conserved Domains
Conserved Domains from CDD found in protein sequences by rpsblast searching.
Coatomer_WDAD (pfam04053)
  Coatomer WD associated region.
WD40 (cd00200)
  WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Coatomer_WDAD (pfam04053)
  Coatomer WD associated region.



Related Homology Resources
Links to curated and computed homology information found in other databases.
Orthology group for M.musculus Copb2 includes H.sapiens COPB2 and R.norvegicus Copb2.



UniGene
Links to UniGene entries found by comparing the homologous proteins against the transcript database.

Streptophyta
Eudicotyledons - eudicots (143 transcripts, 35 species)
Liliopsida - monocots (30 transcripts, 9 species)
Coniferopsida - conifers (5 transcripts, 2 species)
Bryopsida - mosses (4 transcripts, 1 species)
Isoetopsida - club-mosses (2 transcripts, 1 species)

Chlorophyta
Chlorophyceae - green algae (2 transcripts, 2 species)

Chordata
Actinopterygii - bony fishes (22 transcripts, 10 species)
Mammalia - mammals (21 transcripts, 17 species)
Aves - birds (3 transcripts, 2 species)
Amphibia - amphibians (3 transcripts, 2 species)
Amniota - vertebrates (2 transcripts, 1 species)
Ascidiacea - tunicates (2 transcripts, 2 species)
Cephalochordata - lancelets (1 transcript, 1 species)
Hyperoartia - vertebrates (1 transcript, 1 species)

Arthropoda
Insecta - insects (10 transcripts, 10 species)
Arachnida - arachnids (2 transcripts, 2 species)
Branchiopoda - crustaceans (1 transcript, 1 species)
Maxillopoda - crustaceans (1 transcript, 1 species)

Nematoda
Chromadorea - nematodes (4 transcripts, 2 species)

Platyhelminthes
Trematoda - flatworms (2 transcripts, 2 species)
Turbellaria - flatworms (1 transcript, 1 species)

Cnidaria
Hydrozoa - hydrozoans (1 transcript, 1 species)
Anthozoa - anthozoans (1 transcript, 1 species)

Annelida
Polychaeta - segmented worms (1 transcript, 1 species)
Hirudinida - segmented worms (1 transcript, 1 species)

Echinodermata
Echinoidea - sea urchins (2 transcripts, 2 species)

Mollusca
Gastropoda - gastropods (1 transcript, 1 species)

Porifera
Demospongiae - sponges (1 transcript, 1 species)

Ascomycota
Sordariomycetes - ascomycetes (4 transcripts, 3 species)
Eurotiomycetes - ascomycetes (1 transcript, 1 species)
Pezizomycetes - ascomycetes (1 transcript, 1 species)

Basidiomycota
Heterobasidiomycetes - basidiomycetes (1 transcript, 1 species)

Oomycetes
Peronosporales - oomycetes (3 transcripts, 1 species)

Bacillariophyta
Bacillariophyceae - diatoms (1 transcript, 1 species)

Apicomplexa
Coccidia - apicomplexans (1 transcript, 1 species)

Ciliophora
Oligohymenophorea - ciliates (1 transcript, 1 species)

Dictyosteliida
Dictyostelium - cellular slime molds (1 transcript, 1 species)

Codonosigidae
Monosiga - choanoflagellates (1 transcript, 1 species)

 

 

 

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