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Sample GSM321790 Query DataSets for GSM321790
Status Public on Sep 26, 2008
Title Roots of the variety ICC588 treated by dehydration for 6 hours
Sample type SAGE
Anchor NlaIII
Tag Count 53141
Tag Length 22
 
Source name chickpea roots of variety ICC588
Organism Cicer arietinum
Characteristics chickpea variety: ICC588 (salt tolerant)
treatment: dehydration
time: 6 hours
Extracted molecule polyA RNA
Extraction protocol CTAB with LiCl precipitation
 
Description Supersage libraries of chickpea roots were developed in control as well as 6h dehydration conditions
 
Submission date Sep 17, 2008
Last update date Sep 04, 2009
Contact name Carlos Mauricio Molina
E-mail(s) carmolin@gmail.com, carlos.molina@dijon.inra.fr
Organization name INRA
Department UMRLEG
Lab P. sativum
Street address 17 Rue Sully
City Dijon
State/province Bourgogne
ZIP/Postal code 21000
Country France
 
Platform ID GPL7318
Series (1)
GSE12812 SuperSAGE: The drought stress-responsive transcriptome of chickpea roots

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
CAAACGCTGATGATGTGTAGTT 520 9785.29
TGTAAGCAAATATAGCTAATAT 411 7734.14
GACTAGTAGTGATTGGAAGGGT 262 4930.28
AAATTGTAGATAACTGTTTGTG 254 4779.74
TGTGATGTATTGTTGTAATTGT 253 4760.92
GGCTTAAAGACGTATTTATGTA 213 4008.20
GGTGTTTGTGTATCGCACAATT 209 3932.93
GGCCTATGCCACCAACTTTGTT 208 3914.12
CATTGTCTATGTGGTTCGGTTC 204 3838.84
CATATTTGCTTATGTTGTTTCT 192 3613.03
TTATGGTTTTGTGTTACTGTGG 182 3424.85
CGTCAAACTGTTGCTGTCGGTG 166 3123.77
AATGGATTAACGAGATTCCCAC 154 2897.95
TGTTAACGTTGCCTAAAGATAT 134 2521.59
CAACTTTAATATTAAACCTATG 126 2371.05
TTGGTGCAATGAAAGTTTTTTT 126 2371.05
AATTAGAATATCATAAGTGTAA 125 2352.23
GTGTGTTACTGTGTTTCTCTAG 124 2333.41
TAACATAGAGACATAATAAACT 122 2295.78
ATAAAGTTTGTTTCTTATATCT 120 2258.14

Total number of rows: 13899

Table truncated, full table size 423 Kbytes.




Supplementary data files not provided

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