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Status |
Public on Oct 09, 2009 |
Title |
Hi-C (HindIII,K562,1) 7 |
Sample type |
SRA |
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Source name |
K562
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Organism |
Homo sapiens |
Characteristics |
cell line: K562 restriction enzyme: HindIII biological sample #: 4 pcr # from biological sample: 1 lane: 1 read end: 1,2
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Growth protocol |
Human cell line GM06990, an EBV-transformed lymphoblastoid cell line (Coriell, Camden, NJ), was cultured in RPMI1640, 15% fetal calf serum, 1% penicillin-streptomycin, and 2mM L-glutamine. Human erythroleukemia cell line K562 (ATCC, Manassas, VA) was cultured in DMEM, 10% fetal calf serum, 1% penicillinstreptomycin, and 2mM L-glutamine.
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Extracted molecule |
genomic DNA |
Extraction protocol |
Hi-C approach as described in the paper
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Library strategy |
OTHER |
Library source |
genomic |
Library selection |
other |
Instrument model |
Illumina Genome Analyzer |
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Description |
contains both read ends
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Data processing |
Independent alignment of both ends of each read using Maq (http://maq.sourceforge.net/)
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Submission date |
Sep 21, 2009 |
Last update date |
May 15, 2019 |
Contact name |
Erez Lieberman-Aiden |
E-mail(s) |
erezl@princeton.edu
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Organization name |
Harvard/MIT/Broad
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Street address |
7 Cambridge Circle
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City |
Cambridge |
State/province |
MA |
ZIP/Postal code |
02139 |
Country |
USA |
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Platform ID |
GPL9052 |
Series (1) |
GSE18199 |
Comprehensive mapping of long-range interactions reveals folding principles of the human genome. |
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Relations |
SRA |
SRX011614 |
BioSample |
SAMN00003929 |
Supplementary file |
Size |
Download |
File type/resource |
GSM455139_428EGAAXX.7.maq.hic.summary.binned.txt.gz |
222.8 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
Processed data provided as supplementary file |
Raw data are available in SRA |
Processed data are available on Series record |
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