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GEO accession:
Sample GSM2527428
Query DataSets for GSM2527428
Status
Public on Mar 09, 2017
Title
ChIP-seq from ACC112 (ENCLB459BIM)
Sample type
SRA
Source name
Homo sapiens ACC112 immortalized cell line
Organism
Homo sapiens
Characteristics
antibody: H3K27ac
line: ACC112
biomaterial_type: immortalized cell line
description: adenoid cystic carcinoma cell line supplied by Lurdes Queimado, M.D., Ph.D.Phone: 405-271-4232 (office); 405-271-4279 (lab); cells immortalized by infection with a retrovirus expressing HPV16 E6 and E7
biosample encode accession: ENCBS827JIC (SAMN06464525)
dev stage: adult
Sex: male
age: 70 year
health state: submaxillar tumor
lab: Bradley Bernstein, Broad
link: ENCBS827JIC at ENCODE;
https://www.encodeproject.org/ENCBS827JIC/
link: Derived from ENCODE donor ENCDO085ZKK;
https://www.encodeproject.org/ENCDO085ZKK/
link: ENCODE dbxrefs Cellosaurus CVCL_Y492;
http://web.expasy.org/cellosaurus/CVCL_Y492
Extracted molecule
genomic DNA
Extraction protocol
extraction method: see document
general protocol:
https://www.encodeproject.org/documents/18f0d330-5799-45f7-babe-7728dfbd1103/@@download/attachment/Epigenomics_Mag%20Bead_ChIP_Protocol_v01.4_exp.pdf
Library strategy
ChIP-Seq
Library source
genomic
Library selection
ChIP
Instrument model
Illumina HiSeq 2500
Description
https://www.encodeproject.org/experiments/ENCSR059MVB/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR059MVB
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR836XKP
encode release date: 2014-09-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB459BIM
size range: 200-600
Data processing
See GSM*_README.txt supplementary file linked below
Submission date
Mar 09, 2017
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL16791
Series (1)
GSE95903
ChIP-seq from ACC112 (ENCSR059MVB)
Relations
BioSample
SAMN06464525
SRA
SRX2630159
Supplementary file
Size
Download
File type/resource
GSM2527428_ENCLB459BIM_README.txt.gz
1.7 Kb
(ftp)
(http)
TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record
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