GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM36992
Query DataSets for GSM36992
Status
Public on Feb 23, 2005
Title
Wang4058_JA-86
Sample type
RNA
Source name
Breast
Organism
Homo sapiens
Characteristics
bone relapses (1=yes, 0=no): 0
Extracted molecule
total RNA
Description
RNA was extracted from a fresh-frozen primary breast tumor. Target cRNA was prepared and hybridized using standard Affymetrix procedures. Image was globally scaled to a target intensity of 600.
Submission date
Dec 03, 2004
Last update date
Apr 02, 2012
Contact name
Tim Jatkoe
E-mail(s)
tjatkoe@vrxus.jnj.com
Phone
(858) 320-3315
Organization name
Veridex
Street address
City
San Diego
State/province
CA
ZIP/Postal code
92121
Country
USA
Platform ID
GPL96
Series (1)
GSE2034
Breast cancer relapse free survival
Data table header descriptions
ID_REF
VALUE
'signal' a measure of the abundance of a transcript
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
474.9
P
0.000581
AFFX-BioB-M_at
914.0
P
0.000044
AFFX-BioB-3_at
457.9
P
0.000044
AFFX-BioC-5_at
1340.3
P
0.000070
AFFX-BioC-3_at
951.9
P
0.000044
AFFX-BioDn-5_at
1135.3
P
0.000044
AFFX-BioDn-3_at
5828.0
P
0.000060
AFFX-CreX-5_at
9717.6
P
0.000044
AFFX-CreX-3_at
13840.4
P
0.000044
AFFX-DapX-5_at
19.1
A
0.340661
AFFX-DapX-M_at
27.5
A
0.102165
AFFX-DapX-3_at
2.3
A
0.989683
AFFX-LysX-5_at
13.0
A
0.262827
AFFX-LysX-M_at
4.1
A
0.891021
AFFX-LysX-3_at
19.5
A
0.185131
AFFX-PheX-5_at
3.5
A
0.921998
AFFX-PheX-M_at
9.7
A
0.659339
AFFX-PheX-3_at
12.0
A
0.783476
AFFX-ThrX-5_at
3.8
A
0.883887
AFFX-ThrX-M_at
26.3
A
0.425962
Total number of rows:
22283
Table truncated, full table size
603 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM36992.CEL.gz
3.4 Mb
(ftp)
(http)
CEL
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
