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Sample GSM25517 Query DataSets for GSM25517
Status Public on Aug 12, 2004
Title GM11983_rep1
Sample type RNA
 
Source name Lymphoblastoid cell line
Organism Homo sapiens
Characteristics Coriell cell line repository identifier: GM11983
http://locus.umdnj.edu/nigms/nigms_cgi/display.cgi?GM11983


Biomaterial provider Coriell Cell Repositories

Coriell
Extracted molecule total RNA
 
Description Sample description = RNA was extracted from lymphoblastoid cells of members of the CEPH Utah pedigrees. The cells were grown at a density of 5 x 105 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber. RNA samples were processed and hybridized onto the Affymetrix Human Focus Arrays according to the manufacturer’s suggestion. Arrays were scanned and analyzed using MAS 5.0 software (Affymetrix).
 
Submission date Jun 17, 2004
Last update date Nov 30, 2005
Contact name Michael Patrick Morley
E-mail(s) mmorley@pennmedicine.upenn.edu
Phone 215-898-2026
Organization name Perelman School of Medicine at the University of Pennsylvania
Department Penn Cardiovascular Institute
Street address 3400 Civic Center Blvd, Bldg 421
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL201
Series (1)
GSE1485 Natural variation in human gene expression

Data table header descriptions
ID_REF
VALUE 'signal' a measure of the abundance of a transcript
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
1007_s_at 330.9 P
1053_at 480.4 P
117_at 250.5 P
121_at 1168.4 P
1255_g_at 50.3 A
1294_at 628.9 P
1316_at 125 P
1320_at 15.8 A
1431_at 68.3 P
1438_at 19.6 A
1487_at 423.1 P
1494_f_at 289.8 P
1598_g_at 296.8 A
160020_at 412.1 P
1729_at 516.4 P
1773_at 99.9 A
177_at 118.2 A
1861_at 164 A
200000_s_at 2741.7 P
200001_at 2438.7 P

Total number of rows: 8793

Table truncated, full table size 157 Kbytes.




Supplementary file Size Download File type/resource
GSM25517.CEL.gz 1.3 Mb (ftp)(http) CEL

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