NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM215033 Query DataSets for GSM215033
Status Public on Aug 14, 2007
Title sample 40 positive polarity
Sample type genomic
 
Channel 1
Source name sample 40
Organism Homo sapiens
Characteristics Normal white male from Northern France
Total genomic DNA from blood
Extracted molecule genomic DNA
Extraction protocol Gentra Puregene
Label Cy5
Label protocol Agilent DNA labeling kit
 
Channel 2
Source name reference DNA 15510
Organism Homo sapiens
Characteristics Reference DNA
NA015510
Biomaterial provider Coriell Cell Repositories http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA015510
Extracted molecule genomic DNA
Extraction protocol Unknown
Label Cy3
Label protocol Agilent DNA labeling kit
 
 
Hybridization protocol See manufacturer website: <http://www.chem.agilent.com/scripts/LiteraturePDF.asp?iWHID=52010>
Scan protocol Scanned on an Agilent G2505A Scanner
Description sample 40 hybridization
Data processing Agilent Feature Extraction v9.1, default CGH parameters
 
Submission date Aug 02, 2007
Last update date Aug 14, 2011
Contact name Alicia Scheffer
Organization name Agilent Technologies
Street address 5301 Stevens Creek Blvd.
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Platform ID GPL5693
Series (1)
GSE8691 Array CGH analysis of copy number variation identifies 1284 new genes variant in healthy white males

Data table header descriptions
ID_REF
VALUE log(REDsignal/GREENsignal) per feature (processed signals used)
LogRatioError error of the log ratio calculated according to the error model chosen

Data table
ID_REF VALUE LogRatioError
1 0.0030042 0.047394
2 0.23848 0.38455
3 0 0.48891
4 0.0014262 0.048588
5 -0.0076518 0.048571
6 0.051065 0.053919
7 -0.09781 0.049487
8 0.03053 0.049304
9 -0.011868 0.04959
10 0.019401 0.049695
11 -0.074467 0.051816
12 -0.012673 0.05011
13 -0.0024237 0.05029
14 -0.012039 0.051379
15 -0.026774 0.054206
16 0.043194 0.05318
17 0.077699 0.052703
18 -0.011909 0.052489
19 0.11193 0.055332
20 0.091302 0.053925

Total number of rows: 243504

Table truncated, full table size 5890 Kbytes.




Supplementary file Size Download File type/resource
GSM215033.txt.gz 23.7 Mb (ftp)(http) TXT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap