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Sample GSM414902 Query DataSets for GSM414902
Status Public on Jul 22, 2009
Title ERaKO whole embryo 1
Sample type RNA
 
Source name ERalpha KO mice whole embryo
Organism Mus musculus
Characteristics strain: C57BL/6
tissue: whole embryo
stage: E18.5
genotype: ER-alpha KO
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from embryo using TRIzol (Invitrogen, Carlsbad, CA) according to manufacturer’s instructions.
Label FAM
Label protocol Standard TaqMan protocol
 
Hybridization protocol n/a
Scan protocol n/a
Description Standard Taqman Assay: Quantitative real-time PCR was performed using Applied Biosystems 7900HT system and universal cycling conditions (10 min. at 95C; 15 sec. at 95C; 1 min. at 60C for 40 cycles).
Data processing Data was processed using SDS 2.3 software (Applied Biosystems, Foster City, CA). Normalized by subtracting mammu6 to get Delta CT
 
Submission date Jun 09, 2009
Last update date Mar 10, 2011
Contact name kaoru yamagata
E-mail(s) ykaoru7@hotmail.com
Organization name university of tokyo
Street address yayoi 1-1-1
City bukyo-ku
State/province Tokyo
ZIP/Postal code 113-0032
Country Japan
 
Platform ID GPL8527
Series (1)
GSE16513 Global survey of miRNA Taqman RT-PCR of whole embryo: wild-type vs. estrogen receptor alpha knockout mice

Data table header descriptions
ID_REF
VALUE Delta Ct value

Data table
ID_REF VALUE
ath-miR159a-4373390
MammU6-4395470
mmu-let-7a-4373169 14.026447
mmu-let-7b-4373168 14.216675
mmu-let-7c-4373167 11.848353
mmu-let-7d-4395394 12.057186
mmu-let-7e-4395517 10.096071
mmu-let-7f-4373164 14.80126
mmu-let-7g-4395393 9.195044
mmu-let-7i-4395332 9.036492
mmu-miR-100-4373160 11.113508
mmu-miR-101a-4395364 12.863403
mmu-miR-103-4373158 13.07312
mmu-miR-105-4395595 22.251352
mmu-miR-106a-4395589 6.60461
mmu-miR-106b-4373155 10.61166
mmu-miR-107-4373154 17.105494
mmu-miR-10a-4373153 12.605229
mmu-miR-10b-4395329 11.303202
mmu-miR-122-4395356 9.011809

Total number of rows: 381

Table truncated, full table size 10 Kbytes.




Supplementary file Size Download File type/resource
GSM414902.txt.gz 3.7 Kb (ftp)(http) TXT
Processed data included within Sample table

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