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GEO accession:
Sample GSM203754
Query DataSets for GSM203754
Status
Public on Jun 25, 2007
Title
Kidney - 345997
Sample type
RNA
Source name
Kidney
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Quality metric = 28S to 18S: 1.4
Patient Age: 60-70
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 51-55
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 87
Clinical T: 1b
Clinical N: 0
Clinical M: 0
Clinical Stage: 1
Clinical Grade: 2
Clinical Multiple Tumors: Yes
Primary Site: Kidney
Histology: Papillary renal cell carcinoma
Submission date
Jun 22, 2007
Last update date
Aug 28, 2018
Contact name
Erin Curley
E-mail(s)
ecurley@intgen.org
Phone
602-343-8808
Fax
602-343-8440
URL
http://www.intgen.org
Organization name
IGC
Department
Lab
expO
Street address
445 N. 5th Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85004
Country
USA
Platform ID
GPL570
Series (1)
GSE2109
Expression Project for Oncology (expO)
Relations
Reanalyzed by
GSE64985
Reanalyzed by
GSE119087
Data table header descriptions
ID_REF
The name of the probe set, blank for control probes
VALUE
The signal value calculated by MAS5, normalized
ABS_CALL
The detection value calculated by the MAS5
DETECTION P-VALUE
The detection p-value calculated by the MAS5
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
1039.8
P
0.000446
AFFX-BioB-M_at
1624.9
P
0.000044
AFFX-BioB-3_at
980.3
P
0.000052
AFFX-BioC-5_at
1225.5
P
0.000081
AFFX-BioC-3_at
1328.2
P
0.000070
AFFX-BioDn-5_at
9174.8
P
0.000044
AFFX-BioDn-3_at
14242.6
P
0.000060
AFFX-CreX-5_at
40155.9
P
0.000052
AFFX-CreX-3_at
44561.9
P
0.000044
AFFX-DapX-5_at
3327.3
P
0.000044
AFFX-DapX-M_at
5765.6
P
0.000127
AFFX-DapX-3_at
7648.6
P
0.000044
AFFX-LysX-5_at
305.7
P
0.000044
AFFX-LysX-M_at
500.4
P
0.000390
AFFX-LysX-3_at
1151.5
P
0.000052
AFFX-PheX-5_at
377.2
P
0.000127
AFFX-PheX-M_at
758.5
P
0.000169
AFFX-PheX-3_at
559.9
P
0.000060
AFFX-ThrX-5_at
733.6
P
0.000060
AFFX-ThrX-M_at
1068.6
P
0.000044
Total number of rows:
54675
Table truncated, full table size
1472 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM203754.CEL.gz
4.9 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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