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Sample GSM840782 Query DataSets for GSM840782
Status Public on Dec 01, 2011
Title Illumina_Drinker_123
Sample type genomic
 
Source name genomic DNA from saliva sample
Organism Homo sapiens
Characteristics tissue: saliva
gender: M
age: 30
race: Latino
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from saliva samples according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2
 
Submission date Nov 30, 2011
Last update date Aug 28, 2014
Contact name Jingyu Liu
E-mail(s) jliu@mrn.org
Phone 505-504-8066
Organization name Mind Research Network
Street address 1101 Yale Blvd.
City Albuquerque
State/province NM
ZIP/Postal code 87106
Country USA
 
Platform ID GPL8490
Series (1)
GSE34035 Epigenome analysis of saliva samples from alcohol users

Data table header descriptions
ID_REF
VALUE Average Beta
Detection Pval

Data table
ID_REF VALUE Detection Pval
cg00012386 0.097036 3.68E-38
cg00016968 0.69291 3.68E-38
cg00030047 0.4387 3.68E-38
cg00071250 0.59589 4.72E-15
cg00077457 0.65047 7.98E-11
cg00095526 0.697 3.68E-38
cg00095674 0.20565 3.91E-38
cg00101227 0.80052 6.64E-24
cg00105470 0.21704 2.05E-17
cg00108454 0.49669 3.68E-38
cg00117172 0.087262 3.68E-38
cg00123035 0.41781 2.00E-07
cg00128766 0.33428 0.0011277
cg00128877 0.13598 3.68E-38
cg00136477 0.76935 3.68E-38
cg00143998 0.084632 3.68E-38
cg00152644 0.66905 1.04E-15
cg00160914 0.28614 0.0045019
cg00208830 0.53738 6.76E-07
cg00209951 0.28186 1.56E-08

Total number of rows: 27578

Table truncated, full table size 759 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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