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Sample GSM416757 Query DataSets for GSM416757
Status Public on Aug 25, 2009
Title H520
Sample type SRA
 
Source name cell line
Organism Homo sapiens
Characteristics cell line: H520
Growth protocol RNA was harvested from exponentially growing cells
Extracted molecule total RNA
Extraction protocol Total RNA extracted using standard Trizol extraction. Total RNA fractionated on 15% polyacrylamide gel and 3' and 5' adaptors sequentially ligated requiring a 3' hydroxyl group and 5' phosphate
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection size fractionation
Instrument model Illumina Genome Analyzer
 
Description none
Data processing Reads containing linker matches were mapped (after removing linkers) to predicted pre-miRNAs (MirBase version 12.0)
 
Submission date Jun 12, 2009
Last update date May 15, 2019
Contact name Christine Mayr
E-mail(s) mayrc@mskcc.org
Organization name Whitehead Institute
Street address 9 Cambridge Center
City Cambridge
State/province MA
ZIP/Postal code 02142
Country USA
 
Platform ID GPL9052
Series (1)
GSE16579 miRNA expression of human cancer and mouse cell lines
Relations
SRA SRX012259
BioSample SAMN00004412

Data table header descriptions
SEQUENCE
COUNT counts

Data table
SEQUENCE COUNT
AGCGTGTAGGGATCCAAATCGTATGCCGTCTTCTGC 779389
TTAACGCGGCCGCTCTACAATAGTGATCGTATGCCG 192322
GGCATTAACGCGGCCGCTCTACAATAGTGATCGTAT 185355
AGCGTGTAGGGATCCAAATCGTATGCCGTCTTCTGT 179728
CATTAACGCGGCCGCTCTACAATAGTGATCGTATGC 51583
TAGCTTATCAGACTGATGTTGACTCGTATGCCGTCT 45743
TGAGGTAGTAGGTTGTATAGTTTCGTATGCCGTCTT 33319
TAGCTTATCAGACTGATGTTGATCGTATGCCGTCTT 29241
AGCAGCATTGTACAGGGCTATGATCGTATGCCGTCT 26821
GCGTGTAGGGATCCAAATCGTATGCCGTCTTCTGCT 25674
TAGCAGCACGTAAATATTGGCGTCGTATGCCGTCTT 24981
TAGCACCATTTGAAATCAGTGTTTCGTATGCCGTCT 23744
TGGCTCAGTTCAGCAGGAACAGTCGTATGCCGTCTT 23698
TAGCACCATCTGAAATCGGTTATCGTATGCCGTCTT 23262
AGCGTGTAGGGATCCAAATCGTATGCCGTCTTCTTC 16813
TCAGAGAACTATCTTAAGGGCAAGAAATTGTCCTTT 16340
TGAGGTAGTAGATTGTATAGTTTCGTATGCCGTCTT 14698
AGCGTGTAGGGATCCAATCGTATGCCGTCTTCTGCT 14400
GCATTAACGCGGCCGCTCTACAATAGTGATCGTATG 13866
AGCGTGTAGGGATCCAAATCGTATGCCGTCTTTTGT 13115

Total number of rows: 709156

Table truncated, full table size 27032 Kbytes.




Supplementary data files not provided
SRA Run SelectorHelp
Processed data included within Sample table
Raw data are available in SRA

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