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Sample GSM230072 Query DataSets for GSM230072
Status Public on Dec 23, 2007
Title NA15510/ABC12
Sample type genomic
 
Channel 1
Source name NA15510
Organism Homo sapiens
Characteristics Coriell Reference sample: NA15510
Biomaterial provider Coriell: NA15510 http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA15510
Extracted molecule genomic DNA
Extraction protocol Performed by the Coriell Cell Repository
Label Cy5
Label protocol Agilent DNA labeling kit
 
Channel 2
Source name ABC12
Organism Homo sapiens
Characteristics Coriell sample: NA12878
Biomaterial provider Coriell: NA12878 http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA12878
Extracted molecule genomic DNA
Extraction protocol Performed by the Coriell Cell Repository
Label Cy3
Label protocol Agilent DNA labeling kit
 
 
Hybridization protocol See manufacturer website: <http://www.chem.agilent.com/scripts/LiteraturePDF.asp?iWHID=52010>
Scan protocol Scanned on an Agilent G2505A Scanner
Description CEPH female
Data processing Agilent Feature Extraction v9.1, default CGH parameters
 
Submission date Sep 18, 2007
Last update date Aug 14, 2011
Contact name Nick Sampas
E-mail(s) nick_sampas@agilent.com
Organization name Agilent Technologies
Department Life Science and Nanotechnology Department
Lab Molecular Technology Laboratory
Street address 5301 Stevens Creek Blvd
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Platform ID GPL5884
Series (1)
GSE9075 Closing Gaps in the Human Genome with Fosmid Resources Generated from Multiple Individuals

Data table header descriptions
ID_REF
VALUE log(REDsignal/GREENsignal) per feature (processed signals used)
LogRatioError error of the log ratio calculated according to the error model chosen

Data table
ID_REF VALUE LogRatioError
1 -0.13312 0.062636
2 -0.10395 0.39127
3 0 0.56177
4 0.1913 0.063864
5 -0.098193 0.063655
6 -0.085538 0.063503
7 0.35839 0.54743
8 -0.26107 0.06723
9 0.29795 0.067197
10 0.13191 0.062609
11 0.11008 0.063809
12 0.25396 0.065686
13 0.028175 0.061887
14 -0.038767 0.061812
15 -0.050341 0.06172
16 -0.10062 0.062674
17 0.10582 0.062233
18 -0.10105 0.086232
19 -0.041835 0.061728
20 -0.013502 0.061785

Total number of rows: 243504

Table truncated, full table size 5772 Kbytes.




Supplementary file Size Download File type/resource
GSM230072.txt.gz 23.7 Mb (ftp)(http) TXT
Processed data included within Sample table

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