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GEO accession:
Sample GSM272110
Query DataSets for GSM272110
Status
Public on Oct 02, 2008
Title
Ecotype At_35SAvr2 RNA sample2
Sample type
RNA
Source name
Foliar tissue from expression of C. fulvum avirulence gene (Avr2)
Organism
Arabidopsis thaliana
Characteristics
Green plant
Extracted molecule
total RNA
Extraction protocol
Trizol+Machery nagel Kit
Label
biotin
Label protocol
Affymetrix 1 cycle target
Hybridization protocol
Standard affymetrix
Scan protocol
Standard affymetrix
Description
Each replicate consists of either 10 Avr2-expressing or 10 Col-0 Arabidopsis plants.
Data processing
MAS5.0 algorithm
Submission date
Mar 11, 2008
Last update date
Aug 28, 2018
Contact name
Bart Thomma
E-mail(s)
Bart.thomma@wur.nl
Phone
+31-317-484536
Fax
+31-317 483412
URL
http://www.php.wur.nl/UK/Research/ArabidopsisMolecularPhytopathology/
Organization name
Wageningen University
Department
Plant Sciences
Lab
Phytopathology
Street address
Binnenhaven 5
City
Wageningen
State/province
Gelderland
ZIP/Postal code
6709 PD
Country
Netherlands
Platform ID
GPL198
Series (1)
GSE10801
C. fulvum Avr2
Relations
Reanalyzed by
GSE119083
Data table header descriptions
ID_REF
VALUE
normalized signal intensity
ABS_CALL
Absent or Present Call
DETECTION P-VALUE
detection p-value
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
87.6826
P
0.000146581
AFFX-BioB-M_at
87.9623
P
5.16732e-05
AFFX-BioB-3_at
71.7531
P
4.42873e-05
AFFX-BioC-5_at
328.716
P
5.16732e-05
AFFX-BioC-3_at
253.548
P
4.42873e-05
AFFX-BioDn-5_at
601.76
P
4.42873e-05
AFFX-BioDn-3_at
1014.26
P
4.42873e-05
AFFX-CreX-5_at
2944.99
P
4.42873e-05
AFFX-CreX-3_at
3670.64
P
4.42873e-05
AFFX-DapX-5_at
465.348
P
4.42873e-05
AFFX-DapX-M_at
968.261
P
4.42873e-05
AFFX-DapX-3_at
1654.01
P
4.42873e-05
AFFX-LysX-5_at
77.8046
P
6.02111e-05
AFFX-LysX-M_at
99.582
P
4.42873e-05
AFFX-LysX-3_at
283.22
P
4.42873e-05
AFFX-PheX-5_at
101.13
P
4.42873e-05
AFFX-PheX-M_at
110.851
P
5.16732e-05
AFFX-PheX-3_at
218.349
P
4.42873e-05
AFFX-ThrX-5_at
118.433
P
5.16732e-05
AFFX-ThrX-M_at
177.67
P
5.16732e-05
Total number of rows:
22810
Table truncated, full table size
679 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM272110.CEL.gz
2.0 Mb
(ftp)
(http)
CEL
GSM272110.CHP.gz
124.5 Kb
(ftp)
(http)
CHP
Processed data included within Sample table
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