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Sample GSM34282

Query DataSets for GSM34282

Status

Public on Nov 08, 2004

Title

OSJNGb

Sample type

SAGE

Anchor

NlaIII

Tag Count

282420

Tag Length

Source name

21 days leaf of Oryza sativa subsp. japonica cultivar Nipponbare

Organism

Oryza sativa Japonica Group

Extracted molecule

total RNA

Description

Library: OSJNGb,
Treatment: Che8061,
Reaction: Suceptible,
Time Point: 24 hrs after infection with fungus,
Tissue: 21 days leaf
Tag extraction: Ditags are rejected if they do not start and end with CATG and the length is not between 40-43 bases. Tags are only rejected if they contain one or more N's. View quality of tags at http://www.mgosdb.org/sage.
Keywords = Oryza Sativa
Keywords = LongSAGE
Keywords = Rice blast disease
Keywords = OSJNGb
Keywords = MGOS
Lot batch =

Submission date

Nov 01, 2004

Last update date

Nov 19, 2008

Contact name

Carol Soderlund

E-mail(s)

cari@agcol.arizona.edu

Phone

5206269600

URL

http://www.agcol.arizona.edu

Organization name

University of Arizona

Department

BIO5 Institute

Lab

Arizona Genome Computational Laboratory

Street address

303, Forbes Building

City

Tucson

State/province

ZIP/Postal code

85721

Country

USA

Platform ID

GPL775

Series (1)

GSE1924

Oryza Sativa and Magnaporthe Grisea LongSAGE

Data table header descriptions
TAG
COUNT	Count
TPM	tags per million

Data table
TAG	COUNT	TPM
CAGGATATCTATCTAAG	2400	8497.98
TATATAATCTTCACTAG	1857	6575.31
TAACAGCGAGCAGGGCC	1777	6292.05
TGTTTCCCTACTTTCAG	1584	5608.67
ACAAGCCAGCAGTTGCC	1239	4387.08
TAATGGTACATATCTCC	1004	3554.99
ACAAGTTTTTGTTAATA	967	3423.98
GTGTTTTTGAATAGCAG	903	3197.37
TTTTCCTTGTAGTAACA	822	2910.56
GAGAGAGGGAAGGAAGG	762	2698.11
AATTGAGTTCGCTTTGG	754	2669.78
TGGAGCTTATGTAATGA	674	2386.52
TTATACCAAAAGGATAA	661	2340.49
TATATGTACGTACTTAG	632	2237.80
CAGTTTGTTGAAACCTT	628	2223.64
TGTGCGTGTGAATTGTG	576	2039.52
GTACATACTATGAATGA	515	1823.53
TAGCATCATTGGAAAAA	478	1692.51
ACTTTGTATATTTCCAA	449	1589.83
TATCATAAGGATGAAGG	449	1589.83

Total number of rows: 31025

Table truncated, full table size 774 Kbytes.

Supplementary data files not provided