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| Status |
Public on Feb 15, 2008 |
| Title |
O#89 |
| Sample type |
RNA |
| |
|
| Source name |
bone marrow
|
| Organism |
Homo sapiens |
| Characteristics |
Male, 146 months of age
|
| Biomaterial provider |
COG cell bank
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Qiagen Rneasy
|
| Label |
biotin
|
| Label protocol |
Enzo BioArray HighYield RNA transcript labeling kit
|
| |
|
| Hybridization protocol |
Affymetrix:Protocol:Hybridization-EukGE-WS2v4_450
|
| Scan protocol |
M10 scanner, Pixel size 1.56, Filter 570
|
| Description |
Relapse: patients that relapsed within 3 years of initial diagnosis
|
| Data processing |
MAS 5.0
|
| |
|
| Submission date |
Apr 03, 2007 |
| Last update date |
Nov 14, 2018 |
| Contact name |
Deepa Bhojwani |
| E-mail(s) |
deepa.bhojwani@med.nyu.edu
|
| Organization name |
New York University School of Medicine
|
| Department |
Pediatric Hematology Oncology
|
| Street address |
Smilow Research Building 1206-B, 522 First Avenue
|
| City |
New York |
| State/province |
NY |
| ZIP/Postal code |
10016 |
| Country |
USA |
| |
|
| Platform ID |
GPL570 |
| Series (1) |
| GSE7440 |
Early Response and Outcome in High-Risk Childhood Acute Lymphoblastic Leukemia: A Children’s Oncology Group Study |
|
| Relations |
| Reanalyzed by |
GSE64985 |
| Reanalyzed by |
GSE119087 |
| Reanalyzed by |
GSE122511 |
| Data table header descriptions |
| ID_REF |
|
| VALUE |
Signal |
| ABS_CALL |
indicating whether the transcript was present (P), absent (A), or marginal (M) |
| DETECTION P-VALUE |
|
| Data table |
| ID_REF |
VALUE |
ABS_CALL |
DETECTION P-VALUE |
| AFFX-BioB-5_at |
165.592 |
P |
0.000296708 |
| AFFX-BioB-M_at |
181.11 |
P |
8.14279e-05 |
| AFFX-BioB-3_at |
101.802 |
P |
0.00010954 |
| AFFX-BioC-5_at |
719.129 |
P |
4.42873e-05 |
| AFFX-BioC-3_at |
660.103 |
P |
4.42873e-05 |
| AFFX-BioDn-5_at |
1145.07 |
P |
4.42873e-05 |
| AFFX-BioDn-3_at |
2599.85 |
P |
4.42873e-05 |
| AFFX-CreX-5_at |
5793.78 |
P |
5.16732e-05 |
| AFFX-CreX-3_at |
5976.28 |
P |
4.42873e-05 |
| AFFX-DapX-5_at |
13.7568 |
P |
0.0284573 |
| AFFX-DapX-M_at |
7.14085 |
A |
0.659339 |
| AFFX-DapX-3_at |
0.462186 |
A |
0.995002 |
| AFFX-LysX-5_at |
3.99671 |
A |
0.514891 |
| AFFX-LysX-M_at |
9.02366 |
A |
0.659339 |
| AFFX-LysX-3_at |
6.74102 |
A |
0.60308 |
| AFFX-PheX-5_at |
0.983943 |
A |
0.978098 |
| AFFX-PheX-M_at |
0.945541 |
A |
0.981719 |
| AFFX-PheX-3_at |
4.03051 |
A |
0.760937 |
| AFFX-ThrX-5_at |
1.39799 |
A |
0.963431 |
| AFFX-ThrX-M_at |
2.28636 |
A |
0.760937 |
Total number of rows: 54675
Table truncated, full table size 1602 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM180222.CEL.gz |
8.0 Mb |
(ftp)(http) |
CEL |
| GSM180222.CHP.gz |
12.8 Mb |
(ftp)(http) |
CHP |
| GSM180222.EXP.gz |
526 b |
(ftp)(http) |
EXP |
| Processed data provided as supplementary file |
| Processed data included within Sample table |
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