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| Status |
Public on Jul 30, 2009 |
| Title |
Rice mutant dst, biological rep3 |
| Sample type |
RNA |
| |
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| Source name |
mutant plant dst,replicate3
|
| Organism |
Oryza sativa |
| Characteristics |
Strain: Oryza sativa L.dst mutant,Tissue: shoots
Age: 25 days
|
| Growth protocol |
Seedlings were grown in a growth chamber with an 11h light (26°C)/13h dark(22°C) photoperiod for 25 days.
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| Extracted molecule |
total RNA |
| Extraction protocol |
Trizol extraction of total RNA was performed according to the manufacturer's instructions.
|
| Label |
biotin
|
| Label protocol |
standard Affymetrix procedures
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| |
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| Hybridization protocol |
standard Affymetrix procedures
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| Scan protocol |
GeneChips were scanned using the Gene array Scanner3000.
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| Description |
mutant plant dst,replicate3
|
| Data processing |
GCOS1.2
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| |
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| Submission date |
Apr 14, 2008 |
| Last update date |
Jun 21, 2009 |
| Contact name |
Hong-Xuan Lin |
| Organization name |
Shanghai Institute of Plant Physiology and Ecology
|
| Street address |
300 Fenglin Road
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| City |
Shanghai |
| ZIP/Postal code |
200032 |
| Country |
China |
| |
|
| Platform ID |
GPL2025 |
| Series (1) |
| GSE11175 |
Comparison of transcriptome profile between wild-type and dst mutant plants |
|
| Data table header descriptions |
| ID_REF |
Probe Set ID |
| VALUE |
MAS5-calculated Signal intensity |
| ABS_CALL |
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC) |
| DETECTION P-VALUE |
'detection p-value', p-value that indicates the significance level of the detection call |
| Data table |
| ID_REF |
VALUE |
ABS_CALL |
DETECTION P-VALUE |
| AFFX-BioB-3_at |
242.5 |
P |
0.003595 |
| AFFX-BioB-5_at |
398.8 |
P |
0.005565 |
| AFFX-BioB-M_at |
242.4 |
P |
0.002867 |
| AFFX-BioC-3_at |
819.8 |
P |
0.000044 |
| AFFX-BioC-5_at |
847.3 |
P |
0.000095 |
| AFFX-BioDn-3_at |
4479.2 |
P |
0.000081 |
| AFFX-BioDn-5_at |
1808.9 |
P |
0.000052 |
| AFFX-CreX-3_at |
14169.8 |
P |
0.000044 |
| AFFX-CreX-5_at |
11694.4 |
P |
0.000052 |
| AFFX-DapX-3_at |
1253 |
P |
0.00007 |
| AFFX-DapX-5_at |
389.4 |
P |
0.000147 |
| AFFX-DapX-M_at |
980 |
P |
0.004484 |
| AFFX-LysX-3_at |
344.5 |
P |
0.000127 |
| AFFX-LysX-5_at |
81.8 |
A |
0.131361 |
| AFFX-LysX-M_at |
164.8 |
A |
0.455413 |
| AFFX-Mgr-actin-3_at |
52.3 |
A |
0.72583 |
| AFFX-Mgr-actin-5_at |
46.7 |
A |
0.432373 |
| AFFX-Mgr-actin-M_at |
11.8 |
A |
0.962402 |
| AFFX-Mgr-ef1a-3_at |
18 |
A |
0.919434 |
| AFFX-Mgr-ef1a-3_x_at |
30.7 |
A |
0.888428 |
Total number of rows: 57381
Table truncated, full table size 1972 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM281588.CEL.gz |
4.8 Mb |
(ftp)(http) |
CEL |
| Processed data included within Sample table |
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