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Sample GSM400418 Query DataSets for GSM400418
Status Public on May 08, 2009
Title stomach 23
Sample type RNA
 
Source name stomach
Organism Mus musculus
Characteristics tissue: stomach
Treatment protocol RNA extraction from tissues of naïve male (except females for specific organs) C57BL/6J mice, 8-10 weeks of age
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from cell pellets using Trizol (Invitrogen, Carlsbad, CA) followed by clean up using the RNeasy kit (Qiagen, Valencia, CA, USA).
Label biotin
Label protocol 2 ug total RNA was used with the GeneChip WT Sense Target Labeling Kit
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures using GCS3000 scanner
Description stomach
Data processing RMA
 
Submission date May 06, 2009
Last update date May 07, 2009
Contact name John R Walker
E-mail(s) jwalker@gnf.org
Phone 858-812-1636
Organization name Genomics Institute of the Novartis Research Foundation
Lab Genetics Core
Street address 10675 John Jay Hopkins
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL6193
Series (1)
GSE15998 Mouse Exon Atlas

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
4304920 2.691281
4304921 2.123614
4304922 4.70992
4304923 6.148908
4304925 8.367566
4304927 3.15144
4304928 11.901762
4304929 10.010579
4304930 3.504747
4304931 3.092711
4304932 7.461903
4304933 8.84798
4304934 4.100746
4304935 3.585687
4304937 4.012305
4304938 4.666168
4304939 2.760168
4304940 3.347829
4304941 4.501923
4304942 8.223719

Total number of rows: 1201338

Table truncated, full table size 19840 Kbytes.




Supplementary file Size Download File type/resource
GSM400418.CEL.gz 37.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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