NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM62853 Query DataSets for GSM62853
Status Public on Aug 23, 2005
Title vehicle control 4 days biological replicate 2
Sample type RNA
 
Source name animal 31
Organism Macaca fascicularis
Characteristics male liver
Extracted molecule total RNA
Extraction protocol Approximately 3 grams from the right lateral liver lobe was flash-frozen in liquid nitrogen. Total RNA isolated using TRIzol.
Label biotin
Label protocol Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description liver from animal 31, treated with vehicle only for 4 days
Data processing Affymetrix Microarray Suite version 5.0 given here for convenience. Note that data processing reported in the Toxicological Sciences manuscript was done using Rosetta Resolver and the Rosetta Resolver treated versus control group fold-change and p-value are appended to Series entry.
 
Submission date Jun 30, 2005
Last update date Mar 16, 2009
Contact name Neal F Cariello
E-mail(s) neal.cariello@gmail.com
Phone 919 971 5307
Organization name GlaxoSmithKline
Department Safety Assessment
Lab Investigative Toxicology and Pathology
Street address 5 Moore Drive, Bldg 9, Rom 2011
City Research Triangle Park
State/province NC
ZIP/Postal code 27713
Country USA
 
Platform ID GPL8300
Series (1)
GSE2853 Ciprofibrate (PPAR-alpha agonist) in the monkey liver

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
34639_at 18.3 A 0.861235
40662_g_at 38.1 A 0.138765
1359_at 41 A 0.397994
38244_at 6.9 A 0.660442
38929_at 20.2 A 0.715253
32522_f_at 37.1 A 0.581931
34242_at 18.9 A 0.64131
38784_g_at 57.2 A 0.458816
40603_at 40.2 A 0.284747
35356_at 76.6 P 0.003067
33511_at 8.5 A 0.749276
39703_at 15.7 A 0.267428
36850_at 7.5 A 0.795978
35359_at 503 P 0.006532
36119_at 59.9 P 0.007543
387_at 256.6 A 0.098054
31514_at 258.4 A 0.234557
794_at 26.7 A 0.732537
34984_at 1.4 A 0.996415
708_at 11.7 A 0.94553

Total number of rows: 12625

Table truncated, full table size 309 Kbytes.




Supplementary file Size Download File type/resource
GSM62853.CEL.gz 2.8 Mb (ftp)(http) CEL

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap