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Sample GSM252778 Query DataSets for GSM252778
Status Public on May 01, 2008
Title NA15510/ABC10_GPL6292
Sample type genomic
 
Channel 1
Source name NA15510
Organism Homo sapiens
Characteristics Coriell Reference sample: NA15510
Biomaterial provider Coriell: NA15510 http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA15510
Extracted molecule genomic DNA
Extraction protocol Performed by the Coriell Cell Repository
Label Cy5
Label protocol Agilent DNA labeling kit
 
Channel 2
Source name ABC10
Organism Homo sapiens
Characteristics Coriell sample: NA19240
Biomaterial provider Coriell: NA19240 http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA19240
Extracted molecule genomic DNA
Extraction protocol Performed by the Coriell Cell Repository
Label Cy3
Label protocol Agilent DNA labeling kit
 
 
Hybridization protocol See manufacturer website: <http://www.chem.agilent.com/scripts/LiteraturePDF.asp?iWHID=52010>
Scan protocol Scanned on an Agilent G2505A Scanner
Description Female, Yoruba
Data processing Agilent Feature Extraction v9.1, default CGH parameters
 
Submission date Dec 21, 2007
Last update date Apr 23, 2008
Contact name Nick Sampas
E-mail(s) nick_sampas@agilent.com
Organization name Agilent Technologies
Department Life Science and Nanotechnology Department
Lab Molecular Technology Laboratory
Street address 5301 Stevens Creek Blvd
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Platform ID GPL6292
Series (1)
GSE10008 Fine-Scale Mapping and Sequencing of Structural Variation from Eight Human Genomes

Data table header descriptions
ID_REF
VALUE log(REDsignal/GREENsignal) per feature (processed signals used)
LogRatioError error of the log ratio calculated according to the error model chosen

Data table
ID_REF VALUE LogRatioError
1 -0.13127 0.062649
2 -0.12683 0.3832
3 0 0.59188
4 0.064963 0.067025
5 -0.017183 0.063664
6 -0.085412 0.061949
7 -0.092531 0.063179
8 0.012419 0.061897
9 -0.11011 0.06229
10 0.027906 0.061475
11 -0.096249 0.064631
12 -0.002457 0.071384
13 0.009251 0.061645
14 0.012007 0.063953
15 0.024378 0.062327
16 0.014558 0.062029
17 0.026501 0.071777
18 0.12622 0.079713
19 0.062804 0.06181
20 -0.017748 0.061532

Total number of rows: 243504

Table truncated, full table size 5891 Kbytes.




Supplementary file Size Download File type/resource
GSM252778.txt.gz 23.4 Mb (ftp)(http) TXT
Processed data included within Sample table

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